Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g3938.t1
Gene name
Locationscaffold_07:329440..330131
Strand-
Gene length (bp)691
Transcript length (bp)426
Coding sequence length (bp)426
Protein length (aa) 142

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.5E-23 4 74

GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0097159 organic cyclic compound binding No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0003676 nucleic acid binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 20 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 197.95 111.53 284.38
5d_25C Five days - 25 degrees Celsius 216.21 123.85 308.57
7d_25C Seven days - 25 degrees Celsius 292.16 168.22 416.11
10d_25C Ten days - 25 degrees Celsius 259.30 152.44 366.16
7d_15C Seven days - 15 degrees Celsius 602.53 348.82 856.25
7d_30C Seven days - 30 degrees Celsius 230.38 133.04 327.73

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.792824 no
3d_25C 7d_25C 0.103445 no
3d_25C 7d_15C 0.000700 yes
3d_25C 7d_30C 0.623762 no
3d_25C 10d_25C 0.300326 no
5d_25C 7d_25C 0.225973 no
5d_25C 7d_15C 0.000700 yes
5d_25C 7d_30C 0.855562 no
5d_25C 10d_25C 0.509162 no
7d_25C 7d_15C 0.000700 yes
7d_25C 7d_30C 0.378317 no
7d_25C 10d_25C 0.694877 no
7d_15C 7d_30C 0.000700 yes
7d_15C 10d_25C 0.000700 yes
7d_30C 10d_25C 0.697896 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g3938.t1
MSKLFIGGLSWNTDDNSLRQRFEEFGVVEDATVVKDRDTGRSRGFGFVRYSTDDEATAAMNAMNNQEFDGRQIRV
DKATERAAGGGGGRGGGFGGGGYRGGGNGGYGGGQGGYGGGQGGYGGGQGGYGGQQGGQGGYGGGY*
Coding >Pro_DTO377G3_2|g3938.t1
ATGTCGAAGCTTTTCATTGGCGGTCTTTCCTGGAACACAGACGACAACAGTCTGCGCCAGCGCTTCGAGGAATTC
GGCGTTGTTGAGGATGCTACCGTCGTCAAGGACCGTGATACTGGTCGCAGCCGTGGTTTCGGTTTCGTTCGTTAC
TCCACCGACGATGAGGCTACTGCCGCTATGAACGCCATGAACAACCAGGAGTTCGACGGTCGCCAGATCCGTGTT
GACAAGGCTACTGAGCGCGCTGCCGGTGGCGGTGGTGGTCGCGGCGGCGGCTTCGGCGGCGGCGGTTACCGTGGT
GGCGGCAACGGAGGCTACGGTGGTGGCCAGGGTGGCTACGGCGGTGGTCAGGGCGGTTACGGTGGTGGTCAGGGC
GGCTACGGTGGCCAGCAAGGCGGCCAAGGTGGTTACGGCGGCGGCTACTAG
Transcript >Pro_DTO377G3_2|g3938.t1
ATGTCGAAGCTTTTCATTGGCGGTCTTTCCTGGAACACAGACGACAACAGTCTGCGCCAGCGCTTCGAGGAATTC
GGCGTTGTTGAGGATGCTACCGTCGTCAAGGACCGTGATACTGGTCGCAGCCGTGGTTTCGGTTTCGTTCGTTAC
TCCACCGACGATGAGGCTACTGCCGCTATGAACGCCATGAACAACCAGGAGTTCGACGGTCGCCAGATCCGTGTT
GACAAGGCTACTGAGCGCGCTGCCGGTGGCGGTGGTGGTCGCGGCGGCGGCTTCGGCGGCGGCGGTTACCGTGGT
GGCGGCAACGGAGGCTACGGTGGTGGCCAGGGTGGCTACGGCGGTGGTCAGGGCGGTTACGGTGGTGGTCAGGGC
GGCTACGGTGGCCAGCAAGGCGGCCAAGGTGGTTACGGCGGCGGCTACTAG
Gene >Pro_DTO377G3_2|g3938.t1
ATGTCGAAGCTTTTCATTGGGTAAGACTGACCCTAGTGAAGATATAACATGCGCCTGCTGACCCTCATTTTCTAG
CGGTCTTTCCTGGAACACAGACGACAACAGTCTGCGCCAGCGCTTCGAGGAATTCGGCGTTGTTGAGGATGCTGT
GAGTCGCTCTGACTTCCATCACTGATTGCCCAACTCTAATGTCCATTTTCTTTCTAGACCGTCGTCAAGGACCGT
GATACTGGTCGCAGCCGTGGTTTCGGTTTCGTTCGTTACTCCACCGACGATGAGGCTACTGCCGCTATGAACGCC
ATGAACAACCAGGAGTAAGCAAGCTAATCCCATATCTCCTCTCCTCCGCTTTAAGCGACTGGTCAAGTCAAGTCG
TCCTGGGACAGTCGCGCATCATGGGCGTCGCCTGTTCCAGCGCGACATCTACTTCCCGTCAGAACATCTACTAAC
AACCACTTCTTTCAGGTTCGACGGTCGCCAGATCCGTGTTGACAAGGCTACTGAGCGCGCTGCCGGTGGCGGTGG
TGGTCGCGGCGGCGGCTTCGGCGGCGGCGGTTACCGTGGTGGCGGCAACGGAGGCTACGGTGGTGGCCAGGGTGG
CTACGGCGGTGGTCAGGGCGGTTACGGTGGTGGTCAGGGCGGCTACGGTGGCCAGCAAGGCGGCCAAGGTGGTTA
CGGCGGCGGCTACTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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