© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3938.t1 |
| Gene name | |
| Location | scaffold_07:329440..330131 |
| Strand | - |
| Gene length (bp) | 691 |
| Transcript length (bp) | 426 |
| Coding sequence length (bp) | 426 |
| Protein length (aa) | 142 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 5.5E-23 | 4 | 74 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 20 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 197.95 | 111.53 | 284.38 |
| 5d_25C | Five days - 25 degrees Celsius | 216.21 | 123.85 | 308.57 |
| 7d_25C | Seven days - 25 degrees Celsius | 292.16 | 168.22 | 416.11 |
| 10d_25C | Ten days - 25 degrees Celsius | 259.30 | 152.44 | 366.16 |
| 7d_15C | Seven days - 15 degrees Celsius | 602.53 | 348.82 | 856.25 |
| 7d_30C | Seven days - 30 degrees Celsius | 230.38 | 133.04 | 327.73 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.792824 | no |
| 3d_25C | 7d_25C | 0.103445 | no |
| 3d_25C | 7d_15C | 0.000700 | yes |
| 3d_25C | 7d_30C | 0.623762 | no |
| 3d_25C | 10d_25C | 0.300326 | no |
| 5d_25C | 7d_25C | 0.225973 | no |
| 5d_25C | 7d_15C | 0.000700 | yes |
| 5d_25C | 7d_30C | 0.855562 | no |
| 5d_25C | 10d_25C | 0.509162 | no |
| 7d_25C | 7d_15C | 0.000700 | yes |
| 7d_25C | 7d_30C | 0.378317 | no |
| 7d_25C | 10d_25C | 0.694877 | no |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.697896 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3938.t1 MSKLFIGGLSWNTDDNSLRQRFEEFGVVEDATVVKDRDTGRSRGFGFVRYSTDDEATAAMNAMNNQEFDGRQIRV DKATERAAGGGGGRGGGFGGGGYRGGGNGGYGGGQGGYGGGQGGYGGGQGGYGGQQGGQGGYGGGY* |
| Coding | >Pro_DTO377G3_2|g3938.t1 ATGTCGAAGCTTTTCATTGGCGGTCTTTCCTGGAACACAGACGACAACAGTCTGCGCCAGCGCTTCGAGGAATTC GGCGTTGTTGAGGATGCTACCGTCGTCAAGGACCGTGATACTGGTCGCAGCCGTGGTTTCGGTTTCGTTCGTTAC TCCACCGACGATGAGGCTACTGCCGCTATGAACGCCATGAACAACCAGGAGTTCGACGGTCGCCAGATCCGTGTT GACAAGGCTACTGAGCGCGCTGCCGGTGGCGGTGGTGGTCGCGGCGGCGGCTTCGGCGGCGGCGGTTACCGTGGT GGCGGCAACGGAGGCTACGGTGGTGGCCAGGGTGGCTACGGCGGTGGTCAGGGCGGTTACGGTGGTGGTCAGGGC GGCTACGGTGGCCAGCAAGGCGGCCAAGGTGGTTACGGCGGCGGCTACTAG |
| Transcript | >Pro_DTO377G3_2|g3938.t1 ATGTCGAAGCTTTTCATTGGCGGTCTTTCCTGGAACACAGACGACAACAGTCTGCGCCAGCGCTTCGAGGAATTC GGCGTTGTTGAGGATGCTACCGTCGTCAAGGACCGTGATACTGGTCGCAGCCGTGGTTTCGGTTTCGTTCGTTAC TCCACCGACGATGAGGCTACTGCCGCTATGAACGCCATGAACAACCAGGAGTTCGACGGTCGCCAGATCCGTGTT GACAAGGCTACTGAGCGCGCTGCCGGTGGCGGTGGTGGTCGCGGCGGCGGCTTCGGCGGCGGCGGTTACCGTGGT GGCGGCAACGGAGGCTACGGTGGTGGCCAGGGTGGCTACGGCGGTGGTCAGGGCGGTTACGGTGGTGGTCAGGGC GGCTACGGTGGCCAGCAAGGCGGCCAAGGTGGTTACGGCGGCGGCTACTAG |
| Gene | >Pro_DTO377G3_2|g3938.t1 ATGTCGAAGCTTTTCATTGGGTAAGACTGACCCTAGTGAAGATATAACATGCGCCTGCTGACCCTCATTTTCTAG CGGTCTTTCCTGGAACACAGACGACAACAGTCTGCGCCAGCGCTTCGAGGAATTCGGCGTTGTTGAGGATGCTGT GAGTCGCTCTGACTTCCATCACTGATTGCCCAACTCTAATGTCCATTTTCTTTCTAGACCGTCGTCAAGGACCGT GATACTGGTCGCAGCCGTGGTTTCGGTTTCGTTCGTTACTCCACCGACGATGAGGCTACTGCCGCTATGAACGCC ATGAACAACCAGGAGTAAGCAAGCTAATCCCATATCTCCTCTCCTCCGCTTTAAGCGACTGGTCAAGTCAAGTCG TCCTGGGACAGTCGCGCATCATGGGCGTCGCCTGTTCCAGCGCGACATCTACTTCCCGTCAGAACATCTACTAAC AACCACTTCTTTCAGGTTCGACGGTCGCCAGATCCGTGTTGACAAGGCTACTGAGCGCGCTGCCGGTGGCGGTGG TGGTCGCGGCGGCGGCTTCGGCGGCGGCGGTTACCGTGGTGGCGGCAACGGAGGCTACGGTGGTGGCCAGGGTGG CTACGGCGGTGGTCAGGGCGGTTACGGTGGTGGTCAGGGCGGCTACGGTGGCCAGCAAGGCGGCCAAGGTGGTTA CGGCGGCGGCTACTAG |