© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3764.t1 |
| Gene name | |
| Location | scaffold_06:689487..690011 |
| Strand | - |
| Gene length (bp) | 524 |
| Transcript length (bp) | 261 |
| Coding sequence length (bp) | 261 |
| Protein length (aa) | 87 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF15879 | MWFE | NADH-ubiquinone oxidoreductase MWFE subunit | 1.1E-27 | 4 | 58 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 5 | 27 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 842.36 | 501.70 | 1183.01 |
| 5d_25C | Five days - 25 degrees Celsius | 575.43 | 325.79 | 825.07 |
| 7d_25C | Seven days - 25 degrees Celsius | 573.81 | 324.98 | 822.63 |
| 10d_25C | Ten days - 25 degrees Celsius | 470.77 | 258.86 | 682.67 |
| 7d_15C | Seven days - 15 degrees Celsius | 707.78 | 411.66 | 1003.89 |
| 7d_30C | Seven days - 30 degrees Celsius | 385.30 | 196.12 | 574.47 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.105018 | no |
| 3d_25C | 7d_25C | 0.100169 | no |
| 3d_25C | 7d_15C | 0.527933 | no |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.009446 | yes |
| 5d_25C | 7d_25C | 0.994324 | no |
| 5d_25C | 7d_15C | 0.451504 | no |
| 5d_25C | 7d_30C | 0.123662 | no |
| 5d_25C | 10d_25C | 0.496126 | no |
| 7d_25C | 7d_15C | 0.447910 | no |
| 7d_25C | 7d_30C | 0.129833 | no |
| 7d_25C | 10d_25C | 0.507267 | no |
| 7d_15C | 7d_30C | 0.013211 | yes |
| 7d_15C | 10d_25C | 0.087754 | no |
| 7d_30C | 10d_25C | 0.529320 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3764.t1 MGVPFEALIPYGIIMTMFGVTGYGLHYVKRFANDGKKARWNRDLWDRVMMERDLRITGSFRGQSSNHQAPTGFEV SNPWKIENRIY* |
| Coding | >Pro_DTO377G3_2|g3764.t1 ATGGGTGTCCCTTTTGAGGCTCTGATTCCCTATGGGATTATCATGACCATGTTTGGTGTGACTGGCTACGGTCTC CACTATGTCAAGCGTTTTGCCAACGATGGCAAGAAGGCGCGCTGGAACCGGGACCTGTGGGATAGAGTAATGATG GAGAGAGACCTGCGCATCACAGGCTCATTCCGTGGGCAGTCCAGCAACCACCAAGCACCCACTGGATTTGAAGTC AGCAACCCTTGGAAGATCGAGAATCGGATCTACTAG |
| Transcript | >Pro_DTO377G3_2|g3764.t1 ATGGGTGTCCCTTTTGAGGCTCTGATTCCCTATGGGATTATCATGACCATGTTTGGTGTGACTGGCTACGGTCTC CACTATGTCAAGCGTTTTGCCAACGATGGCAAGAAGGCGCGCTGGAACCGGGACCTGTGGGATAGAGTAATGATG GAGAGAGACCTGCGCATCACAGGCTCATTCCGTGGGCAGTCCAGCAACCACCAAGCACCCACTGGATTTGAAGTC AGCAACCCTTGGAAGATCGAGAATCGGATCTACTAG |
| Gene | >Pro_DTO377G3_2|g3764.t1 ATGGGTGTCCCTTTTGAGGCTCTGATTCCCTATGGGATTATCATGACCGTACGTACCATTGGTCAATGCCTGCCG AGACTATAGCTCACCAATCGCTACAGATGTTTGGTGTGACTGGCTACGGTCTCCACTATGTCAAGCGTTTTGCCA ACGATGGCAAGAAGGCGCGCTGGAACCGGGACCTGTGGGATAGAGTAAGTGTTTCATTCTCGTCGGCTGCGGTCG GGACTTAGAGGCACATTAGCTAACAATTTCACAGCAAAGTGAGTGATTATGAGACTATCGGCCGACCCAAAAGCG CCTAGGAAAATCATATGAGACTAATAGCAACCAACAATAGTGATGGAGAGAGACCTGCGCATCACAGGCTCATTC CGTGGGCAGTCCAGCAACCACCAAGCACCCACTGGATTTGAAGTCAGCAACCCTTGGAAGGTACGAATAACAGAT CCCCTGTCCCTTTGGTTCCAAACTCCGTGCAGAAACGCTGACCCGAGACATAGATCGAGAATCGGATCTACTAG |