Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g3854.t1
Gene name
Locationscaffold_07:82313..84032
Strand+
Gene length (bp)1719
Transcript length (bp)1650
Coding sequence length (bp)1650
Protein length (aa) 550

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF03467 Smg4_UPF3 Smg-4/UPF3 family 3.8E-43 37 205
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.1E-06 415 460

GO

GO Term Description Terminal node
GO:0003676 nucleic acid binding Yes
GO:0097159 organic cyclic compound binding No
GO:1901363 heterocyclic compound binding No
GO:0005488 binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 19 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g3854.t1
MQPGKTTAGLLPIPAAATQKSGSGAPARKTPKPPAPRLKLLIRRLPPGLTQAELESALGDQWKAGAGNVDWLQYK
PGKVSKDPNKPSRPSRAYIHVVSTECVSLLSDAVRQASFQDARNTLHDPILLGPPSLEFAPYAKTPGSRSRKDAR
QGTIDQDSDFIAFLESLTQPITRPVAVDSTPDGEDKKKQAVMTTPLVQFIKDKKASKLKDGSGSKSKHSRSDKES
KQEKVQAKKLLQRGDKEPSANSSDKKPKGEKTSKDSVKATKQGAAANAKGGKSSTTSNATKDTAAAPERKRERGN
VTAATKILQRDLGLSTSGGRRRGKGTSTDTASPKNESSRDSAIPSADLSKETTRPPKTASSSTNAPKPKDSESSS
RPDAAPPPPATLPAKSTKAGKSKHPSTAKQAFLKHANPSQGVTEALLQSAFTPFGAVTKVEIDKKKGFGYIDFAE
PEALRKAIAASPVSVAQSQVVVLERKENPGIEKSRKGREGFTANKTKAPTEASGSTSGAGGHVTGGNAGSSRGSR
GGRGSRNKGPKSGASEKTGGTEAE*
Coding >Pro_DTO377G3_2|g3854.t1
ATGCAGCCTGGCAAGACCACCGCCGGTCTACTCCCAATTCCGGCAGCAGCTACGCAAAAGTCGGGCTCTGGAGCG
CCCGCAAGGAAAACGCCTAAGCCTCCTGCTCCACGTCTCAAACTTCTCATTCGACGTTTGCCACCCGGGCTAACA
CAGGCCGAGCTGGAGAGTGCTCTTGGGGACCAGTGGAAGGCTGGAGCAGGGAACGTTGACTGGCTTCAGTACAAA
CCTGGCAAGGTGTCGAAAGACCCCAACAAACCGTCTCGCCCGTCAAGAGCATACATACACGTCGTGTCCACCGAA
TGTGTCTCTTTGCTCTCGGACGCTGTGCGCCAGGCTTCTTTCCAGGATGCCCGTAACACTCTACACGACCCCATT
TTGCTGGGGCCTCCGTCGCTGGAGTTTGCACCTTATGCCAAGACCCCCGGAAGCCGCTCGCGCAAGGATGCTCGT
CAAGGCACGATTGATCAAGATTCAGACTTCATCGCTTTCTTAGAAAGCCTGACCCAGCCCATTACCAGGCCTGTG
GCTGTGGATTCTACACCCGATGGCGAGGACAAGAAGAAGCAAGCCGTAATGACCACCCCGCTGGTACAGTTCATC
AAAGACAAGAAAGCCAGCAAGTTAAAGGACGGCAGTGGGTCCAAATCTAAACACAGTCGGTCGGACAAGGAATCA
AAGCAGGAGAAGGTACAAGCAAAGAAACTTCTACAACGAGGCGATAAGGAACCCTCGGCAAACTCTTCCGACAAG
AAACCCAAAGGAGAAAAGACAAGCAAAGACTCTGTCAAAGCAACCAAACAAGGAGCCGCTGCCAATGCCAAGGGA
GGCAAGTCGAGTACGACATCAAACGCTACAAAGGATACAGCCGCGGCTCCAGAGCGGAAGAGAGAGCGCGGAAAT
