Penicillium roqueforti LCP96 04111

General Properties

Protein ID	Pro_DTO377G3_2\|g3784.t1
Gene name
Location	scaffold_06:758819..760395
Strand	+
Gene length (bp)	1576
Transcript length (bp)	1374
Coding sequence length (bp)	1374
Protein length (aa)	458

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF06068	TIP49	TIP49 P-loop domain	3.4E-167	15	367
PF17856	TIP49_C	TIP49 AAA-lid domain	1.5E-19	374	440
PF00004	AAA	ATPase family associated with various cellular activities (AAA)	4.2E-07	67	117
PF05496	RuvB_N	Holliday junction DNA helicase RuvB P-loop domain	9.7E-07	38	92

GO

GO Term	Description	Terminal node
GO:0016887	ATP hydrolysis activity	Yes
GO:0006310	DNA recombination	Yes
GO:0005524	ATP binding	Yes
GO:0009378	four-way junction helicase activity	Yes
GO:0006281	DNA repair	Yes
GO:0140657	ATP-dependent activity	No
GO:0004386	helicase activity	No
GO:0000166	nucleotide binding	No
GO:0044260	cellular macromolecule metabolic process	No
GO:0043170	macromolecule metabolic process	No
GO:0003678	DNA helicase activity	No
GO:0030554	adenyl nucleotide binding	No
GO:0071704	organic substance metabolic process	No
GO:1901360	organic cyclic compound metabolic process	No
GO:0016462	pyrophosphatase activity	No
GO:0097367	carbohydrate derivative binding	No
GO:0017076	purine nucleotide binding	No
GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	No
GO:0008152	metabolic process	No
GO:0006725	cellular aromatic compound metabolic process	No
GO:0008150	biological_process	No
GO:0008094	ATP-dependent activity, acting on DNA	No
GO:0043167	ion binding	No
GO:0006259	DNA metabolic process	No
GO:0033554	cellular response to stress	No
GO:0032559	adenyl ribonucleotide binding	No
GO:0035639	purine ribonucleoside triphosphate binding	No
GO:0032553	ribonucleotide binding	No
GO:0050896	response to stimulus	No
GO:0017111	nucleoside-triphosphatase activity	No
GO:1901265	nucleoside phosphate binding	No
GO:0140640	catalytic activity, acting on a nucleic acid	No
GO:0044238	primary metabolic process	No
GO:0009987	cellular process	No
GO:0016817	hydrolase activity, acting on acid anhydrides	No
GO:0140097	catalytic activity, acting on DNA	No
GO:0051716	cellular response to stimulus	No
GO:0044237	cellular metabolic process	No
GO:0090304	nucleic acid metabolic process	No
GO:0043168	anion binding	No
GO:1901363	heterocyclic compound binding	No
GO:0003824	catalytic activity	No
GO:0016787	hydrolase activity	No
GO:0032555	purine ribonucleotide binding	No
GO:0097159	organic cyclic compound binding	No
GO:0006974	cellular response to DNA damage stimulus	No
GO:0006950	response to stress	No
GO:0006139	nucleobase-containing compound metabolic process	No
GO:0006807	nitrogen compound metabolic process	No
GO:0003674	molecular_function	No
GO:0046483	heterocycle metabolic process	No
GO:0036094	small molecule binding	No
GO:0034641	cellular nitrogen compound metabolic process	No
GO:0005488	binding	No

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 26	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
3d_25C	Three days - 25 degrees Celsius	70.63	43.03	98.24
5d_25C	Five days - 25 degrees Celsius	59.46	35.95	82.97
7d_25C	Seven days - 25 degrees Celsius	51.00	30.21	71.79
10d_25C	Ten days - 25 degrees Celsius	44.35	26.03	62.68
7d_15C	Seven days - 15 degrees Celsius	62.15	37.39	86.91
7d_30C	Seven days - 30 degrees Celsius	55.73	33.58	77.89

