© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g393.t1 |
| Gene name | |
| Location | scaffold_01:998834..1000740 |
| Strand | - |
| Gene length (bp) | 1906 |
| Transcript length (bp) | 1722 |
| Coding sequence length (bp) | 1722 |
| Protein length (aa) | 574 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00160 | Pro_isomerase | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 4.5E-41 | 307 | 461 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0000413 | protein peptidyl-prolyl isomerization | Yes |
| GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | Yes |
| GO:0003674 | molecular_function | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0140096 | catalytic activity, acting on a protein | No |
| GO:0019538 | protein metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0036211 | protein modification process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0018208 | peptidyl-proline modification | No |
| GO:0003824 | catalytic activity | No |
| GO:0043412 | macromolecule modification | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0016853 | isomerase activity | No |
| GO:0018193 | peptidyl-amino acid modification | No |
| GO:0016859 | cis-trans isomerase activity | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 21 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 45.18 | 27.14 | 63.21 |
| 5d_25C | Five days - 25 degrees Celsius | 49.93 | 30.20 | 69.67 |
| 7d_25C | Seven days - 25 degrees Celsius | 56.95 | 34.54 | 79.36 |
| 10d_25C | Ten days - 25 degrees Celsius | 75.88 | 46.22 | 105.55 |
| 7d_15C | Seven days - 15 degrees Celsius | 48.08 | 28.75 | 67.41 |
| 7d_30C | Seven days - 30 degrees Celsius | 40.15 | 23.67 | 56.62 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.736114 | no |
| 3d_25C | 7d_25C | 0.335813 | no |
| 3d_25C | 7d_15C | 0.847794 | no |
| 3d_25C | 7d_30C | 0.689691 | no |
| 3d_25C | 10d_25C | 0.009124 | yes |
| 5d_25C | 7d_25C | 0.627916 | no |
| 5d_25C | 7d_15C | 0.911439 | no |
| 5d_25C | 7d_30C | 0.383092 | no |
| 5d_25C | 10d_25C | 0.048261 | yes |
| 7d_25C | 7d_15C | 0.518676 | no |
