© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3893.t1 |
| Gene name | |
| Location | scaffold_07:189693..191384 |
| Strand | - |
| Gene length (bp) | 1691 |
| Transcript length (bp) | 1629 |
| Coding sequence length (bp) | 1629 |
| Protein length (aa) | 543 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01151 | ELO | GNS1/SUR4 family | 7.0E-87 | 60 | 416 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0009922 | fatty acid elongase activity | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0016740 | transferase activity | No |
| GO:0016746 | acyltransferase activity | No |
| GO:0005575 | cellular_component | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0016747 | acyltransferase activity, transferring groups other than amino-acyl groups | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0004312 | fatty acid synthase activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 27 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 61 | 83 | 22 |
| 2 | 104 | 126 | 22 |
| 3 | 246 | 268 | 22 |
| 4 | 289 | 311 | 22 |
| 5 | 386 | 408 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 183.06 | 110.23 | 255.89 |
| 5d_25C | Five days - 25 degrees Celsius | 118.87 | 72.56 | 165.17 |
| 7d_25C | Seven days - 25 degrees Celsius | 106.56 | 64.99 | 148.14 |
| 10d_25C | Ten days - 25 degrees Celsius | 88.67 | 54.42 | 122.93 |
| 7d_15C | Seven days - 15 degrees Celsius | 147.16 | 88.48 | 205.84 |
| 7d_30C | Seven days - 30 degrees Celsius | 64.97 | 39.61 | 90.33 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.038386 | yes |
| 3d_25C | 7d_25C | 0.005626 | yes |
| 3d_25C | 7d_15C | 0.376766 | no |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.703224 | no |
| 5d_25C | 7d_15C | 0.380548 | no |
| 5d_25C | 7d_30C | 0.001804 | yes |
| 5d_25C | 10d_25C | 0.184336 | no |
| 7d_25C | 7d_15C | 0.146998 | no |
| 7d_25C | 7d_30C | 0.014971 | yes |
| 7d_25C | 10d_25C | 0.458726 | no |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.010083 | yes |
| 7d_30C | 10d_25C | 0.153159 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3893.t1 MHDFHVPTEFGQAIVRIAFPPASLLAFPPHELPVTVPAPHVDTPTWKQPFNIPNDLYNQVLDVRLPITIASVYAI TVVLLNRINKSRGYKPYAFSNTRLFKLFVVLHNVFLAVYSAWTFVGMFLAFRSSFPDTDDPYGLVGLVDSLCKIN GPRGYGNAATYSPITDEWSIPNPAFHLTNGMPDPTDAGRLWNQGLAYFGWFFYLSKFYEVVDTAIILAKGKKSST LQTYHHAGAMMCMWAGIRYMAAPIWIFCLVNSAIHAMMYTYYTLTALRIRVPNAIKRSLTTMQITQFVFGTNMAA AYLFVHYTIPYPSGSAALQHLTDAASAAASATTDVGAVSWLKKLAFRAAGAEGLAENVGTSFTAAPVQQSGYSQQ MMTCADTTGQAFAIWLNVSYLLPLTYLFARFFVRSYLNRKDVGVKQPTHMEAAEKAGMDALKSLSREIRKAAIEG ENSEATTDDEVIKAQAQKIAGKVTTPDSPVRTRSAAASKANAASAPVSRSESEQGFAKVPAKKGAKKQRAEESSS SPNTKGENPFGVLDNNA* |