GTCACAGCAGCCACCAAGATTCTTCAGCGTGATCTTGGACTATCGACATCTGGTGGGCGACGACGCGGGAAAGGT
ACTTCGACTGATACTGCGTCACCTAAGAACGAGAGCTCTCGAGACTCGGCTATTCCATCAGCCGATCTGTCCAAG
GAAACAACCAGGCCTCCTAAAACCGCATCATCCTCAACCAATGCTCCAAAGCCCAAGGACAGCGAGTCATCCTCG
CGACCCGATGCGGCTCCACCGCCACCTGCAACCTTACCAGCCAAGTCCACTAAAGCTGGCAAATCCAAGCACCCA
TCAACTGCTAAACAAGCATTCCTCAAGCACGCCAATCCATCCCAGGGTGTGACCGAGGCACTTCTGCAGTCTGCA
TTCACCCCATTTGGAGCAGTGACGAAGGTCGAGATTGACAAGAAGAAGGGATTCGGATACATAGATTTTGCTGAA
CCGGAAGCACTTCGCAAGGCCATCGCTGCTAGTCCCGTATCGGTGGCCCAGAGCCAAGTGGTGGTCTTGGAGCGG
AAAGAGAACCCCGGAATCGAAAAGTCTCGGAAGGGACGTGAGGGGTTCACTGCCAACAAGACGAAGGCTCCCACG
GAAGCTTCTGGGAGCACTTCAGGTGCTGGCGGTCATGTAACTGGAGGTAACGCTGGCTCCTCCCGCGGATCTCGT
GGAGGGCGTGGATCACGGAATAAGGGACCCAAGAGTGGAGCTTCAGAGAAAACTGGAGGCACCGAGGCGGAGTGA
Transcript >Pro_DTO377G3_2|g3854.t1
ATGCAGCCTGGCAAGACCACCGCCGGTCTACTCCCAATTCCGGCAGCAGCTACGCAAAAGTCGGGCTCTGGAGCG
CCCGCAAGGAAAACGCCTAAGCCTCCTGCTCCACGTCTCAAACTTCTCATTCGACGTTTGCCACCCGGGCTAACA
CAGGCCGAGCTGGAGAGTGCTCTTGGGGACCAGTGGAAGGCTGGAGCAGGGAACGTTGACTGGCTTCAGTACAAA
CCTGGCAAGGTGTCGAAAGACCCCAACAAACCGTCTCGCCCGTCAAGAGCATACATACACGTCGTGTCCACCGAA
TGTGTCTCTTTGCTCTCGGACGCTGTGCGCCAGGCTTCTTTCCAGGATGCCCGTAACACTCTACACGACCCCATT
TTGCTGGGGCCTCCGTCGCTGGAGTTTGCACCTTATGCCAAGACCCCCGGAAGCCGCTCGCGCAAGGATGCTCGT
CAAGGCACGATTGATCAAGATTCAGACTTCATCGCTTTCTTAGAAAGCCTGACCCAGCCCATTACCAGGCCTGTG
GCTGTGGATTCTACACCCGATGGCGAGGACAAGAAGAAGCAAGCCGTAATGACCACCCCGCTGGTACAGTTCATC
AAAGACAAGAAAGCCAGCAAGTTAAAGGACGGCAGTGGGTCCAAATCTAAACACAGTCGGTCGGACAAGGAATCA
AAGCAGGAGAAGGTACAAGCAAAGAAACTTCTACAACGAGGCGATAAGGAACCCTCGGCAAACTCTTCCGACAAG
AAACCCAAAGGAGAAAAGACAAGCAAAGACTCTGTCAAAGCAACCAAACAAGGAGCCGCTGCCAATGCCAAGGGA
GGCAAGTCGAGTACGACATCAAACGCTACAAAGGATACAGCCGCGGCTCCAGAGCGGAAGAGAGAGCGCGGAAAT
GTCACAGCAGCCACCAAGATTCTTCAGCGTGATCTTGGACTATCGACATCTGGTGGGCGACGACGCGGGAAAGGT
ACTTCGACTGATACTGCGTCACCTAAGAACGAGAGCTCTCGAGACTCGGCTATTCCATCAGCCGATCTGTCCAAG
GAAACAACCAGGCCTCCTAAAACCGCATCATCCTCAACCAATGCTCCAAAGCCCAAGGACAGCGAGTCATCCTCG
CGACCCGATGCGGCTCCACCGCCACCTGCAACCTTACCAGCCAAGTCCACTAAAGCTGGCAAATCCAAGCACCCA
TCAACTGCTAAACAAGCATTCCTCAAGCACGCCAATCCATCCCAGGGTGTGACCGAGGCACTTCTGCAGTCTGCA
TTCACCCCATTTGGAGCAGTGACGAAGGTCGAGATTGACAAGAAGAAGGGATTCGGATACATAGATTTTGCTGAA