| 7d_25C | 7d_30C | 0.118691 | no |
| 7d_25C | 10d_25C | 0.208472 | no |
| 7d_15C | 7d_30C | 0.499832 | no |
| 7d_15C | 10d_25C | 0.027948 | yes |
| 7d_30C | 10d_25C | 0.000700 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g393.t1 MGKGTDKLYITHSEWASADAFSASAGAGVSKAKKGGPHAAFKRLPFNFCSLSLQPFSHPVCTPTGTLFDLTNILP WIKKHGTNPVDGAPLKSSDLIKLTLAKNEDGDYVDPVTYKILTDNTHIVALRNTGNVFSWDTVERLNIKGKLWRD LVTDEEFSRKDIITLQDPQNIESRNLSSFNYIKEGETGILEGQPTSGSVNTSALGSSAKILKAKEAVAKARSERA QQAGSAAIGSKVGSKTVAANVASKGQTGKPTPYNAARFTTGKAAASFTSTGLTPHTSAELAVLSEEEYMLKRGRV KAKAYARIVTTAGHLNLELYPEHAPKAVWNFLQLAKKGYYNDIPFHRNIKGFMLQGGDPTGTGRGGESIWGKYFA DEFEGPLKHDSRGTLSMANKGKNTNSSQFFIAYRALPHLNLKHTIFGRLIDDPTPSSTTLNKLEIHPVETTTNRP TPDIRIKEITVFVDPFEDFLAQKRAEEARATGATGPSAEEEEEISRRADDDRVTWTGKRVRGSEADSNDGGVSGV GKYLKAALEDRDGQEEDEIVEFLDEEIAPEPARKKAKVSGGFGNFSSW* |
| Coding | >Pro_DTO377G3_2|g393.t1 ATGGGAAAAGGAACCGATAAGCTTTATATCACACACTCCGAGTGGGCATCTGCAGATGCTTTCTCGGCCAGTGCT GGCGCTGGAGTTTCCAAGGCCAAGAAGGGCGGCCCCCACGCCGCGTTCAAGCGCTTGCCGTTCAATTTCTGTTCC CTTTCCCTCCAACCATTTTCACACCCGGTTTGCACGCCTACAGGAACACTATTCGACCTCACAAACATTCTGCCA TGGATCAAGAAGCATGGGACCAATCCTGTCGATGGGGCCCCATTGAAGAGCTCGGACTTGATTAAGTTGACTCTC GCGAAGAACGAGGATGGTGACTACGTCGATCCGGTGACCTACAAGATTCTGACCGATAATACACATATCGTCGCA TTACGGAATACAGGGAATGTCTTTTCCTGGGATACGGTGGAGCGACTCAACATCAAGGGAAAATTGTGGCGCGAC TTGGTCACGGATGAGGAATTCAGCCGAAAAGATATTATCACCTTGCAGGACCCGCAGAACATCGAGTCGCGCAAC CTCAGCTCGTTCAACTACATCAAGGAGGGGGAGACAGGAATCTTGGAAGGCCAACCGACCTCTGGGAGCGTCAAC ACCAGTGCACTCGGCAGCTCGGCGAAGATTCTGAAAGCGAAAGAGGCAGTTGCAAAGGCACGGTCAGAACGTGCT CAGCAGGCTGGTTCTGCTGCGATTGGCTCGAAAGTGGGTTCGAAGACTGTAGCTGCGAATGTAGCTTCTAAGGGG CAAACGGGAAAGCCAACACCCTACAACGCTGCACGATTCACTACGGGCAAGGCGGCTGCGTCGTTTACTAGCACC GGGCTGACGCCACACACGTCTGCCGAGCTAGCGGTACTATCGGAGGAGGAATACATGCTCAAGCGTGGCCGCGTG AAGGCCAAGGCTTACGCGCGCATTGTGACCACCGCCGGGCATCTCAATCTGGAGTTGTATCCCGAGCATGCGCCC AAAGCCGTGTGGAACTTCCTTCAGTTGGCCAAGAAGGGCTATTACAACGATATACCATTTCACCGTAATATCAAG GGCTTCATGCTCCAGGGTGGTGATCCAACTGGTACTGGACGAGGTGGCGAGAGTATTTGGGGCAAATACTTTGCC GATGAATTTGAAGGGCCTTTGAAGCACGATTCCCGAGGCACGCTGAGCATGGCCAACAAAGGCAAAAACACAAAT AGTAGTCAATTCTTCATCGCCTATCGAGCCCTACCTCATCTCAACCTCAAGCACACCATCTTCGGCCGTCTAATC