| Coding | >Pro_DTO377G3_2|g3893.t1 ATGCACGACTTCCATGTGCCCACCGAGTTTGGCCAGGCGATTGTTCGCATTGCCTTCCCTCCCGCCTCTCTCCTC GCCTTCCCTCCCCATGAGCTTCCAGTGACCGTCCCCGCACCTCACGTTGACACCCCGACATGGAAGCAGCCCTTC AACATCCCGAACGATCTCTATAACCAGGTGCTGGACGTCCGACTACCAATCACAATCGCCAGTGTCTATGCGATC ACTGTGGTCCTGCTCAACCGTATCAACAAAAGTCGCGGATATAAGCCATACGCGTTCAGCAACACTCGTTTGTTC AAGCTCTTCGTCGTTCTTCACAATGTCTTCCTAGCTGTGTATTCCGCATGGACCTTCGTAGGCATGTTCCTGGCA TTCAGGAGCTCTTTCCCGGATACCGACGACCCCTACGGACTGGTCGGACTTGTGGATTCACTATGCAAGATCAAT GGGCCCCGCGGTTACGGCAATGCTGCTACATACAGCCCCATTACTGACGAGTGGTCGATTCCCAACCCCGCCTTC CACCTCACCAACGGCATGCCAGACCCCACGGATGCTGGCCGTCTATGGAACCAGGGCTTGGCTTACTTCGGCTGG TTCTTCTATCTGTCCAAGTTCTACGAGGTTGTCGACACCGCGATCATTCTGGCCAAGGGCAAGAAGAGCTCCACC CTACAGACCTACCACCACGCGGGAGCTATGATGTGCATGTGGGCTGGTATCCGCTACATGGCAGCTCCCATTTGG ATCTTCTGCTTGGTTAACTCGGCTATTCATGCTATGATGTACACCTACTATACCCTCACGGCCCTCCGCATTCGC GTCCCTAACGCCATCAAGCGCAGCTTGACCACCATGCAAATCACCCAGTTCGTCTTCGGAACTAACATGGCCGCC GCCTACCTATTTGTCCACTACACTATCCCCTACCCGTCCGGTAGCGCCGCCTTACAACACCTGACCGATGCCGCT TCCGCCGCTGCCTCTGCCACCACCGATGTTGGTGCGGTCTCCTGGTTGAAGAAGCTGGCATTCCGGGCTGCGGGC GCAGAAGGACTTGCCGAGAACGTGGGCACTTCTTTCACCGCCGCGCCTGTCCAGCAATCCGGCTACTCCCAGCAG ATGATGACCTGTGCGGACACCACCGGACAGGCATTCGCCATCTGGTTGAACGTTTCCTACCTTCTTCCCCTCACC TACCTCTTTGCGCGCTTCTTCGTCCGCTCCTACCTGAATCGCAAGGATGTAGGAGTGAAGCAGCCCACGCACATG GAGGCCGCTGAGAAGGCCGGCATGGATGCTCTGAAGAGTCTGAGCCGTGAAATTCGCAAGGCTGCCATCGAGGGC GAGAACAGCGAAGCTACCACTGACGATGAGGTCATCAAAGCTCAGGCCCAGAAGATCGCCGGCAAGGTTACCACC CCCGACTCGCCAGTCCGCACCCGCTCGGCTGCTGCTTCCAAGGCAAATGCTGCCTCGGCCCCGGTTAGCCGGTCC GAGTCTGAACAGGGGTTCGCTAAGGTTCCCGCGAAGAAGGGGGCTAAGAAGCAAAGGGCCGAGGAGTCTTCCTCT AGCCCGAACACAAAGGGCGAGAACCCATTCGGGGTATTGGATAACAATGCTTAA |
| Transcript | >Pro_DTO377G3_2|g3893.t1 ATGCACGACTTCCATGTGCCCACCGAGTTTGGCCAGGCGATTGTTCGCATTGCCTTCCCTCCCGCCTCTCTCCTC GCCTTCCCTCCCCATGAGCTTCCAGTGACCGTCCCCGCACCTCACGTTGACACCCCGACATGGAAGCAGCCCTTC AACATCCCGAACGATCTCTATAACCAGGTGCTGGACGTCCGACTACCAATCACAATCGCCAGTGTCTATGCGATC ACTGTGGTCCTGCTCAACCGTATCAACAAAAGTCGCGGATATAAGCCATACGCGTTCAGCAACACTCGTTTGTTC AAGCTCTTCGTCGTTCTTCACAATGTCTTCCTAGCTGTGTATTCCGCATGGACCTTCGTAGGCATGTTCCTGGCA TTCAGGAGCTCTTTCCCGGATACCGACGACCCCTACGGACTGGTCGGACTTGTGGATTCACTATGCAAGATCAAT GGGCCCCGCGGTTACGGCAATGCTGCTACATACAGCCCCATTACTGACGAGTGGTCGATTCCCAACCCCGCCTTC CACCTCACCAACGGCATGCCAGACCCCACGGATGCTGGCCGTCTATGGAACCAGGGCTTGGCTTACTTCGGCTGG TTCTTCTATCTGTCCAAGTTCTACGAGGTTGTCGACACCGCGATCATTCTGGCCAAGGGCAAGAAGAGCTCCACC CTACAGACCTACCACCACGCGGGAGCTATGATGTGCATGTGGGCTGGTATCCGCTACATGGCAGCTCCCATTTGG ATCTTCTGCTTGGTTAACTCGGCTATTCATGCTATGATGTACACCTACTATACCCTCACGGCCCTCCGCATTCGC