© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g386.t1 |
| Gene name | |
| Location | scaffold_01:983062..984376 |
| Strand | - |
| Gene length (bp) | 1314 |
| Transcript length (bp) | 1191 |
| Coding sequence length (bp) | 1191 |
| Protein length (aa) | 397 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00026 | Asp | Eukaryotic aspartyl protease | 2.5E-73 | 87 | 394 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 23 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 4.70 | 1.28 | 8.13 |
| 5d_25C | Five days - 25 degrees Celsius | 3.86 | 0.83 | 6.89 |
| 7d_25C | Seven days - 25 degrees Celsius | 3.02 | 0.58 | 5.47 |
| 10d_25C | Ten days - 25 degrees Celsius | 2.03 | 0.07 | 3.99 |
| 7d_15C | Seven days - 15 degrees Celsius | 2.82 | 0.49 | 5.16 |
| 7d_30C | Seven days - 30 degrees Celsius | 3.63 | 0.76 | 6.49 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.727818 | no |
| 3d_25C | 7d_25C | 0.341623 | no |
| 3d_25C | 7d_15C | 0.262227 | no |
| 3d_25C | 7d_30C | 0.627342 | no |
| 3d_25C | 10d_25C | 0.089066 | no |
| 5d_25C | 7d_25C | 0.657396 | no |
| 5d_25C | 7d_15C | 0.552026 | no |
| 5d_25C | 7d_30C | 0.926425 | no |
| 5d_25C | 10d_25C | 0.219039 | no |
| 7d_25C | 7d_15C | 0.921137 | no |
| 7d_25C | 7d_30C | 0.758099 | no |
| 7d_25C | 10d_25C | 0.486436 | no |
| 7d_15C | 7d_30C | 0.655845 | no |
| 7d_15C | 10d_25C | 0.580477 | no |
| 7d_30C | 10d_25C | 0.283136 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g386.t1 MVVFSQVTVALTCFSAIASAAAVPVKSPRKGFTVNQVQKAVPGTRTVNLPGLYANALVKYGATVPATVHAAAVSG SAITTPEADDVEYLTPVTIGSSTLNLDFDTGSADLWVFSSELTSSQQSGHDVYNVGSSGTKLSGASWSISYGDGS SASGDVYKDTVTVGGVKATGQAVEAAKKISSQFLQDKNNDGLLGLAFSSINTVSPTPQKTFFDTVKSSLGEPLFA VTLKHGAPGTYDFGYIDSDKYTGTLAYADVDDSDGFWSFTADSYKIGTGAAGKSITGIADTGTTLLLLDSSIVTA YYKKVTGSQNSSSAGGYIFPCSATLPDFTVTINGYDAVVPGKYINFAPVSTGSSSCYGGIQSNSGIGFSIFGDIF LKSQYVVFDSEGPRLGFAAQA* |
| Coding | >Pro_DTO377G3_2|g386.t1 ATGGTTGTCTTCAGCCAAGTTACCGTCGCTCTCACCTGCTTCTCGGCCATTGCTTCAGCTGCGGCTGTGCCGGTC AAGAGCCCCCGCAAGGGCTTCACTGTGAACCAGGTGCAGAAGGCTGTTCCCGGTACCAGGACTGTCAACTTGCCT GGTCTGTACGCCAATGCACTGGTCAAGTATGGTGCTACTGTGCCGGCCACAGTTCACGCTGCTGCCGTGAGCGGT TCCGCCATTACCACGCCCGAGGCCGACGACGTTGAGTATCTCACTCCAGTCACCATTGGCAGCTCTACCTTGAAC TTGGACTTCGACACTGGCTCTGCTGACCTCTGGGTCTTCTCTAGCGAGCTTACCTCTTCGCAGCAGTCCGGCCAC GACGTCTACAACGTTGGCAGCTCCGGCACTAAGCTGTCCGGTGCTAGCTGGTCCATTTCATACGGCGATGGCAGC AGTGCTAGCGGTGATGTCTACAAGGACACCGTCACTGTTGGTGGAGTCAAGGCCACTGGCCAAGCTGTTGAGGCT GCCAAGAAGATCAGCTCGCAGTTCCTGCAGGACAAGAACAACGATGGTCTGCTGGGTCTGGCTTTCAGCTCCATC AACACCGTCAGCCCTACCCCCCAGAAGACCTTCTTCGACACCGTCAAGTCTAGCCTTGGCGAGCCTCTGTTCGCC GTGACTCTCAAGCACGGCGCCCCTGGCACCTACGACTTCGGCTACATCGACTCGGATAAGTACACCGGAACTTTG GCCTACGCCGACGTTGATGACTCCGATGGTTTCTGGTCCTTCACTGCCGACAGCTACAAGATCGGCACTGGTGCT GCTGGCAAGTCTATTACCGGAATTGCTGATACCGGTACCACTCTCCTCCTGCTCGATAGCTCTATTGTCACCGCC TACTACAAGAAGGTTACCGGCTCCCAGAACAGCAGCTCTGCTGGTGGTTATATCTTCCCTTGCAGCGCCACTCTG CCTGACTTCACTGTGACCATCAATGGCTACGATGCCGTTGTTCCCGGCAAGTACATCAACTTCGCACCTGTCTCT ACCGGTAGCTCCAGCTGCTACGGTGGTATCCAGAGCAACTCTGGCATTGGCTTCTCCATCTTCGGTGATATCTTC CTCAAGAGCCAGTACGTCGTTTTCGACTCCGAGGGACCTCGTCTTGGCTTCGCTGCCCAGGCATAA |
