© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3843.t1 |
| Gene name | |
| Location | scaffold_07:62217..63810 |
| Strand | + |
| Gene length (bp) | 1593 |
| Transcript length (bp) | 1593 |
| Coding sequence length (bp) | 1593 |
| Protein length (aa) | 531 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00840 | Glyco_hydro_7 | Glycosyl hydrolase family 7 | 1.9E-209 | 27 | 461 |
| PF00734 | CBM_1 | Fungal cellulose binding domain | 4.3E-12 | 498 | 526 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0030248 | cellulose binding | Yes |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | Yes |
| GO:0005576 | extracellular region | Yes |
| GO:0005975 | carbohydrate metabolic process | Yes |
| GO:0071704 | organic substance metabolic process | No |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds | No |
| GO:0016787 | hydrolase activity | No |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| GO:0030246 | carbohydrate binding | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| GO:0030247 | polysaccharide binding | No |
| GO:0008152 | metabolic process | No |
| GO:0005488 | binding | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008150 | biological_process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 25 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 4.85 | 1.56 | 8.15 |
| 5d_25C | Five days - 25 degrees Celsius | 5.58 | 1.85 | 9.32 |
| 7d_25C | Seven days - 25 degrees Celsius | 4.62 | 1.30 | 7.95 |
| 10d_25C | Ten days - 25 degrees Celsius | 3.52 | 0.78 | 6.27 |
| 7d_15C | Seven days - 15 degrees Celsius | 6.08 | 1.48 | 10.69 |
| 7d_30C | Seven days - 30 degrees Celsius | 15.25 | 6.96 | 23.54 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.788309 | no |
| 3d_25C | 7d_25C | 0.936196 | no |
| 3d_25C | 7d_15C | 0.661765 | no |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.497940 | no |
| 5d_25C | 7d_25C | 0.709184 | no |
| 5d_25C | 7d_15C | 0.887361 | no |
| 5d_25C | 7d_30C | 0.001804 | yes |
| 5d_25C | 10d_25C | 0.284490 | no |
| 7d_25C | 7d_15C | 0.589136 | no |
| 7d_25C | 7d_30C | 0.000700 | yes |
| 7d_25C | 10d_25C | 0.586011 | no |
| 7d_15C | 7d_30C | 0.014377 | yes |
| 7d_15C | 10d_25C | 0.218925 | no |
| 7d_30C | 10d_25C | 0.000700 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3843.t1 MASTLSNFYKDALLLVALLRTAQAQQVGTNTAEVHPSLTWQKCTTGGSCTSQSGKVVVDANWRWVHNTAGFTNCY TGNEWDTTICPDDITCATNCALEGADYSGTYGVTTSGSSLRLNFVTQASQKNIGSRLYLMADDSKYEMFQLLNQE FTFNVDVSNLPCGLNGALYFVSMDADGGMARYPANKAGAKYGTGYCDSQCPRDLKFINGQANVEGWEPSSNDVNA GTGNYGSCCAEMDIWEANSISTAVTPHPCDDPTQTRCSGDACGGTYSNDRYSGTCDPDGCDFNPYRMGNQSFYGP SKIVDTKSPFTVVTQFITNDGTSTGTLSEIKRFYVQNGKVIPQSVSTISAVTGNSISDSFCSAQKAAFGDRDVFT QHGGMVGMGAGLADGMVLVMSLWDDHAANMLWLDSTYPTASSSTTPGAARGSCDIYSGQPIDVEANNAGAYVIYS NIKVGPLGSTFSSTNSSGTTTTVTTSSTTTKATSTTTTTTSSTTGAPQYAQCGGINWTGATTCASPYTCQKQSDY YSQCL* |
