Fungal Genomics

General Properties

Protein ID	Pro_DTO377G3_2|g3879.t1
Gene name
Location	scaffold_07:156315..156991
Strand	-
Gene length (bp)	676
Transcript length (bp)	537
Coding sequence length (bp)	537
Protein length (aa)	179

Overview

Your browser does not support drawing a protein figure.

PFAM Domains

(None)

GO

(None)

Deeploc

Deeploc data not available for this genome

SignalP

SignalP signal predicted	Location	Score
Yes	1 - 21	0.999745

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
3d_25C	Three days - 25 degrees Celsius	673.56	406.53	940.60
5d_25C	Five days - 25 degrees Celsius	225.21	131.33	319.10
7d_25C	Seven days - 25 degrees Celsius	239.70	135.82	343.59
10d_25C	Ten days - 25 degrees Celsius	52.52	20.87	84.17
7d_15C	Seven days - 15 degrees Celsius	271.83	152.74	390.92
7d_30C	Seven days - 30 degrees Celsius	38.31	15.84	60.78

Differential expression

Label1	Label2	Q-value	Significant difference
3d_25C	5d_25C	0.000700	yes
3d_25C	7d_25C	0.000700	yes
3d_25C	7d_15C	0.000700	yes
3d_25C	7d_30C	0.000700	yes
3d_25C	10d_25C	0.000700	yes
5d_25C	7d_25C	0.855090	no
5d_25C	7d_15C	0.486462	no
5d_25C	7d_30C	0.000700	yes
5d_25C	10d_25C	0.000700	yes
7d_25C	7d_15C	0.683125	no
7d_25C	7d_30C	0.000700	yes
7d_25C	10d_25C	0.000700	yes
7d_15C	7d_30C	0.000700	yes
7d_15C	10d_25C	0.000700	yes
7d_30C	10d_25C	0.388847	no

Orthologs

Orthofinder run ID	2
Orthogroup	6674
Change Orthofinder run	2: Penicillium roqueforti - all strains

Species	Protein ID
Penicillium roqueforti DTO002I6	Pro_DTO002I6_2|g7317.t1
Penicillium roqueforti DTO003C3	Pro_DTO003C3_2|g9593.t1
Penicillium roqueforti DTO003H1 (CBS 147308)	Pro_DTO003H1_2|g5001.t1
Penicillium roqueforti DTO006G1	Pro_DTO006G1_2|g8454.t1
Penicillium roqueforti DTO006G7	Pro_DTO006G7_3|g5681.t1
Penicillium roqueforti DTO012A1	Pro_DTO012A1_2|g8126.t1
Penicillium roqueforti DTO012A2 (CBS 147309)	Pro_DTO012A2_2|g9381.t1
Penicillium roqueforti DTO012A6 (CBS 147310)	Pro_DTO012A6_2|g8602.t1
Penicillium roqueforti DTO012A7	Pro_DTO012A7_2|g6512.t1
Penicillium roqueforti DTO012A8	Pro_DTO012A8_2|g5781.t1
Penicillium roqueforti DTO012A9	Pro_DTO012A9_2|g6145.t1
Penicillium roqueforti DTO013E5	Pro_DTO013E5_2|g8229.t1
Penicillium roqueforti DTO013F2	Pro_DTO013F2_2|g8660.t1
Penicillium roqueforti DTO013F5 (CBS 147311)	Pro_DTO013F5_2|g8826.t1
Penicillium roqueforti DTO027I6	Pro_DTO027I6_2|g9926.t1
Penicillium roqueforti DTO032C6	Pro_DTO032C6_2|g7858.t1
Penicillium roqueforti DTO039G3	Pro_DTO039G3_2|g8911.t1
Penicillium roqueforti DTO046C5	Pro_DTO046C5_2|g9267.t1
Penicillium roqueforti DTO070G2 (CBS 147317)	Pro_DTO070G2_2|g7614.t1
Penicillium roqueforti DTO081F9 (CBS 147318)	Pro_DTO081F9_2|g9655.t1
Penicillium roqueforti DTO101D6 (CBS 147325)	Pro_DTO101D6_2|g8581.t1
Penicillium roqueforti DTO102I9 (CBS 147326)	Pro_DTO102I9_2|g711.t1
Penicillium roqueforti DTO126G2 (CBS 147330)	Pro_DTO126G2_2|g7816.t1
Penicillium roqueforti DTO127F7 (CBS 147331)	Pro_DTO127F7_2|g8117.t1
Penicillium roqueforti DTO127F9 (CBS 147332)	Pro_DTO127F9_2|g7145.t1
Penicillium roqueforti DTO130C1 (CBS 147333)	Pro_DTO130C1_2|g4711.t1
Penicillium roqueforti DTO163C3 (CBS 147337)	Pro_DTO163C3_2|g9374.t1
Penicillium roqueforti DTO163F5 (CBS 147338)	Pro_DTO163F5_2|g8171.t1
Penicillium roqueforti DTO163G4 (CBS 147339)	Pro_DTO163G4_2|g8121.t1
Penicillium roqueforti DTO265D5 (CBS 147372)	Pro_DTO265D5_2|g7969.t1
Penicillium roqueforti DTO369A1 (CBS 147354)	Pro_DTO369A1_2|g9220.t1
Penicillium roqueforti DTO375B1 (CBS 147355)	Pro_DTO375B1_2|g9644.t1
Penicillium roqueforti DTO377G2 (LCP 96.3914a)	Pro_DTO377G2_2|g5091.t1
Penicillium roqueforti LCP96 04111	Pro_DTO377G3_2|g3879.t1 (this protein)

