© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3854.t1 |
| Gene name | |
| Location | scaffold_07:82313..84032 |
| Strand | + |
| Gene length (bp) | 1719 |
| Transcript length (bp) | 1650 |
| Coding sequence length (bp) | 1650 |
| Protein length (aa) | 550 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03467 | Smg4_UPF3 | Smg-4/UPF3 family | 4.1E-44 | 37 | 205 |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 3.8E-06 | 415 | 460 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 33.16 | 19.12 | 47.20 |
| 5d_25C | Five days - 25 degrees Celsius | 33.86 | 19.53 | 48.20 |
| 7d_25C | Seven days - 25 degrees Celsius | 29.90 | 16.85 | 42.95 |
| 10d_25C | Ten days - 25 degrees Celsius | 29.89 | 16.79 | 43.00 |
| 7d_15C | Seven days - 15 degrees Celsius | 28.26 | 15.80 | 40.71 |
| 7d_30C | Seven days - 30 degrees Celsius | 36.01 | 20.96 | 51.05 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.954401 | no |
| 3d_25C | 7d_25C | 0.745559 | no |
| 3d_25C | 7d_15C | 0.583699 | no |
| 3d_25C | 7d_30C | 0.799436 | no |
| 3d_25C | 10d_25C | 0.747854 | no |
| 5d_25C | 7d_25C | 0.686048 | no |
| 5d_25C | 7d_15C | 0.519287 | no |
| 5d_25C | 7d_30C | 0.858223 | no |
| 5d_25C | 10d_25C | 0.686701 | no |
| 7d_25C | 7d_15C | 0.877189 | no |
| 7d_25C | 7d_30C | 0.511725 | no |
| 7d_25C | 10d_25C | 0.999235 | no |
| 7d_15C | 7d_30C | 0.359339 | no |
| 7d_15C | 10d_25C | 0.876112 | no |
| 7d_30C | 10d_25C | 0.515288 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3854.t1 MQPGKTTAGLLPIPAAATQKSGSGAPARKTPKPPAPRLKLLIRRLPPGLTQAELESALGDQWKAGAGNVDWLQYK PGKVSKDPNKPSRPSRAYIHVVSTECVSLLSDAVRQASFQDARNTLHDPILLGPPSLEFAPYAKTPGSRSRKDAR QGTIDQDSDFIAFLESLTQPITRPVAVDSTPDGEDKKKQAVMTTPLVQFIKDKKASKLKDGSGSKSKHSRSDKES KQEKVQAKKLLQRGDKEPSANSSDKKPKGEKTSKDSVKATKQGAAANAKGGKSSTTSNATKDTAAAPERKRERGN VTAATKILQRDLGLSTSGGRRRGKGTSTDTASPKNESSRDSAIPSADLSKETTRPPKTASSSTNAPKPKDSESSS RPDAAPPPPATLPAKSTKAGKSKHPSTAKQAFLKHANPSQGVTEALLQSAFTPFGAVTKVEIDKKKGFGYIDFAE PEALRKAIAASPVSVAQSQVVVLERKENPGIEKSRKGREGFTANKTKAPTEASGSTSGAGGHVTGGNAGSSRGSR GGRGSRNKGPKSGASEKTGGTEAE* |