GACGACCCAACGCCTTCGTCCACTACTTTGAATAAGCTAGAGATCCACCCAGTGGAAACAACTACGAATCGCCCT ACCCCCGATATTCGTATCAAGGAAATAACGGTCTTTGTAGATCCGTTCGAGGACTTCCTGGCCCAGAAGCGCGCC GAAGAGGCGCGGGCCACAGGTGCCACGGGTCCTTCTGCAGAAGAGGAAGAGGAGATTTCTCGCCGTGCGGACGAT GATCGAGTCACCTGGACTGGAAAGCGGGTCCGCGGTTCTGAGGCGGACTCAAATGATGGCGGTGTCTCGGGAGTT GGAAAGTATCTGAAGGCAGCACTGGAAGACCGGGATGGACAGGAAGAAGATGAGATTGTAGAGTTTCTGGACGAG GAGATTGCACCTGAGCCCGCTCGCAAAAAGGCCAAGGTGTCTGGAGGCTTTGGAAACTTTAGTTCATGGTAA |
| Transcript | >Pro_DTO377G3_2|g393.t1 ATGGGAAAAGGAACCGATAAGCTTTATATCACACACTCCGAGTGGGCATCTGCAGATGCTTTCTCGGCCAGTGCT GGCGCTGGAGTTTCCAAGGCCAAGAAGGGCGGCCCCCACGCCGCGTTCAAGCGCTTGCCGTTCAATTTCTGTTCC CTTTCCCTCCAACCATTTTCACACCCGGTTTGCACGCCTACAGGAACACTATTCGACCTCACAAACATTCTGCCA TGGATCAAGAAGCATGGGACCAATCCTGTCGATGGGGCCCCATTGAAGAGCTCGGACTTGATTAAGTTGACTCTC GCGAAGAACGAGGATGGTGACTACGTCGATCCGGTGACCTACAAGATTCTGACCGATAATACACATATCGTCGCA TTACGGAATACAGGGAATGTCTTTTCCTGGGATACGGTGGAGCGACTCAACATCAAGGGAAAATTGTGGCGCGAC TTGGTCACGGATGAGGAATTCAGCCGAAAAGATATTATCACCTTGCAGGACCCGCAGAACATCGAGTCGCGCAAC CTCAGCTCGTTCAACTACATCAAGGAGGGGGAGACAGGAATCTTGGAAGGCCAACCGACCTCTGGGAGCGTCAAC ACCAGTGCACTCGGCAGCTCGGCGAAGATTCTGAAAGCGAAAGAGGCAGTTGCAAAGGCACGGTCAGAACGTGCT CAGCAGGCTGGTTCTGCTGCGATTGGCTCGAAAGTGGGTTCGAAGACTGTAGCTGCGAATGTAGCTTCTAAGGGG CAAACGGGAAAGCCAACACCCTACAACGCTGCACGATTCACTACGGGCAAGGCGGCTGCGTCGTTTACTAGCACC GGGCTGACGCCACACACGTCTGCCGAGCTAGCGGTACTATCGGAGGAGGAATACATGCTCAAGCGTGGCCGCGTG AAGGCCAAGGCTTACGCGCGCATTGTGACCACCGCCGGGCATCTCAATCTGGAGTTGTATCCCGAGCATGCGCCC AAAGCCGTGTGGAACTTCCTTCAGTTGGCCAAGAAGGGCTATTACAACGATATACCATTTCACCGTAATATCAAG GGCTTCATGCTCCAGGGTGGTGATCCAACTGGTACTGGACGAGGTGGCGAGAGTATTTGGGGCAAATACTTTGCC GATGAATTTGAAGGGCCTTTGAAGCACGATTCCCGAGGCACGCTGAGCATGGCCAACAAAGGCAAAAACACAAAT AGTAGTCAATTCTTCATCGCCTATCGAGCCCTACCTCATCTCAACCTCAAGCACACCATCTTCGGCCGTCTAATC GACGACCCAACGCCTTCGTCCACTACTTTGAATAAGCTAGAGATCCACCCAGTGGAAACAACTACGAATCGCCCT ACCCCCGATATTCGTATCAAGGAAATAACGGTCTTTGTAGATCCGTTCGAGGACTTCCTGGCCCAGAAGCGCGCC GAAGAGGCGCGGGCCACAGGTGCCACGGGTCCTTCTGCAGAAGAGGAAGAGGAGATTTCTCGCCGTGCGGACGAT GATCGAGTCACCTGGACTGGAAAGCGGGTCCGCGGTTCTGAGGCGGACTCAAATGATGGCGGTGTCTCGGGAGTT GGAAAGTATCTGAAGGCAGCACTGGAAGACCGGGATGGACAGGAAGAAGATGAGATTGTAGAGTTTCTGGACGAG GAGATTGCACCTGAGCCCGCTCGCAAAAAGGCCAAGGTGTCTGGAGGCTTTGGAAACTTTAGTTCATGGTAA |