| Transcript | >Pro_DTO377G3_2|g386.t1 ATGGTTGTCTTCAGCCAAGTTACCGTCGCTCTCACCTGCTTCTCGGCCATTGCTTCAGCTGCGGCTGTGCCGGTC AAGAGCCCCCGCAAGGGCTTCACTGTGAACCAGGTGCAGAAGGCTGTTCCCGGTACCAGGACTGTCAACTTGCCT GGTCTGTACGCCAATGCACTGGTCAAGTATGGTGCTACTGTGCCGGCCACAGTTCACGCTGCTGCCGTGAGCGGT TCCGCCATTACCACGCCCGAGGCCGACGACGTTGAGTATCTCACTCCAGTCACCATTGGCAGCTCTACCTTGAAC TTGGACTTCGACACTGGCTCTGCTGACCTCTGGGTCTTCTCTAGCGAGCTTACCTCTTCGCAGCAGTCCGGCCAC GACGTCTACAACGTTGGCAGCTCCGGCACTAAGCTGTCCGGTGCTAGCTGGTCCATTTCATACGGCGATGGCAGC AGTGCTAGCGGTGATGTCTACAAGGACACCGTCACTGTTGGTGGAGTCAAGGCCACTGGCCAAGCTGTTGAGGCT GCCAAGAAGATCAGCTCGCAGTTCCTGCAGGACAAGAACAACGATGGTCTGCTGGGTCTGGCTTTCAGCTCCATC AACACCGTCAGCCCTACCCCCCAGAAGACCTTCTTCGACACCGTCAAGTCTAGCCTTGGCGAGCCTCTGTTCGCC GTGACTCTCAAGCACGGCGCCCCTGGCACCTACGACTTCGGCTACATCGACTCGGATAAGTACACCGGAACTTTG GCCTACGCCGACGTTGATGACTCCGATGGTTTCTGGTCCTTCACTGCCGACAGCTACAAGATCGGCACTGGTGCT GCTGGCAAGTCTATTACCGGAATTGCTGATACCGGTACCACTCTCCTCCTGCTCGATAGCTCTATTGTCACCGCC TACTACAAGAAGGTTACCGGCTCCCAGAACAGCAGCTCTGCTGGTGGTTATATCTTCCCTTGCAGCGCCACTCTG CCTGACTTCACTGTGACCATCAATGGCTACGATGCCGTTGTTCCCGGCAAGTACATCAACTTCGCACCTGTCTCT ACCGGTAGCTCCAGCTGCTACGGTGGTATCCAGAGCAACTCTGGCATTGGCTTCTCCATCTTCGGTGATATCTTC CTCAAGAGCCAGTACGTCGTTTTCGACTCCGAGGGACCTCGTCTTGGCTTCGCTGCCCAGGCATAA |
| Gene | >Pro_DTO377G3_2|g386.t1 ATGGTTGTCTTCAGCCAAGTTACCGTCGCTCTCACCTGCTTCTCGGCCATTGCTTCAGCTGCGGCTGTGCCGGTC AAGAGCCCCCGCAAGGGCTTCACTGTGAACCAGGTGCAGAAGGCTGTTCCCGGTACCAGGACTGTCAACTTGCCT GGTCTGTACGCCAATGCACTGGTCAAGTATGGTGCTACTGTGCCGGCCACAGTTCACGCTGCTGCCGTGAGCGGT TCCGCCATTACCACGCCCGAGGCCGACGACGTTGAGTATCTCACTCCAGTCACCATTGGCAGCTCTACCTTGAAC TTGGACTTCGACACTGGCTCTGCTGACCTGTAAGTTGGTTGATATGGCATGACTAGCAAGGGCAACAACTGACAA TTCATATAGCTGGGTCTTCTCTAGCGAGCTTACCTCTTCGCAGCAGTCCGGCCACGACGTCTACAACGTTGGCAG CTCCGGCACTAAGCTGTCCGGTGCTAGCTGGTCCATTTCATACGGCGATGGCAGCAGTGCTAGCGGTGATGTCTA CAAGGACACCGTCACTGTTGGTGGAGTCAAGGCCACTGGCCAAGCTGTTGAGGCTGCCAAGAAGATCAGCTCGCA GTTCCTGCAGGACAAGAACAACGATGGTCTGCTGGGTCTGGCTTTCAGCTCCATCAACACCGTCAGCCCTACCCC CCAGAAGACCTTCTTCGACACCGTCAAGTCTAGCCTTGGCGAGCCTCTGTTCGCCGTGACTCTCAAGCACGGCGC CCCTGGCACCTACGACTTCGGCTACATCGACTCGGATAAGTACACCGGAACTTTGGCCTACGCCGACGTTGATGA CTCCGATGGTTTCTGGTCCTTCACTGCCGACAGCTACAAGATCGGCACTGGTGCTGCTGGCAAGTCTATTACCGG AATTGCTGGTGAGTTACATTCTCCCTTGTGGACATCCATGCTTTGTTTACCATGACTAATCTCTTGAATTGTATA GATACCGGTACCACTCTCCTCCTGCTCGATAGCTCTATTGTCACCGCCTACTACAAGAAGGTTACCGGCTCCCAG AACAGCAGCTCTGCTGGTGGTTATATCTTCCCTTGCAGCGCCACTCTGCCTGACTTCACTGTGACCATCAATGGC TACGATGCCGTTGTTCCCGGCAAGTACATCAACTTCGCACCTGTCTCTACCGGTAGCTCCAGCTGCTACGGTGGT ATCCAGAGCAACTCTGGCATTGGCTTCTCCATCTTCGGTGATATCTTCCTCAAGAGCCAGTACGTCGTTTTCGAC TCCGAGGGACCTCGTCTTGGCTTCGCTGCCCAGGCATAA |