Differential expression

Label1	Label2	Q-value	Significant difference
3d_25C	5d_25C	0.507473	no
3d_25C	7d_25C	0.152313	no
3d_25C	7d_15C	0.649187	no
3d_25C	7d_30C	0.317104	no
3d_25C	10d_25C	0.034575	yes
5d_25C	7d_25C	0.581024	no
5d_25C	7d_15C	0.898587	no
5d_25C	7d_30C	0.837592	no
5d_25C	10d_25C	0.224539	no
7d_25C	7d_15C	0.448553	no
7d_25C	7d_30C	0.770439	no
7d_25C	10d_25C	0.632376	no
7d_15C	7d_30C	0.703224	no
7d_15C	10d_25C	0.149878	no
7d_30C	10d_25C	0.365857	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Pro_DTO377G3_2\|g3784.t1 MVQISEVKGNSRENRTAAHTHIRGLGLRSDGTPELNADGFVGQGAAREACGVVVDLIKSKKMAGRAVLLAGGPGT GKTALALAVSQELGTKVPFCPIVGSEIYSAEVKKTEALMENFRRAIGLRVRETKEVYEGEVTELTPEEAENPLGG YGRTISHLIIGLKSAKGSKKLRLDPSIYEAIQKERVTVGDVIYIEANTGSCKRVGRSDAYATEFDLEAEEYVPVP KGEVHKKKEIVQDVTLHDLDMANARPQGGQDVMSMMGQLMKPKKTEITDKLRQEINKVVNRYIDQGVAELVPGVL FIDEVHMLDIECFTYLNRALESTISPIVILASNRGHAVIRGTEISAAHGIPPDLLARLLIIPTNPYAPEEIKTII RLRAKIEGLNITEPALNKVADHGSKVSLRYALQLLTPASILSRVNGRPGAIEEADIAECEDLFLDAKRSAIIVDQ DSKNFLL*
Coding	>Pro_DTO377G3_2\|g3784.t1 ATGGTCCAGATTAGTGAAGTGAAGGGGAACTCGCGCGAGAACAGAACCGCAGCGCATACACACATTCGGGGTCTA GGCTTACGCTCTGATGGGACCCCGGAGCTCAATGCGGATGGATTCGTGGGACAAGGAGCTGCCCGTGAGGCATGC GGTGTTGTGGTGGACTTGATCAAGTCAAAGAAGATGGCTGGACGAGCTGTGCTGCTTGCTGGTGGCCCTGGTACC GGAAAAACTGCTCTTGCTCTTGCTGTATCGCAGGAGCTAGGAACTAAGGTTCCTTTCTGCCCTATTGTTGGCAGT GAAATCTATTCCGCTGAGGTCAAGAAGACTGAAGCACTGATGGAGAACTTCCGGAGAGCTATTGGCCTCCGTGTT CGCGAAACAAAGGAAGTTTATGAGGGAGAGGTGACAGAGCTTACCCCCGAGGAGGCTGAGAACCCACTGGGCGGA TACGGGCGCACAATTAGCCACCTGATCATCGGATTGAAGTCCGCTAAGGGCTCCAAGAAGCTGCGCCTGGACCCT AGCATCTACGAAGCCATCCAGAAAGAGCGTGTCACAGTCGGAGATGTCATCTACATTGAAGCCAACACCGGCTCA TGCAAGCGAGTCGGGCGATCCGATGCCTATGCTACCGAATTCGATCTTGAGGCTGAGGAGTATGTGCCTGTCCCC AAGGGTGAGGTTCACAAGAAGAAGGAGATTGTTCAGGATGTGACCCTTCACGACCTGGATATGGCCAACGCCCGA CCCCAGGGCGGACAAGACGTGATGAGTATGATGGGCCAGCTGATGAAGCCCAAGAAGACGGAAATCACGGACAAG