| Coding | >Pro_DTO377G3_2|g3854.t1 ATGCAGCCTGGCAAGACCACCGCCGGTCTACTCCCAATTCCGGCAGCAGCTACGCAAAAGTCGGGCTCTGGAGCG CCCGCAAGGAAAACGCCTAAGCCTCCTGCTCCACGTCTCAAACTTCTCATTCGACGTTTGCCACCCGGGCTAACA CAGGCCGAGCTGGAGAGTGCTCTTGGGGACCAGTGGAAGGCTGGAGCAGGGAACGTTGACTGGCTTCAGTACAAA CCTGGCAAGGTGTCGAAAGACCCCAACAAACCGTCTCGCCCGTCAAGAGCATACATACACGTCGTGTCCACCGAA TGTGTCTCTTTGCTCTCGGACGCTGTGCGCCAGGCTTCTTTCCAGGATGCCCGTAACACTCTACACGACCCCATT TTGCTGGGGCCTCCGTCGCTGGAGTTTGCACCTTATGCCAAGACCCCCGGAAGCCGCTCGCGCAAGGATGCTCGT CAAGGCACGATTGATCAAGATTCAGACTTCATCGCTTTCTTAGAAAGCCTGACCCAGCCCATTACCAGGCCTGTG GCTGTGGATTCTACACCCGATGGCGAGGACAAGAAGAAGCAAGCCGTAATGACCACCCCGCTGGTACAGTTCATC AAAGACAAGAAAGCCAGCAAGTTAAAGGACGGCAGTGGGTCCAAATCTAAACACAGTCGGTCGGACAAGGAATCA AAGCAGGAGAAGGTACAAGCAAAGAAACTTCTACAACGAGGCGATAAGGAACCCTCGGCAAACTCTTCCGACAAG AAACCCAAAGGAGAAAAGACAAGCAAAGACTCTGTCAAAGCAACCAAACAAGGAGCCGCTGCCAATGCCAAGGGA GGCAAGTCGAGTACGACATCAAACGCTACAAAGGATACAGCCGCGGCTCCAGAGCGGAAGAGAGAGCGCGGAAAT GTCACAGCAGCCACCAAGATTCTTCAGCGTGATCTTGGACTATCGACATCTGGTGGGCGACGACGCGGGAAAGGT ACTTCGACTGATACTGCGTCACCTAAGAACGAGAGCTCTCGAGACTCGGCTATTCCATCAGCCGATCTGTCCAAG GAAACAACCAGGCCTCCTAAAACCGCATCATCCTCAACCAATGCTCCAAAGCCCAAGGACAGCGAGTCATCCTCG CGACCCGATGCGGCTCCACCGCCACCTGCAACCTTACCAGCCAAGTCCACTAAAGCTGGCAAATCCAAGCACCCA TCAACTGCTAAACAAGCATTCCTCAAGCACGCCAATCCATCCCAGGGTGTGACCGAGGCACTTCTGCAGTCTGCA TTCACCCCATTTGGAGCAGTGACGAAGGTCGAGATTGACAAGAAGAAGGGATTCGGATACATAGATTTTGCTGAA CCGGAAGCACTTCGCAAGGCCATCGCTGCTAGTCCCGTATCGGTGGCCCAGAGCCAAGTGGTGGTCTTGGAGCGG AAAGAGAACCCCGGAATCGAAAAGTCTCGGAAGGGACGTGAGGGGTTCACTGCCAACAAGACGAAGGCTCCCACG GAAGCTTCTGGGAGCACTTCAGGTGCTGGCGGTCATGTAACTGGAGGTAACGCTGGCTCCTCCCGCGGATCTCGT GGAGGGCGTGGATCACGGAATAAGGGACCCAAGAGTGGAGCTTCAGAGAAAACTGGAGGCACCGAGGCGGAGTGA |
| Transcript | >Pro_DTO377G3_2|g3854.t1 ATGCAGCCTGGCAAGACCACCGCCGGTCTACTCCCAATTCCGGCAGCAGCTACGCAAAAGTCGGGCTCTGGAGCG CCCGCAAGGAAAACGCCTAAGCCTCCTGCTCCACGTCTCAAACTTCTCATTCGACGTTTGCCACCCGGGCTAACA CAGGCCGAGCTGGAGAGTGCTCTTGGGGACCAGTGGAAGGCTGGAGCAGGGAACGTTGACTGGCTTCAGTACAAA CCTGGCAAGGTGTCGAAAGACCCCAACAAACCGTCTCGCCCGTCAAGAGCATACATACACGTCGTGTCCACCGAA TGTGTCTCTTTGCTCTCGGACGCTGTGCGCCAGGCTTCTTTCCAGGATGCCCGTAACACTCTACACGACCCCATT TTGCTGGGGCCTCCGTCGCTGGAGTTTGCACCTTATGCCAAGACCCCCGGAAGCCGCTCGCGCAAGGATGCTCGT CAAGGCACGATTGATCAAGATTCAGACTTCATCGCTTTCTTAGAAAGCCTGACCCAGCCCATTACCAGGCCTGTG GCTGTGGATTCTACACCCGATGGCGAGGACAAGAAGAAGCAAGCCGTAATGACCACCCCGCTGGTACAGTTCATC AAAGACAAGAAAGCCAGCAAGTTAAAGGACGGCAGTGGGTCCAAATCTAAACACAGTCGGTCGGACAAGGAATCA AAGCAGGAGAAGGTACAAGCAAAGAAACTTCTACAACGAGGCGATAAGGAACCCTCGGCAAACTCTTCCGACAAG AAACCCAAAGGAGAAAAGACAAGCAAAGACTCTGTCAAAGCAACCAAACAAGGAGCCGCTGCCAATGCCAAGGGA GGCAAGTCGAGTACGACATCAAACGCTACAAAGGATACAGCCGCGGCTCCAGAGCGGAAGAGAGAGCGCGGAAAT GTCACAGCAGCCACCAAGATTCTTCAGCGTGATCTTGGACTATCGACATCTGGTGGGCGACGACGCGGGAAAGGT ACTTCGACTGATACTGCGTCACCTAAGAACGAGAGCTCTCGAGACTCGGCTATTCCATCAGCCGATCTGTCCAAG