© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3785.t1 |
| Gene name | |
| Location | scaffold_06:760899..761743 |
| Strand | + |
| Gene length (bp) | 844 |
| Transcript length (bp) | 672 |
| Coding sequence length (bp) | 672 |
| Protein length (aa) | 224 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05008 | V-SNARE | Vesicle transport v-SNARE protein N-terminus | 3.7E-20 | 21 | 97 |
| PF12352 | V-SNARE_C | Snare region anchored in the vesicle membrane C-terminus | 1.9E-15 | 131 | 196 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0006886 | intracellular protein transport | Yes |
| GO:0046907 | intracellular transport | No |
| GO:0045184 | establishment of protein localization | No |
| GO:0006810 | transport | No |
| GO:0008150 | biological_process | No |
| GO:0015031 | protein transport | No |
| GO:0005575 | cellular_component | No |
| GO:0051234 | establishment of localization | No |
| GO:0051641 | cellular localization | No |
| GO:0071702 | organic substance transport | No |
| GO:0070727 | cellular macromolecule localization | No |
| GO:0051649 | establishment of localization in cell | No |
| GO:0051179 | localization | No |
| GO:0071705 | nitrogen compound transport | No |
| GO:0008104 | protein localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0033036 | macromolecule localization | No |
| GO:0009987 | cellular process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 54 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 197 | 219 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3785.t1 MSNLNTDAGSEMFASYENELKLVQADLNQKLDQIAEASGEQRKSAIGNATQVLEEATELLDQMRMEKQNIPSAAR SKVNIRFRNYSTDIDEVKRKLKSLSDDRQALFGDRYTDEPQDEHLEQRQQLLSGTDRLERSSARLQQSQRMALET EDVARGTLGTLYEQREQITNARNNLQQSEGYVDTSIKTLRGMARRMATNRMITIAIITVLVLLIFAVIFSKFH* |
| Coding | >Pro_DTO377G3_2|g3785.t1 ATGTCAAACCTGAACACAGATGCCGGCTCGGAGATGTTCGCCAGCTACGAGAACGAGTTGAAGCTGGTGCAAGCC GATCTGAACCAGAAGCTGGACCAGATCGCCGAGGCAAGCGGCGAGCAACGGAAATCAGCAATCGGCAACGCAACG CAAGTCCTCGAAGAAGCAACAGAACTGCTCGACCAAATGCGCATGGAGAAGCAGAACATCCCCTCCGCAGCCCGG TCAAAAGTCAACATCCGCTTCCGCAACTACTCAACCGATATCGACGAGGTCAAGCGCAAGCTCAAGTCCCTCTCG GATGACCGGCAAGCACTATTCGGCGACCGATACACCGACGAGCCGCAGGATGAGCACCTCGAACAAAGACAGCAG TTGCTGTCCGGTACGGACCGGCTAGAGCGCAGTTCGGCACGGCTGCAGCAGAGTCAGCGCATGGCCCTGGAGACC GAGGATGTTGCTCGCGGCACGCTCGGCACACTGTACGAGCAGAGGGAGCAGATCACGAATGCTCGGAACAACTTG CAGCAGAGTGAGGGTTACGTTGATACTAGTATCAAGACTTTGAGGGGCATGGCCCGTAGGATGGCTACCAATCGG ATGATCACTATTGCGATTATTACGGTTCTGGTTCTTTTGATTTTCGCTGTCATTTTCAGCAAGTTCCATTAG |
| Transcript | >Pro_DTO377G3_2|g3785.t1 ATGTCAAACCTGAACACAGATGCCGGCTCGGAGATGTTCGCCAGCTACGAGAACGAGTTGAAGCTGGTGCAAGCC GATCTGAACCAGAAGCTGGACCAGATCGCCGAGGCAAGCGGCGAGCAACGGAAATCAGCAATCGGCAACGCAACG CAAGTCCTCGAAGAAGCAACAGAACTGCTCGACCAAATGCGCATGGAGAAGCAGAACATCCCCTCCGCAGCCCGG TCAAAAGTCAACATCCGCTTCCGCAACTACTCAACCGATATCGACGAGGTCAAGCGCAAGCTCAAGTCCCTCTCG GATGACCGGCAAGCACTATTCGGCGACCGATACACCGACGAGCCGCAGGATGAGCACCTCGAACAAAGACAGCAG TTGCTGTCCGGTACGGACCGGCTAGAGCGCAGTTCGGCACGGCTGCAGCAGAGTCAGCGCATGGCCCTGGAGACC GAGGATGTTGCTCGCGGCACGCTCGGCACACTGTACGAGCAGAGGGAGCAGATCACGAATGCTCGGAACAACTTG CAGCAGAGTGAGGGTTACGTTGATACTAGTATCAAGACTTTGAGGGGCATGGCCCGTAGGATGGCTACCAATCGG ATGATCACTATTGCGATTATTACGGTTCTGGTTCTTTTGATTTTCGCTGTCATTTTCAGCAAGTTCCATTAG |
| Gene | >Pro_DTO377G3_2|g3785.t1 ATGTCAAACCTGAACACAGATGCCGGCTCGGAGATGTTCGCCAGCTACGAGAACGAGTTGAAGCTGGTGCAAGCC GATCTGAACCAGAAGCTGGACCAGATCGCCGAGGCAAGCGGCGAGCAACGGAAATCAGCAATCGGCAACGCAACG CAAGTCCTCGAAGAAGCAACAGAACTGGTGAGTCCACCGAACCCCTCACCCGGTTTTCATGCGCCGCAATGCGAG AACAACGAACAAACACAAGAACAGAACAAACTAACCCGATCAAACCCCATCTAGCTCGACCAAATGCGCATGGAG AAGCAGAACATCCCCTCCGCAGCCCGGTCAAAAGTCAACATCCGCTTCCGCAACTACTCAACCGATATCGACGAG GTCAAGCGCAAGCTCAAGTCCCTCTCGGATGACCGGCAAGCACTATTCGGCGACCGATACACCGACGAGCCGCAG GATGAGCACCTCGAACAAAGACAGCAGTTGCTGTCCGGTACGGACCGGCTAGAGCGCAGTTCGGCACGGCTGCAG CAGAGTCAGCGCATGGCCCTGGAGACCGAGGATGTTGCTCGCGGCACGCTCGGCACACTGTACGAGCAGAGGGAG CAGATCACGAATGCTCGGAACAACTTGCAGCAGAGTGAGGGTTACGTTGATACTAGTATCAAGACTTTGAGGGGC ATGGCCCGTAGGTACTGACTCCCCTTTTGTCTTGTTCTTCTATATATAGACGTGATTGCTGACCTCTTGTGTGTT GTTTAGGATGGCTACCAATCGGATGATCACTATTGCGATTATTACGGTTCTGGTTCTTTTGATTTTCGCTGTCAT TTTCAGCAAGTTCCATTAG |