TTGCGCCAGGAAATCAACAAGGTTGTCAACAGGTACATTGATCAGGGTGTCGCAGAGTTGGTTCCCGGTGTTCTC TTCATCGATGAGGTGCACATGCTCGACATTGAGTGCTTCACATATCTGAACCGCGCCCTCGAATCGACCATCTCC CCGATTGTCATCCTCGCCTCCAACCGTGGCCACGCCGTTATTCGCGGTACTGAAATCAGTGCCGCACACGGTATC CCACCTGATCTGCTTGCCCGCCTTCTTATCATCCCCACCAACCCCTACGCCCCCGAGGAGATCAAGACTATCATC CGGCTGCGCGCCAAGATTGAAGGCCTCAATATCACAGAGCCTGCCTTGAACAAGGTCGCTGACCATGGAAGCAAG GTCAGCTTGCGGTATGCCCTGCAGCTGTTGACCCCCGCAAGCATTCTCTCGCGTGTCAATGGCCGCCCCGGCGCA ATTGAGGAGGCTGATATTGCGGAGTGCGAGGATCTCTTCCTGGATGCCAAGCGTAGCGCAATCATTGTTGATCAA GATAGCAAGAATTTCCTGTTATAA
Transcript	>Pro_DTO377G3_2\|g3784.t1 ATGGTCCAGATTAGTGAAGTGAAGGGGAACTCGCGCGAGAACAGAACCGCAGCGCATACACACATTCGGGGTCTA GGCTTACGCTCTGATGGGACCCCGGAGCTCAATGCGGATGGATTCGTGGGACAAGGAGCTGCCCGTGAGGCATGC GGTGTTGTGGTGGACTTGATCAAGTCAAAGAAGATGGCTGGACGAGCTGTGCTGCTTGCTGGTGGCCCTGGTACC GGAAAAACTGCTCTTGCTCTTGCTGTATCGCAGGAGCTAGGAACTAAGGTTCCTTTCTGCCCTATTGTTGGCAGT GAAATCTATTCCGCTGAGGTCAAGAAGACTGAAGCACTGATGGAGAACTTCCGGAGAGCTATTGGCCTCCGTGTT CGCGAAACAAAGGAAGTTTATGAGGGAGAGGTGACAGAGCTTACCCCCGAGGAGGCTGAGAACCCACTGGGCGGA TACGGGCGCACAATTAGCCACCTGATCATCGGATTGAAGTCCGCTAAGGGCTCCAAGAAGCTGCGCCTGGACCCT AGCATCTACGAAGCCATCCAGAAAGAGCGTGTCACAGTCGGAGATGTCATCTACATTGAAGCCAACACCGGCTCA TGCAAGCGAGTCGGGCGATCCGATGCCTATGCTACCGAATTCGATCTTGAGGCTGAGGAGTATGTGCCTGTCCCC AAGGGTGAGGTTCACAAGAAGAAGGAGATTGTTCAGGATGTGACCCTTCACGACCTGGATATGGCCAACGCCCGA CCCCAGGGCGGACAAGACGTGATGAGTATGATGGGCCAGCTGATGAAGCCCAAGAAGACGGAAATCACGGACAAG TTGCGCCAGGAAATCAACAAGGTTGTCAACAGGTACATTGATCAGGGTGTCGCAGAGTTGGTTCCCGGTGTTCTC TTCATCGATGAGGTGCACATGCTCGACATTGAGTGCTTCACATATCTGAACCGCGCCCTCGAATCGACCATCTCC CCGATTGTCATCCTCGCCTCCAACCGTGGCCACGCCGTTATTCGCGGTACTGAAATCAGTGCCGCACACGGTATC CCACCTGATCTGCTTGCCCGCCTTCTTATCATCCCCACCAACCCCTACGCCCCCGAGGAGATCAAGACTATCATC CGGCTGCGCGCCAAGATTGAAGGCCTCAATATCACAGAGCCTGCCTTGAACAAGGTCGCTGACCATGGAAGCAAG GTCAGCTTGCGGTATGCCCTGCAGCTGTTGACCCCCGCAAGCATTCTCTCGCGTGTCAATGGCCGCCCCGGCGCA ATTGAGGAGGCTGATATTGCGGAGTGCGAGGATCTCTTCCTGGATGCCAAGCGTAGCGCAATCATTGTTGATCAA GATAGCAAGAATTTCCTGTTATAA