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus Download genbank file of locus (reverse complement) The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Pro_DTO377G3_2|g3879.t1 MHSFTTHLSLLFAASATLIAAQDATSQSTSGNSNCASQKVVDSCVAIMKRGLAKCASNDWDCKCSGAANIANCYV DCSDDDPDSFAAKQLSVNDCATANAYDQGETTVAPSWTLPGSNAAQPTDTDATLTTSSSSSTTAGPTKTFANEKS TSPSEGAAVVNDAGSWMALVVLGLGAAF*
Coding	>Pro_DTO377G3_2|g3879.t1 ATGCATTCTTTTACTACTCATCTCTCCCTTCTATTTGCTGCATCGGCTACCCTTATCGCCGCTCAAGATGCCACA TCCCAAAGCACAAGCGGCAACTCGAACTGTGCTTCTCAAAAAGTTGTAGATTCATGCGTTGCGATAATGAAACGT GGACTCGCAAAGTGTGCCTCGAATGATTGGGACTGCAAGTGCTCGGGGGCTGCAAACATTGCCAACTGTTACGTA GATTGCTCCGATGATGACCCGGATTCGTTCGCGGCCAAACAACTGAGTGTAAATGATTGCGCTACCGCAAATGCA TACGACCAAGGAGAGACTACCGTCGCACCCTCGTGGACTCTTCCTGGATCAAATGCGGCACAGCCAACCGACACA GATGCTACTTTGACCACTAGTAGCAGCTCGTCTACTACTGCCGGACCGACTAAAACCTTTGCGAATGAGAAGTCG ACGAGTCCATCAGAGGGAGCTGCGGTTGTGAATGATGCTGGTAGTTGGATGGCTCTTGTGGTTCTAGGGCTAGGG GCTGCATTTTGA
Transcript	>Pro_DTO377G3_2|g3879.t1 ATGCATTCTTTTACTACTCATCTCTCCCTTCTATTTGCTGCATCGGCTACCCTTATCGCCGCTCAAGATGCCACA TCCCAAAGCACAAGCGGCAACTCGAACTGTGCTTCTCAAAAAGTTGTAGATTCATGCGTTGCGATAATGAAACGT GGACTCGCAAAGTGTGCCTCGAATGATTGGGACTGCAAGTGCTCGGGGGCTGCAAACATTGCCAACTGTTACGTA GATTGCTCCGATGATGACCCGGATTCGTTCGCGGCCAAACAACTGAGTGTAAATGATTGCGCTACCGCAAATGCA TACGACCAAGGAGAGACTACCGTCGCACCCTCGTGGACTCTTCCTGGATCAAATGCGGCACAGCCAACCGACACA GATGCTACTTTGACCACTAGTAGCAGCTCGTCTACTACTGCCGGACCGACTAAAACCTTTGCGAATGAGAAGTCG ACGAGTCCATCAGAGGGAGCTGCGGTTGTGAATGATGCTGGTAGTTGGATGGCTCTTGTGGTTCTAGGGCTAGGG GCTGCATTTTGA
Gene	>Pro_DTO377G3_2|g3879.t1 ATGCATTCTTTTACTACTCATCTCTCCCTTCTATTTGCTGCATCGGCTACCCTTATCGCCGCTCAAGATGCCACA TCCCAAAGCACAAGCGGCAACTCGAACTGTGCTTCTCAAAAGTAAGCTCATAAGCCTATGAAATTCTGTTGAGAT TCCTTTCTCATAATCAACAGAGTTGTAGATTCATGCGTTGCGATAATGAAACGTGGACTCGCAAAGTGTGCCTCG AATGATTGGGACTGCAAGTGCTCGGGGGCTGCAAACATTGCCAAGTAAGTAGGCCACCTACTTGACTCTCGTAAT TCCTCAATGAGATGTCTATACACTCAACACCGCAGTACTGATATAATCGAGCAGCTGTTACGTAGATTGCTCCGA TGATGACCCGGATTCGTTCGCGGCCAAACAACTGAGTGTAAATGATTGCGCTACCGCAAATGCATACGACCAAGG AGAGACTACCGTCGCACCCTCGTGGACTCTTCCTGGATCAAATGCGGCACAGCCAACCGACACAGATGCTACTTT GACCACTAGTAGCAGCTCGTCTACTACTGCCGGACCGACTAAAACCTTTGCGAATGAGAAGTCGACGAGTCCATC AGAGGGAGCTGCGGTTGTGAATGATGCTGGTAGTTGGATGGCTCTTGTGGTTCTAGGGCTAGGGGCTGCATTTTG A