GTCCCTAACGCCATCAAGCGCAGCTTGACCACCATGCAAATCACCCAGTTCGTCTTCGGAACTAACATGGCCGCC GCCTACCTATTTGTCCACTACACTATCCCCTACCCGTCCGGTAGCGCCGCCTTACAACACCTGACCGATGCCGCT TCCGCCGCTGCCTCTGCCACCACCGATGTTGGTGCGGTCTCCTGGTTGAAGAAGCTGGCATTCCGGGCTGCGGGC GCAGAAGGACTTGCCGAGAACGTGGGCACTTCTTTCACCGCCGCGCCTGTCCAGCAATCCGGCTACTCCCAGCAG ATGATGACCTGTGCGGACACCACCGGACAGGCATTCGCCATCTGGTTGAACGTTTCCTACCTTCTTCCCCTCACC TACCTCTTTGCGCGCTTCTTCGTCCGCTCCTACCTGAATCGCAAGGATGTAGGAGTGAAGCAGCCCACGCACATG GAGGCCGCTGAGAAGGCCGGCATGGATGCTCTGAAGAGTCTGAGCCGTGAAATTCGCAAGGCTGCCATCGAGGGC GAGAACAGCGAAGCTACCACTGACGATGAGGTCATCAAAGCTCAGGCCCAGAAGATCGCCGGCAAGGTTACCACC CCCGACTCGCCAGTCCGCACCCGCTCGGCTGCTGCTTCCAAGGCAAATGCTGCCTCGGCCCCGGTTAGCCGGTCC GAGTCTGAACAGGGGTTCGCTAAGGTTCCCGCGAAGAAGGGGGCTAAGAAGCAAAGGGCCGAGGAGTCTTCCTCT AGCCCGAACACAAAGGGCGAGAACCCATTCGGGGTATTGGATAACAATGCTTAA |
| Gene | >Pro_DTO377G3_2|g3893.t1 ATGCACGACTTCCATGTGCCCACCGAGTTTGGCCAGGCGATTGTTCGCATTGCCTTCCCTCCCGCCTCTCTCCTC GCCTTCCCTCCCCATGAGCTTCCAGTGACCGTCCCCGCACCTCACGTTGACACCCCGACATGGAAGCAGCCCTTC AACATCCCGAACGATCTCTATAACCAGGTGCTGGACGTCCGACTACCAATCACAATCGCCAGTGTCTATGCGATC ACTGTGGTCCTGCTCAACCGTATCAACAAAAGTCGCGGATATAAGCCATACGCGTTCAGCAACACTCGTTTGTTC AAGCTCTTCGTCGTTCTTCACAATGTCTTCCTAGCTGTGTATTCCGCATGGACCTTCGTAGGCATGTTCCTGGCA TTCAGGAGCTCTTTCCCGGATACCGACGACCCCTACGGACTGGTCGGACTTGTGGATTCACTATGCAAGATCAAT GGGCCCCGCGGTTACGGCAATGCTGCTACATACAGCCCCATTACTGACGAGTGGTCGATTCCCAACCCCGCCTTC CACCTCACCAACGGCATGCCAGACCCCACGGATGCTGGCCGTCTATGGAACCAGGGCTTGGCTTACTTCGGCTGG TTCTTCTATCTGTCCAAGTTCTACGAGGTTGTCGACACCGCGATCATTCTGGCCAAGGGCAAGAAGAGCTCCACC CTACAGACCTACCACCACGCGGGAGCTATGATGTGCATGTGGGCTGGTATCCGCTACATGGCAGCTCCCATTTGG ATCTTCTGCTTGGTTAACTCGGCTATTCATGCTATGATGGTAAGTCGGACAATCGCATTGCTTTTGTTAAGCAAA CTTACTAACCCTTTTTTTTACTTCAGTACACCTACTATACCCTCACGGCCCTCCGCATTCGCGTCCCTAACGCCA TCAAGCGCAGCTTGACCACCATGCAAATCACCCAGTTCGTCTTCGGAACTAACATGGCCGCCGCCTACCTATTTG TCCACTACACTATCCCCTACCCGTCCGGTAGCGCCGCCTTACAACACCTGACCGATGCCGCTTCCGCCGCTGCCT CTGCCACCACCGATGTTGGTGCGGTCTCCTGGTTGAAGAAGCTGGCATTCCGGGCTGCGGGCGCAGAAGGACTTG CCGAGAACGTGGGCACTTCTTTCACCGCCGCGCCTGTCCAGCAATCCGGCTACTCCCAGCAGATGATGACCTGTG CGGACACCACCGGACAGGCATTCGCCATCTGGTTGAACGTTTCCTACCTTCTTCCCCTCACCTACCTCTTTGCGC GCTTCTTCGTCCGCTCCTACCTGAATCGCAAGGATGTAGGAGTGAAGCAGCCCACGCACATGGAGGCCGCTGAGA AGGCCGGCATGGATGCTCTGAAGAGTCTGAGCCGTGAAATTCGCAAGGCTGCCATCGAGGGCGAGAACAGCGAAG CTACCACTGACGATGAGGTCATCAAAGCTCAGGCCCAGAAGATCGCCGGCAAGGTTACCACCCCCGACTCGCCAG TCCGCACCCGCTCGGCTGCTGCTTCCAAGGCAAATGCTGCCTCGGCCCCGGTTAGCCGGTCCGAGTCTGAACAGG GGTTCGCTAAGGTTCCCGCGAAGAAGGGGGCTAAGAAGCAAAGGGCCGAGGAGTCTTCCTCTAGCCCGAACACAA AGGGCGAGAACCCATTCGGGGTATTGGATAACAATGCTTAA |