| Coding | >Pro_DTO377G3_2|g3843.t1 ATGGCTTCCACTCTCTCCAATTTTTACAAAGATGCCCTGCTGTTGGTCGCCTTGCTCAGAACTGCACAGGCACAA CAGGTGGGCACAAACACCGCTGAGGTTCACCCATCCTTGACTTGGCAAAAATGCACCACTGGAGGCAGCTGCACT TCCCAAAGTGGCAAGGTTGTCGTCGACGCCAACTGGCGCTGGGTTCACAACACTGCCGGCTTCACCAATTGCTAT ACTGGCAACGAGTGGGATACAACTATCTGCCCGGACGATATTACTTGTGCCACTAACTGCGCCCTAGAAGGTGCC GACTACTCGGGCACTTATGGCGTTACCACCAGTGGCAGCTCTTTGCGGCTGAACTTCGTCACCCAGGCATCTCAG AAGAACATTGGCTCACGTCTCTACCTGATGGCAGATGATAGCAAGTATGAAATGTTCCAACTGCTCAATCAAGAG TTCACCTTCAATGTCGATGTCTCGAATCTTCCCTGCGGCTTGAACGGTGCTCTCTACTTCGTATCCATGGACGCA GATGGTGGCATGGCACGATACCCTGCCAACAAAGCCGGTGCTAAGTACGGCACTGGTTACTGTGATTCCCAATGC CCGCGCGACCTTAAGTTCATCAACGGCCAGGCCAACGTGGAAGGGTGGGAGCCTTCTTCCAACGACGTCAACGCA GGTACTGGCAACTATGGTTCTTGCTGTGCTGAGATGGATATTTGGGAGGCCAACTCGATCTCCACTGCAGTCACA CCTCATCCCTGCGATGACCCAACCCAGACTAGGTGCAGTGGAGATGCTTGTGGTGGTACATACAGCAATGACCGC TATAGTGGTACTTGTGACCCTGATGGATGTGATTTCAACCCATATCGCATGGGCAACCAGTCTTTCTATGGCCCG AGCAAGATCGTTGATACCAAGTCCCCTTTCACAGTGGTGACTCAGTTTATCACCAACGACGGTACATCCACTGGC ACGCTCTCTGAAATCAAGCGCTTCTATGTACAGAATGGCAAGGTTATCCCCCAGTCTGTATCTACCATCAGCGCT GTTACTGGCAACTCTATCTCCGACTCGTTCTGCTCTGCTCAGAAAGCCGCTTTCGGGGACAGGGACGTATTTACT CAACATGGTGGCATGGTGGGCATGGGGGCTGGCCTTGCTGATGGCATGGTTCTGGTGATGAGTCTCTGGGATGAC CACGCGGCCAACATGCTGTGGCTCGACAGCACTTACCCAACCGCCTCTTCTTCGACTACTCCAGGTGCTGCTCGT GGTAGCTGTGACATTTATTCTGGCCAGCCTATCGATGTTGAAGCTAACAATGCGGGTGCCTACGTTATCTATTCA AACATCAAGGTCGGTCCTCTCGGTTCGACTTTCAGCTCGACCAACTCAAGTGGGACAACCACCACAGTCACCACC AGCAGCACCACCACCAAGGCAACCAGCACCACCACCACTACTACATCAAGCACCACCGGCGCTCCTCAATATGCG CAGTGCGGTGGAATTAACTGGACCGGTGCAACCACCTGTGCCAGCCCGTACACCTGCCAGAAGCAGAGTGATTAC TACTCGCAATGCCTGTAG |
| Transcript | >Pro_DTO377G3_2|g3843.t1 ATGGCTTCCACTCTCTCCAATTTTTACAAAGATGCCCTGCTGTTGGTCGCCTTGCTCAGAACTGCACAGGCACAA CAGGTGGGCACAAACACCGCTGAGGTTCACCCATCCTTGACTTGGCAAAAATGCACCACTGGAGGCAGCTGCACT TCCCAAAGTGGCAAGGTTGTCGTCGACGCCAACTGGCGCTGGGTTCACAACACTGCCGGCTTCACCAATTGCTAT ACTGGCAACGAGTGGGATACAACTATCTGCCCGGACGATATTACTTGTGCCACTAACTGCGCCCTAGAAGGTGCC GACTACTCGGGCACTTATGGCGTTACCACCAGTGGCAGCTCTTTGCGGCTGAACTTCGTCACCCAGGCATCTCAG AAGAACATTGGCTCACGTCTCTACCTGATGGCAGATGATAGCAAGTATGAAATGTTCCAACTGCTCAATCAAGAG TTCACCTTCAATGTCGATGTCTCGAATCTTCCCTGCGGCTTGAACGGTGCTCTCTACTTCGTATCCATGGACGCA GATGGTGGCATGGCACGATACCCTGCCAACAAAGCCGGTGCTAAGTACGGCACTGGTTACTGTGATTCCCAATGC CCGCGCGACCTTAAGTTCATCAACGGCCAGGCCAACGTGGAAGGGTGGGAGCCTTCTTCCAACGACGTCAACGCA