© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3910.t1 |
| Gene name | |
| Location | scaffold_07:236127..236974 |
| Strand | + |
| Gene length (bp) | 847 |
| Transcript length (bp) | 678 |
| Coding sequence length (bp) | 678 |
| Protein length (aa) | 226 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05241 | EBP | EXPERA (EXPanded EBP superfamily) | 8.9E-22 | 94 | 207 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 69 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 26 | 48 | 22 |
| 2 | 61 | 83 | 22 |
| 3 | 117 | 139 | 22 |
| 4 | 146 | 168 | 22 |
| 5 | 183 | 205 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 29.25 | 12.81 | 45.68 |
| 5d_25C | Five days - 25 degrees Celsius | 22.94 | 9.33 | 36.56 |
| 7d_25C | Seven days - 25 degrees Celsius | 23.91 | 9.64 | 38.18 |
| 10d_25C | Ten days - 25 degrees Celsius | 23.07 | 9.82 | 36.32 |
| 7d_15C | Seven days - 15 degrees Celsius | 20.20 | 7.62 | 32.78 |
| 7d_30C | Seven days - 30 degrees Celsius | 27.85 | 12.18 | 43.52 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.534572 | no |
| 3d_25C | 7d_25C | 0.620054 | no |
| 3d_25C | 7d_15C | 0.305142 | no |
| 3d_25C | 7d_30C | 0.918731 | no |
| 3d_25C | 10d_25C | 0.528301 | no |
| 5d_25C | 7d_25C | 0.938579 | no |
| 5d_25C | 7d_15C | 0.793857 | no |
| 5d_25C | 7d_30C | 0.647161 | no |
| 5d_25C | 10d_25C | 0.991238 | no |
| 7d_25C | 7d_15C | 0.713337 | no |
| 7d_25C | 7d_30C | 0.733869 | no |
| 7d_25C | 10d_25C | 0.946247 | no |
| 7d_15C | 7d_30C | 0.400460 | no |
| 7d_15C | 10d_25C | 0.775471 | no |
| 7d_30C | 10d_25C | 0.646785 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3910.t1 MPSPPSHPYYPLDADVVGYQPNQTPVMELLVSAGGACTVLLGVTFALARYVKPTLRVADRIAILWFVLSGTLHCF FEGYFMIHHAHMASAQDLFGQLWKEYALSDSRYMTSDTLVLCMETMTVLLWGPLCFVVAYLTVIGHSLRHPIQVI VCMSHLYGDMLYYATSLFDEYVHGRPYSRPEPYYFWLYYFLMNFIWIVVPAYYLYQSISTISAALKRQSEKDKTN * |
| Coding | >Pro_DTO377G3_2|g3910.t1 ATGCCCAGTCCTCCATCTCATCCATATTACCCCTTGGATGCCGATGTTGTGGGTTATCAGCCCAACCAGACCCCG GTGATGGAGCTTCTCGTCTCTGCTGGTGGGGCCTGTACTGTCCTTCTTGGTGTGACTTTCGCATTGGCCAGATAT GTGAAACCCACACTGCGCGTGGCGGATCGAATCGCCATCCTGTGGTTTGTGCTCTCTGGAACTCTGCACTGCTTC TTCGAGGGTTATTTTATGATCCATCATGCCCACATGGCTTCTGCCCAAGATCTCTTTGGGCAACTATGGAAAGAA TACGCTCTGTCGGATTCCCGGTATATGACTTCGGACACATTGGTGTTATGTATGGAGACCATGACCGTGCTCCTG TGGGGACCACTGTGCTTTGTTGTTGCATACTTGACCGTAATCGGCCATTCCCTGCGCCACCCCATCCAGGTAATT GTGTGCATGAGCCATCTGTACGGCGACATGCTATATTATGCGACCAGTTTGTTTGACGAGTATGTCCACGGGCGA CCATATTCCCGACCGGAGCCGTATTATTTTTGGCTATATTACTTCCTCATGAACTTCATCTGGATTGTGGTCCCA GCGTACTATCTCTACCAAAGTATCTCCACAATCTCGGCCGCACTTAAACGCCAGTCGGAAAAGGACAAGACTAAC TAG |
| Transcript | >Pro_DTO377G3_2|g3910.t1 ATGCCCAGTCCTCCATCTCATCCATATTACCCCTTGGATGCCGATGTTGTGGGTTATCAGCCCAACCAGACCCCG GTGATGGAGCTTCTCGTCTCTGCTGGTGGGGCCTGTACTGTCCTTCTTGGTGTGACTTTCGCATTGGCCAGATAT GTGAAACCCACACTGCGCGTGGCGGATCGAATCGCCATCCTGTGGTTTGTGCTCTCTGGAACTCTGCACTGCTTC TTCGAGGGTTATTTTATGATCCATCATGCCCACATGGCTTCTGCCCAAGATCTCTTTGGGCAACTATGGAAAGAA TACGCTCTGTCGGATTCCCGGTATATGACTTCGGACACATTGGTGTTATGTATGGAGACCATGACCGTGCTCCTG TGGGGACCACTGTGCTTTGTTGTTGCATACTTGACCGTAATCGGCCATTCCCTGCGCCACCCCATCCAGGTAATT GTGTGCATGAGCCATCTGTACGGCGACATGCTATATTATGCGACCAGTTTGTTTGACGAGTATGTCCACGGGCGA CCATATTCCCGACCGGAGCCGTATTATTTTTGGCTATATTACTTCCTCATGAACTTCATCTGGATTGTGGTCCCA GCGTACTATCTCTACCAAAGTATCTCCACAATCTCGGCCGCACTTAAACGCCAGTCGGAAAAGGACAAGACTAAC TAG |
| Gene | >Pro_DTO377G3_2|g3910.t1 ATGCCCAGTCCTCCATCTCATCCATATTACCCCTTGGATGCCGATGTTGTGGGTTATCAGCCCAACCAGACCCCG GTGATGGAGCTTCTCGTCTCTGCTGGTGGGGCCTGTACTGTCCTTCTTGGTGTGACTTTCGCATTGGCCAGATAT GTGAAACCCACACTGCGCGTGGCGGATCGAATCGCCATCCTGTGGTTTGTGCTCTGTAAGGCGCCAAGATAAATA TCAGCTTGGAGGTTGAACACTGACAATGGGGATCTATAGCTGGAACTCTGCACTGCTTCTTCGAGGGTTATTTTA TGATCCATCATGCCCACATGGCTTCTGCCCAAGATCTCTTTGGGCAACTATGGAAAGAATACGCTCTGTCGGATT CCCGGTATATGACTTCGGACACATTGGTGTTATGTATGGAGACCATGACCGTGGTGAGTCCCACAGCTATATACA ACGCCGACGCTAGGATTCACCGCTGATTCCCACCAAGCTCCTGTGGGGACCACTGTGCTTTGTTGTTGCATACTT GACCGTAATCGGCCATTCCCTGCGCCACCCCATCCAGGTAATTGTGTGCATGAGCCATCTGTACGGCGACATGCT ATATTATGCGACCAGTTTGTTTGACGAGTATGTCCACGGGCGACCATATTCCCGACCGGAGCCGTATTATTTTTG GCTATATTACTTCCTCATGAACTTCATCTGGATTGTGGTCCCAGCGTGTATGCCCTACAGTCCCCGGGATGTCTG TTATAGGCTGACTTGGTTAATAGACTATCTCTACCAAAGTATCTCCACAATCTCGGCCGCACTTAAACGCCAGTC GGAAAAGGACAAGACTAACTAG |