| Gene | >Pro_DTO377G3_2|g393.t1 ATGGGAAAAGGTATGTCGTGTGTGAGGGCTTTTTTGTACAATTTCACTAACGCTGTTGACTATAGGAACCGATAA GCTTTATGTACGCGACATTTTCCTCTACATTCCAATACTCGCATCTTGAATCCCCGCTGATAATTGTACTCTCTC TAGATCACACACTCCGAGTGGGCATCTGCAGATGCTTTCTCGGCCAGTGCTGGCGCTGGAGTTTCCAAGGCCAAG AAGGGCGGCCCCCACGCCGCGTTCAAGCGCTTGCCGTTCAATTTCTGTTCCCTTTCCCTCCAACCATTTTCACAC CCGGTTTGCACGCCTACAGGAACACTATTCGACCTCACAAACATTCTGCCATGGATCAAGAAGCATGGGACCAAT CCTGTCGATGGGGCCCCATTGAAGAGCTCGGACTTGATTAAGTTGACTCTCGCGAAGAACGAGGATGGTGACTAC GTCGATCCGGTGACCTACAAGATTCTGACCGATAATACACATATCGTCGCATTACGGAATACAGGGAATGTCTTT TCCTGGGATACGGTGGAGCGACTCAACATCAAGGGAAAATTGTGGCGCGACTTGGTCACGGATGAGGAATTCAGC CGAAAAGATATTATCACCTTGCAGGACCCGCAGAACATCGAGTCGCGCAACCTCAGCTCGTTCAACTACATCAAG GAGGGGGAGACAGGAATCTTGGAAGGCCAACCGACCTCTGGGAGCGTCAACACCAGTGCACTCGGCAGCTCGGCG AAGATTCTGAAAGCGAAAGAGGCAGTTGCAAAGGCACGGTCAGAACGTGCTCAGCAGGCTGGTTCTGCTGCGATT GGCTCGAAAGTGGGTTCGAAGACTGTAGCTGCGAATGTAGCTTCTAAGGGGCAAACGGGAAAGCCAACACCCTAC AACGCTGCACGATTCACTACGGGCAAGGCGGCTGCGTCGTTTACTAGCACCGGGCTGACGCCACACACGTCTGCC GAGCTAGCGGTACTATCGGAGGAGGAATACATGCTCAAGCGTGGCCGCGTGAAGGCCAAGGCTTACGCGCGCATT GTGACCACCGCCGGGCATCTCAATCTGGAGTTGTATCCCGAGCATGCGCCCAAAGCCGTGTGGAACTTCCTTCAG TTGGCCAAGAAGGGCTATTACAACGATATACCATTTCACCGTAATATCAAGGGCTTCATGCTCCAGGGTGGTGAT CCAACTGGTACTGGACGAGGTGGCGAGAGTATTTGGGGCAAATACTTTGCCGATGAATTTGAAGGGCCTTTGAAG CACGATTCCCGAGGCACGCTGAGCATGGCCAACAAAGGCAAAAACACAAATAGTAGTCAATTGTAAGTGGCCCCT TGCGATTACCCCTGGCTCAATGAGTGCGCTAACATGTGCTTTCAGCTTCATCGCCTATCGAGCCCTACCTCATCT CAACCTCAAGCACACCATCTTCGGCCGTCTAATCGACGACCCAACGCCTTCGTCCACTACTTTGAATAAGCTAGA GATCCACCCAGTGGAAACAACTACGAATCGCCCTACCCCCGATATTCGTATCAAGGAAATAACGGTCTTTGTAGA TCCGTTCGAGGACTTCCTGGCCCAGAAGCGCGCCGAAGAGGCGCGGGCCACAGGTGCCACGGGTCCTTCTGCAGA AGAGGAAGAGGAGATTTCTCGCCGTGCGGACGATGATCGAGTCACCTGGACTGGAAAGCGGGTCCGCGGTTCTGA GGCGGACTCAAATGATGGCGGTGTCTCGGGAGTTGGAAAGTATCTGAAGGCAGCACTGGAAGACCGGGATGGACA GGAAGAAGATGAGATTGTAGAGTTTCTGGACGAGGAGATTGCACCTGAGCCCGCTCGCAAAAAGGCCAAGGTGTC TGGAGGCTTTGGAAACTTTAGTTCATGGTAA |