© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3786.t1 |
| Gene name | |
| Location | scaffold_06:762075..763062 |
| Strand | - |
| Gene length (bp) | 987 |
| Transcript length (bp) | 987 |
| Coding sequence length (bp) | 987 |
| Protein length (aa) | 329 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13373 | Dsc3_C | DSC E3 ubiquitin ligase complex subunit 3, C-terminal domain | 8.7E-44 | 192 | 325 |
| PF10302 | Dsc3_N | DSC E3 ubiquitin ligase complex subunit 3, ubiquitin-like domain | 1.8E-35 | 20 | 129 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 13 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 279 | 296 | 17 |
| 2 | 308 | 327 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 35.32 | 18.08 | 52.56 |
| 5d_25C | Five days - 25 degrees Celsius | 39.45 | 20.78 | 58.12 |
| 7d_25C | Seven days - 25 degrees Celsius | 34.16 | 17.39 | 50.93 |
| 10d_25C | Ten days - 25 degrees Celsius | 45.87 | 24.98 | 66.76 |
| 7d_15C | Seven days - 15 degrees Celsius | 30.86 | 15.31 | 46.42 |
| 7d_30C | Seven days - 30 degrees Celsius | 68.63 | 39.88 | 97.39 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.761657 | no |
| 3d_25C | 7d_25C | 0.940172 | no |
| 3d_25C | 7d_15C | 0.709620 | no |
| 3d_25C | 7d_30C | 0.004840 | yes |
| 3d_25C | 10d_25C | 0.375003 | no |
| 5d_25C | 7d_25C | 0.668150 | no |
| 5d_25C | 7d_15C | 0.420801 | no |
| 5d_25C | 7d_30C | 0.024170 | yes |
| 5d_25C | 10d_25C | 0.633811 | no |
| 7d_25C | 7d_15C | 0.791119 | no |
| 7d_25C | 7d_30C | 0.003197 | yes |
| 7d_25C | 10d_25C | 0.298433 | no |
| 7d_15C | 7d_30C | 0.001278 | yes |
| 7d_15C | 10d_25C | 0.143169 | no |
| 7d_30C | 10d_25C | 0.095723 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3786.t1 MTSPFLSPYAVGEPDTEPLLITVRFSASIPDLQLDVPEPETTTGAGLKQLIRAQLAKPLSSHRLRLIYAGRGLED TAALTASLKLPSSPSRSPRPVADQPETPEENGKGKQAVRDTRPRIYIHCSIGDIVLSDADLASEASVSSTILLQQ KQQKTNTGKKLFGKDVSTSRHSQTQTQTQTQSQSTTTTPAPRGFDRLLSAGFTAAEVTALRSQFLAMQSVSRTPD TMPTGDQLRDLEDRWMDEGSTAAQVQGGFGEGGGIGDDEGGIGSGSRGAMDDMLWGAVMGFFWPVGCAMWLRREE GVWSWRKGVAVCVGVIVNAVFGAMRIMN* |
| Coding | >Pro_DTO377G3_2|g3786.t1 ATGACCTCACCCTTCCTCTCTCCATACGCAGTCGGCGAACCAGACACCGAGCCGCTCCTCATCACCGTCCGCTTC TCCGCCTCAATCCCCGACCTCCAACTAGACGTCCCAGAGCCCGAGACCACAACAGGCGCAGGTCTAAAGCAACTA ATCCGAGCGCAACTCGCCAAACCCCTGTCATCCCACCGACTACGCCTCATCTACGCCGGCCGCGGTCTCGAAGAC ACAGCCGCATTAACAGCCTCACTAAAGCTCCCTTCGTCACCAAGCCGGAGCCCTCGCCCCGTAGCAGACCAACCC GAGACACCAGAAGAAAATGGCAAAGGAAAGCAGGCGGTGCGCGATACCCGCCCACGAATTTACATCCACTGCTCG ATCGGCGACATCGTACTCTCAGACGCAGACTTAGCTAGCGAAGCAAGCGTGTCATCAACGATCCTTCTGCAACAG