Gene	>Pro_DTO377G3_2\|g3784.t1 ATGGTCCAGATTAGTGAAGTGAAGGGGAACTCGCGCGAGAACAGAACCGCAGCGCATACACACATTCGGGGTCTA GGCTTACGCTCTGATGGGACCCCGGAGCTCAATGCGGATGGATTCGTGGGACAAGGAGCTGCCCGTGAGGTGAGT GGATAGCAACACTGAATCCAGGGTATCTGGTTCGCAGTAACGATAACTAACGGTTTAAACCATCGGCAGGCATGC GGTGTTGTGGTGGACTTGATCAAGTCAAAGAAGATGGCTGGACGAGCTGTGCTGCTTGCTGGTGGCCCTGGTACC GGAAAAACTGCTCTTGCTCTTGCTGTATCGCAGGAGCTAGGAACTAAGGTTCCTTTCTGCCCTATTGTTGGCAGT GAAATCTATTCCGCTGAGGTCAAGAAGACTGAAGCACTGATGGAGAACTTCCGGAGAGCTATTGGTACGCAATAC GACATCAGGGAAAAACGCCACAAGCTAGAAAATTAAGCTAACGCATGACAGGCCTCCGTGTTCGCGAAACAAAGG AAGTTTATGAGGGAGAGGTGACAGAGCTTACCCCCGAGGAGGCTGAGAACCCACTGGGCGGATACGGGCGCACAA TTAGCCACCTGATCATCGGATTGAAGTCCGCTAAGGGCTCCAAGAAGCTGCGCCTGGACCCTAGCATCTACGAAG CCATCCAGAAAGAGCGTGTCACAGTCGGAGATGTCATCTACATTGAAGCCAACACCGGCTCATGCAAGCGAGTCG GGCGATCCGATGCCTATGCTACCGAATTCGATCTTGAGGCTGAGGAGTATGTGCCTGTCCCCAAGGGTGAGGTTC ACAAGAAGAAGGAGATTGTTCAGGATGTGACCCTTCACGACCTGGATATGGCCAACGCCCGACCCCAGGGCGGAC AAGACGTGATGAGTATGATGGGCCAGCTGATGAAGCCCAAGAAGACGGAAATCACGGACAAGTTGCGCCAGGAAA TCAACAAGGTTGTCAACAGGTACATTGATCAGGGTGTCGCAGAGTTGGTTCCCGGTGTTCTCTTCATCGATGAGG TACGTGGAGAAAGTTTATGCTGTCAATTATTGGATCATGTCTCTGACTTCGTTTCTTCGTCTAGGTGCACATGCT CGACATTGAGTGCTTCACATATCTGAACCGCGCCCTCGAATCGACCATCTCCCCGATTGTCATCCTCGCCTCCAA CCGTGGCCACGCCGTTATTCGCGGTACTGAAATCAGTGCCGCACACGGTATCCCACCTGATCTGCTTGCCCGCCT TCTTATCATCCCCACCAACCCCTACGCCCCCGAGGAGATCAAGACTATCATCCGGCTGCGCGCCAAGATTGAAGG CCTCAATATCACAGAGCCTGCCTTGAACAAGGTCGCTGACCATGGAAGCAAGGTCAGCTTGCGGTATGCCCTGCA GCTGTTGACCCCCGCAAGCATTCTCTCGCGTGTCAATGGCCGCCCCGGCGCAATTGAGGAGGCTGATATTGCGGA GTGCGAGGATCTCTTCCTGGATGCCAAGCGTAGCGCAATCATTGTTGATCAAGATAGCAAGAATTTCCTGTTATA A

Fungal Genomics

General Properties

PFAM Domains

GO

SignalP

Transmembrane Domains

Transcription Factor Class

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Sequences