GAAACAACCAGGCCTCCTAAAACCGCATCATCCTCAACCAATGCTCCAAAGCCCAAGGACAGCGAGTCATCCTCG CGACCCGATGCGGCTCCACCGCCACCTGCAACCTTACCAGCCAAGTCCACTAAAGCTGGCAAATCCAAGCACCCA TCAACTGCTAAACAAGCATTCCTCAAGCACGCCAATCCATCCCAGGGTGTGACCGAGGCACTTCTGCAGTCTGCA TTCACCCCATTTGGAGCAGTGACGAAGGTCGAGATTGACAAGAAGAAGGGATTCGGATACATAGATTTTGCTGAA CCGGAAGCACTTCGCAAGGCCATCGCTGCTAGTCCCGTATCGGTGGCCCAGAGCCAAGTGGTGGTCTTGGAGCGG AAAGAGAACCCCGGAATCGAAAAGTCTCGGAAGGGACGTGAGGGGTTCACTGCCAACAAGACGAAGGCTCCCACG GAAGCTTCTGGGAGCACTTCAGGTGCTGGCGGTCATGTAACTGGAGGTAACGCTGGCTCCTCCCGCGGATCTCGT GGAGGGCGTGGATCACGGAATAAGGGACCCAAGAGTGGAGCTTCAGAGAAAACTGGAGGCACCGAGGCGGAGTGA |
| Gene | >Pro_DTO377G3_2|g3854.t1 ATGCAGCCTGGCAAGACCACCGCCGGTCTACTCCCAATTCCGGCAGCAGCTACGCAAAAGTCGGGCTCTGGAGCG CCCGCAAGGAAAACGCCTAAGCCTCCTGCTCCACGTCTCAAACTTCTCATTCGACGTTTGCCACCCGGGCTAACA CAGGCCGAGCTGGAGAGTGCTCTTGGGGACCAGTGGAAGGCTGGAGCAGGGAACGTTGACTGGCTTCAGTACAAA CCTGGCAAGGTGTCGAAAGAGTAAGATTCACCTTCCTCTGATGCAAAAGCGTATTTATTTCGACTGGCTGACGGG ACTTCTTCAAATAGCCCCAACAAACCGTCTCGCCCGTCAAGAGCATACATACACGTCGTGTCCACCGAATGTGTC TCTTTGCTCTCGGACGCTGTGCGCCAGGCTTCTTTCCAGGATGCCCGTAACACTCTACACGACCCCATTTTGCTG GGGCCTCCGTCGCTGGAGTTTGCACCTTATGCCAAGACCCCCGGAAGCCGCTCGCGCAAGGATGCTCGTCAAGGC ACGATTGATCAAGATTCAGACTTCATCGCTTTCTTAGAAAGCCTGACCCAGCCCATTACCAGGCCTGTGGCTGTG GATTCTACACCCGATGGCGAGGACAAGAAGAAGCAAGCCGTAATGACCACCCCGCTGGTACAGTTCATCAAAGAC AAGAAAGCCAGCAAGTTAAAGGACGGCAGTGGGTCCAAATCTAAACACAGTCGGTCGGACAAGGAATCAAAGCAG GAGAAGGTACAAGCAAAGAAACTTCTACAACGAGGCGATAAGGAACCCTCGGCAAACTCTTCCGACAAGAAACCC AAAGGAGAAAAGACAAGCAAAGACTCTGTCAAAGCAACCAAACAAGGAGCCGCTGCCAATGCCAAGGGAGGCAAG TCGAGTACGACATCAAACGCTACAAAGGATACAGCCGCGGCTCCAGAGCGGAAGAGAGAGCGCGGAAATGTCACA GCAGCCACCAAGATTCTTCAGCGTGATCTTGGACTATCGACATCTGGTGGGCGACGACGCGGGAAAGGTACTTCG ACTGATACTGCGTCACCTAAGAACGAGAGCTCTCGAGACTCGGCTATTCCATCAGCCGATCTGTCCAAGGAAACA ACCAGGCCTCCTAAAACCGCATCATCCTCAACCAATGCTCCAAAGCCCAAGGACAGCGAGTCATCCTCGCGACCC GATGCGGCTCCACCGCCACCTGCAACCTTACCAGCCAAGTCCACTAAAGCTGGCAAATCCAAGCACCCATCAACT GCTAAACAAGCATTCCTCAAGCACGCCAATCCATCCCAGGGTGTGACCGAGGCACTTCTGCAGTCTGCATTCACC CCATTTGGAGCAGTGACGAAGGTCGAGATTGACAAGAAGAAGGGATTCGGATACATAGATTTTGCTGAACCGGAA GCACTTCGCAAGGCCATCGCTGCTAGTCCCGTATCGGTGGCCCAGAGCCAAGTGGTGGTCTTGGAGCGGAAAGAG AACCCCGGAATCGAAAAGTCTCGGAAGGGACGTGAGGGGTTCACTGCCAACAAGACGAAGGCTCCCACGGAAGCT TCTGGGAGCACTTCAGGTGCTGGCGGTCATGTAACTGGAGGTAACGCTGGCTCCTCCCGCGGATCTCGTGGAGGG CGTGGATCACGGAATAAGGGACCCAAGAGTGGAGCTTCAGAGAAAACTGGAGGCACCGAGGCGGAGTGA |