GGTACTGGCAACTATGGTTCTTGCTGTGCTGAGATGGATATTTGGGAGGCCAACTCGATCTCCACTGCAGTCACA CCTCATCCCTGCGATGACCCAACCCAGACTAGGTGCAGTGGAGATGCTTGTGGTGGTACATACAGCAATGACCGC TATAGTGGTACTTGTGACCCTGATGGATGTGATTTCAACCCATATCGCATGGGCAACCAGTCTTTCTATGGCCCG AGCAAGATCGTTGATACCAAGTCCCCTTTCACAGTGGTGACTCAGTTTATCACCAACGACGGTACATCCACTGGC ACGCTCTCTGAAATCAAGCGCTTCTATGTACAGAATGGCAAGGTTATCCCCCAGTCTGTATCTACCATCAGCGCT GTTACTGGCAACTCTATCTCCGACTCGTTCTGCTCTGCTCAGAAAGCCGCTTTCGGGGACAGGGACGTATTTACT CAACATGGTGGCATGGTGGGCATGGGGGCTGGCCTTGCTGATGGCATGGTTCTGGTGATGAGTCTCTGGGATGAC CACGCGGCCAACATGCTGTGGCTCGACAGCACTTACCCAACCGCCTCTTCTTCGACTACTCCAGGTGCTGCTCGT GGTAGCTGTGACATTTATTCTGGCCAGCCTATCGATGTTGAAGCTAACAATGCGGGTGCCTACGTTATCTATTCA AACATCAAGGTCGGTCCTCTCGGTTCGACTTTCAGCTCGACCAACTCAAGTGGGACAACCACCACAGTCACCACC AGCAGCACCACCACCAAGGCAACCAGCACCACCACCACTACTACATCAAGCACCACCGGCGCTCCTCAATATGCG CAGTGCGGTGGAATTAACTGGACCGGTGCAACCACCTGTGCCAGCCCGTACACCTGCCAGAAGCAGAGTGATTAC TACTCGCAATGCCTGTAG |
| Gene | >Pro_DTO377G3_2|g3843.t1 ATGGCTTCCACTCTCTCCAATTTTTACAAAGATGCCCTGCTGTTGGTCGCCTTGCTCAGAACTGCACAGGCACAA CAGGTGGGCACAAACACCGCTGAGGTTCACCCATCCTTGACTTGGCAAAAATGCACCACTGGAGGCAGCTGCACT TCCCAAAGTGGCAAGGTTGTCGTCGACGCCAACTGGCGCTGGGTTCACAACACTGCCGGCTTCACCAATTGCTAT ACTGGCAACGAGTGGGATACAACTATCTGCCCGGACGATATTACTTGTGCCACTAACTGCGCCCTAGAAGGTGCC GACTACTCGGGCACTTATGGCGTTACCACCAGTGGCAGCTCTTTGCGGCTGAACTTCGTCACCCAGGCATCTCAG AAGAACATTGGCTCACGTCTCTACCTGATGGCAGATGATAGCAAGTATGAAATGTTCCAACTGCTCAATCAAGAG TTCACCTTCAATGTCGATGTCTCGAATCTTCCCTGCGGCTTGAACGGTGCTCTCTACTTCGTATCCATGGACGCA GATGGTGGCATGGCACGATACCCTGCCAACAAAGCCGGTGCTAAGTACGGCACTGGTTACTGTGATTCCCAATGC CCGCGCGACCTTAAGTTCATCAACGGCCAGGCCAACGTGGAAGGGTGGGAGCCTTCTTCCAACGACGTCAACGCA GGTACTGGCAACTATGGTTCTTGCTGTGCTGAGATGGATATTTGGGAGGCCAACTCGATCTCCACTGCAGTCACA CCTCATCCCTGCGATGACCCAACCCAGACTAGGTGCAGTGGAGATGCTTGTGGTGGTACATACAGCAATGACCGC TATAGTGGTACTTGTGACCCTGATGGATGTGATTTCAACCCATATCGCATGGGCAACCAGTCTTTCTATGGCCCG AGCAAGATCGTTGATACCAAGTCCCCTTTCACAGTGGTGACTCAGTTTATCACCAACGACGGTACATCCACTGGC ACGCTCTCTGAAATCAAGCGCTTCTATGTACAGAATGGCAAGGTTATCCCCCAGTCTGTATCTACCATCAGCGCT GTTACTGGCAACTCTATCTCCGACTCGTTCTGCTCTGCTCAGAAAGCCGCTTTCGGGGACAGGGACGTATTTACT CAACATGGTGGCATGGTGGGCATGGGGGCTGGCCTTGCTGATGGCATGGTTCTGGTGATGAGTCTCTGGGATGAC CACGCGGCCAACATGCTGTGGCTCGACAGCACTTACCCAACCGCCTCTTCTTCGACTACTCCAGGTGCTGCTCGT GGTAGCTGTGACATTTATTCTGGCCAGCCTATCGATGTTGAAGCTAACAATGCGGGTGCCTACGTTATCTATTCA AACATCAAGGTCGGTCCTCTCGGTTCGACTTTCAGCTCGACCAACTCAAGTGGGACAACCACCACAGTCACCACC AGCAGCACCACCACCAAGGCAACCAGCACCACCACCACTACTACATCAAGCACCACCGGCGCTCCTCAATATGCG CAGTGCGGTGGAATTAACTGGACCGGTGCAACCACCTGTGCCAGCCCGTACACCTGCCAGAAGCAGAGTGATTAC TACTCGCAATGCCTGTAG |