AAGCAACAGAAAACTAACACAGGAAAGAAACTTTTCGGCAAGGATGTCTCGACATCTCGTCACTCCCAGACCCAG ACCCAGACCCAGACCCAGTCCCAGTCAACTACCACCACACCCGCACCCCGCGGTTTCGACCGCCTCCTCTCGGCC GGCTTCACGGCGGCTGAGGTCACCGCTCTGCGCTCCCAGTTCCTGGCCATGCAGTCTGTTTCCCGGACGCCGGAT ACTATGCCTACTGGCGACCAGCTGCGGGATCTTGAGGACCGCTGGATGGATGAGGGGTCGACGGCGGCGCAGGTG CAGGGTGGGTTTGGGGAGGGGGGTGGTATCGGGGATGACGAGGGCGGGATTGGATCTGGATCGCGTGGGGCGATG GATGATATGCTTTGGGGCGCTGTTATGGGGTTCTTTTGGCCTGTTGGTTGTGCGATGTGGTTGCGCAGAGAGGAA GGGGTGTGGAGTTGGAGGAAGGGGGTGGCTGTTTGTGTGGGTGTTATTGTTAATGCTGTTTTTGGGGCGATGAGG ATTATGAACTGA |
| Transcript | >Pro_DTO377G3_2|g3786.t1 ATGACCTCACCCTTCCTCTCTCCATACGCAGTCGGCGAACCAGACACCGAGCCGCTCCTCATCACCGTCCGCTTC TCCGCCTCAATCCCCGACCTCCAACTAGACGTCCCAGAGCCCGAGACCACAACAGGCGCAGGTCTAAAGCAACTA ATCCGAGCGCAACTCGCCAAACCCCTGTCATCCCACCGACTACGCCTCATCTACGCCGGCCGCGGTCTCGAAGAC ACAGCCGCATTAACAGCCTCACTAAAGCTCCCTTCGTCACCAAGCCGGAGCCCTCGCCCCGTAGCAGACCAACCC GAGACACCAGAAGAAAATGGCAAAGGAAAGCAGGCGGTGCGCGATACCCGCCCACGAATTTACATCCACTGCTCG ATCGGCGACATCGTACTCTCAGACGCAGACTTAGCTAGCGAAGCAAGCGTGTCATCAACGATCCTTCTGCAACAG AAGCAACAGAAAACTAACACAGGAAAGAAACTTTTCGGCAAGGATGTCTCGACATCTCGTCACTCCCAGACCCAG ACCCAGACCCAGACCCAGTCCCAGTCAACTACCACCACACCCGCACCCCGCGGTTTCGACCGCCTCCTCTCGGCC GGCTTCACGGCGGCTGAGGTCACCGCTCTGCGCTCCCAGTTCCTGGCCATGCAGTCTGTTTCCCGGACGCCGGAT ACTATGCCTACTGGCGACCAGCTGCGGGATCTTGAGGACCGCTGGATGGATGAGGGGTCGACGGCGGCGCAGGTG CAGGGTGGGTTTGGGGAGGGGGGTGGTATCGGGGATGACGAGGGCGGGATTGGATCTGGATCGCGTGGGGCGATG GATGATATGCTTTGGGGCGCTGTTATGGGGTTCTTTTGGCCTGTTGGTTGTGCGATGTGGTTGCGCAGAGAGGAA GGGGTGTGGAGTTGGAGGAAGGGGGTGGCTGTTTGTGTGGGTGTTATTGTTAATGCTGTTTTTGGGGCGATGAGG ATTATGAACTGA |
| Gene | >Pro_DTO377G3_2|g3786.t1 ATGACCTCACCCTTCCTCTCTCCATACGCAGTCGGCGAACCAGACACCGAGCCGCTCCTCATCACCGTCCGCTTC TCCGCCTCAATCCCCGACCTCCAACTAGACGTCCCAGAGCCCGAGACCACAACAGGCGCAGGTCTAAAGCAACTA ATCCGAGCGCAACTCGCCAAACCCCTGTCATCCCACCGACTACGCCTCATCTACGCCGGCCGCGGTCTCGAAGAC ACAGCCGCATTAACAGCCTCACTAAAGCTCCCTTCGTCACCAAGCCGGAGCCCTCGCCCCGTAGCAGACCAACCC GAGACACCAGAAGAAAATGGCAAAGGAAAGCAGGCGGTGCGCGATACCCGCCCACGAATTTACATCCACTGCTCG ATCGGCGACATCGTACTCTCAGACGCAGACTTAGCTAGCGAAGCAAGCGTGTCATCAACGATCCTTCTGCAACAG AAGCAACAGAAAACTAACACAGGAAAGAAACTTTTCGGCAAGGATGTCTCGACATCTCGTCACTCCCAGACCCAG ACCCAGACCCAGACCCAGTCCCAGTCAACTACCACCACACCCGCACCCCGCGGTTTCGACCGCCTCCTCTCGGCC GGCTTCACGGCGGCTGAGGTCACCGCTCTGCGCTCCCAGTTCCTGGCCATGCAGTCTGTTTCCCGGACGCCGGAT ACTATGCCTACTGGCGACCAGCTGCGGGATCTTGAGGACCGCTGGATGGATGAGGGGTCGACGGCGGCGCAGGTG CAGGGTGGGTTTGGGGAGGGGGGTGGTATCGGGGATGACGAGGGCGGGATTGGATCTGGATCGCGTGGGGCGATG GATGATATGCTTTGGGGCGCTGTTATGGGGTTCTTTTGGCCTGTTGGTTGTGCGATGTGGTTGCGCAGAGAGGAA GGGGTGTGGAGTTGGAGGAAGGGGGTGGCTGTTTGTGTGGGTGTTATTGTTAATGCTGTTTTTGGGGCGATGAGG ATTATGAACTGA |