CCGGAAGCACTTCGCAAGGCCATCGCTGCTAGTCCCGTATCGGTGGCCCAGAGCCAAGTGGTGGTCTTGGAGCGG
AAAGAGAACCCCGGAATCGAAAAGTCTCGGAAGGGACGTGAGGGGTTCACTGCCAACAAGACGAAGGCTCCCACG
GAAGCTTCTGGGAGCACTTCAGGTGCTGGCGGTCATGTAACTGGAGGTAACGCTGGCTCCTCCCGCGGATCTCGT
GGAGGGCGTGGATCACGGAATAAGGGACCCAAGAGTGGAGCTTCAGAGAAAACTGGAGGCACCGAGGCGGAGTGA
Gene >Pro_DTO377G3_2|g3854.t1
ATGCAGCCTGGCAAGACCACCGCCGGTCTACTCCCAATTCCGGCAGCAGCTACGCAAAAGTCGGGCTCTGGAGCG
CCCGCAAGGAAAACGCCTAAGCCTCCTGCTCCACGTCTCAAACTTCTCATTCGACGTTTGCCACCCGGGCTAACA
CAGGCCGAGCTGGAGAGTGCTCTTGGGGACCAGTGGAAGGCTGGAGCAGGGAACGTTGACTGGCTTCAGTACAAA
CCTGGCAAGGTGTCGAAAGAGTAAGATTCACCTTCCTCTGATGCAAAAGCGTATTTATTTCGACTGGCTGACGGG
ACTTCTTCAAATAGCCCCAACAAACCGTCTCGCCCGTCAAGAGCATACATACACGTCGTGTCCACCGAATGTGTC
TCTTTGCTCTCGGACGCTGTGCGCCAGGCTTCTTTCCAGGATGCCCGTAACACTCTACACGACCCCATTTTGCTG
GGGCCTCCGTCGCTGGAGTTTGCACCTTATGCCAAGACCCCCGGAAGCCGCTCGCGCAAGGATGCTCGTCAAGGC
ACGATTGATCAAGATTCAGACTTCATCGCTTTCTTAGAAAGCCTGACCCAGCCCATTACCAGGCCTGTGGCTGTG
GATTCTACACCCGATGGCGAGGACAAGAAGAAGCAAGCCGTAATGACCACCCCGCTGGTACAGTTCATCAAAGAC
AAGAAAGCCAGCAAGTTAAAGGACGGCAGTGGGTCCAAATCTAAACACAGTCGGTCGGACAAGGAATCAAAGCAG
GAGAAGGTACAAGCAAAGAAACTTCTACAACGAGGCGATAAGGAACCCTCGGCAAACTCTTCCGACAAGAAACCC
AAAGGAGAAAAGACAAGCAAAGACTCTGTCAAAGCAACCAAACAAGGAGCCGCTGCCAATGCCAAGGGAGGCAAG
TCGAGTACGACATCAAACGCTACAAAGGATACAGCCGCGGCTCCAGAGCGGAAGAGAGAGCGCGGAAATGTCACA
GCAGCCACCAAGATTCTTCAGCGTGATCTTGGACTATCGACATCTGGTGGGCGACGACGCGGGAAAGGTACTTCG
ACTGATACTGCGTCACCTAAGAACGAGAGCTCTCGAGACTCGGCTATTCCATCAGCCGATCTGTCCAAGGAAACA
ACCAGGCCTCCTAAAACCGCATCATCCTCAACCAATGCTCCAAAGCCCAAGGACAGCGAGTCATCCTCGCGACCC
GATGCGGCTCCACCGCCACCTGCAACCTTACCAGCCAAGTCCACTAAAGCTGGCAAATCCAAGCACCCATCAACT
GCTAAACAAGCATTCCTCAAGCACGCCAATCCATCCCAGGGTGTGACCGAGGCACTTCTGCAGTCTGCATTCACC
CCATTTGGAGCAGTGACGAAGGTCGAGATTGACAAGAAGAAGGGATTCGGATACATAGATTTTGCTGAACCGGAA
GCACTTCGCAAGGCCATCGCTGCTAGTCCCGTATCGGTGGCCCAGAGCCAAGTGGTGGTCTTGGAGCGGAAAGAG
AACCCCGGAATCGAAAAGTCTCGGAAGGGACGTGAGGGGTTCACTGCCAACAAGACGAAGGCTCCCACGGAAGCT
TCTGGGAGCACTTCAGGTGCTGGCGGTCATGTAACTGGAGGTAACGCTGGCTCCTCCCGCGGATCTCGTGGAGGG
CGTGGATCACGGAATAAGGGACCCAAGAGTGGAGCTTCAGAGAAAACTGGAGGCACCGAGGCGGAGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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