© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g376.t1 |
| Gene name | |
| Location | scaffold_01:954847..956269 |
| Strand | - |
| Gene length (bp) | 1422 |
| Transcript length (bp) | 1422 |
| Coding sequence length (bp) | 1422 |
| Protein length (aa) | 474 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01933 | CofD | 2-phospho-L-lactate transferase CofD | 3.4E-39 | 23 | 341 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0043743 | LPPG:FO 2-phospho-L-lactate transferase activity | Yes |
| GO:0016773 | phosphotransferase activity, alcohol group as acceptor | No |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups | No |
| GO:0016740 | transferase activity | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 33.76 | 18.99 | 48.53 |
| 5d_25C | Five days - 25 degrees Celsius | 32.72 | 18.31 | 47.13 |
| 7d_25C | Seven days - 25 degrees Celsius | 36.94 | 21.10 | 52.78 |
| 10d_25C | Ten days - 25 degrees Celsius | 32.12 | 17.92 | 46.32 |
| 7d_15C | Seven days - 15 degrees Celsius | 42.06 | 24.37 | 59.74 |
| 7d_30C | Seven days - 30 degrees Celsius | 29.79 | 16.34 | 43.24 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.933829 | no |
| 3d_25C | 7d_25C | 0.786210 | no |
| 3d_25C | 7d_15C | 0.414562 | no |
| 3d_25C | 7d_30C | 0.695966 | no |
| 3d_25C | 10d_25C | 0.893438 | no |
| 5d_25C | 7d_25C | 0.696172 | no |
| 5d_25C | 7d_15C | 0.329188 | no |
| 5d_25C | 7d_30C | 0.780137 | no |
| 5d_25C | 10d_25C | 0.962594 | no |
| 7d_25C | 7d_15C | 0.663230 | no |
| 7d_25C | 7d_30C | 0.442915 | no |
| 7d_25C | 10d_25C | 0.645238 | no |
| 7d_15C | 7d_30C | 0.166366 | no |
| 7d_15C | 10d_25C | 0.293447 | no |
| 7d_30C | 10d_25C | 0.827396 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g376.t1 MFGVQLTPNTSYLPLLTCRTGRLVRLIPDSLTNPERSAVKALFNHRLSAEAGSATNEWQSIVDGTSGLWTAITPA KKELIRSFFNVLNLEILKRARPPSSTFDFTSASVGNLFLTAARLFSGSFESAIYLLGSICGVPSDLVRVIPAINS NFSHHISASLADGTVIVGQNSISHPSEATALEHNPSSRRPSLLLADGDDDYTDSEMSDPTIYEEDHLPGSLATLR NKNIKFSKTENEDLSSRITRIWYINPYGQEIRPPANPRVLEAINDSQAIIYSIGSLYTSIIPAIILRGVGKSIVS SPARHKILILNGSLDRETGPPSAPFVASDFVEAIVSAGEESRGRGPIFHSQHQSHNSATTSVQENVRNYRALPYT NYVTHILHLDGPGTPHVDRERLTHMGIETLRLYGRKTTARDGDKETVVGMQYDPNALVQAIEVVLGKKGDAMVRG GLGNALGRRNTLDPARRDRKDMQ* |
| Coding | >Pro_DTO377G3_2|g376.t1 ATGTTCGGAGTACAACTTACGCCCAACACTTCGTATCTCCCCTTGCTAACTTGTCGGACAGGTCGATTGGTACGC TTGATTCCGGATTCGTTGACAAACCCTGAGAGGTCAGCTGTCAAGGCATTGTTTAACCATCGGCTGTCTGCGGAA GCAGGCAGCGCAACCAATGAATGGCAGTCCATCGTGGACGGCACGTCTGGGCTATGGACAGCTATCACCCCCGCC AAGAAAGAGTTGATACGCTCATTCTTCAATGTATTAAATCTGGAAATTCTGAAACGAGCCCGACCGCCATCATCA ACCTTTGACTTTACCTCCGCAAGTGTCGGAAATCTTTTCTTGACTGCCGCCCGGCTGTTCAGTGGAAGCTTCGAA AGTGCCATCTACCTACTCGGGAGCATATGCGGCGTCCCGTCAGATCTGGTGCGCGTGATCCCAGCAATCAACTCC AATTTCTCCCACCATATCTCTGCATCGCTTGCGGATGGAACTGTGATTGTCGGTCAGAATAGTATCTCGCATCCA AGCGAGGCGACGGCCCTCGAGCACAATCCCAGCTCCAGGAGACCAAGTCTGCTCCTTGCCGATGGCGACGATGAC TACACGGATTCCGAAATGTCGGACCCGACAATATACGAGGAGGATCATCTTCCTGGCTCTCTGGCAACTCTCCGC AACAAGAATATCAAATTCAGTAAAACCGAGAATGAAGATTTGAGTTCTCGAATCACTCGCATCTGGTACATCAAC CCCTACGGCCAAGAGATCCGACCGCCCGCAAATCCGCGAGTGCTTGAAGCAATAAACGACTCCCAGGCTATTATC TACAGTATCGGATCTCTCTACACATCAATCATCCCTGCTATCATCCTGCGAGGCGTCGGCAAAAGCATCGTCTCC AGTCCCGCCCGACACAAAATCCTCATTTTGAACGGATCATTGGATCGGGAAACAGGGCCTCCATCCGCACCATTT GTCGCGTCTGATTTTGTGGAAGCAATTGTAAGCGCCGGAGAGGAGAGCCGTGGACGGGGTCCGATTTTTCATTCT CAGCATCAAAGTCACAACTCAGCGACTACTTCGGTGCAAGAAAATGTTCGAAATTATAGAGCCCTTCCTTATACC AACTATGTGACCCATATCTTGCATCTGGATGGTCCGGGGACACCGCATGTGGACCGTGAGCGGCTCACACATATG GGCATTGAAACGCTTCGTCTCTATGGACGAAAAACCACGGCCAGGGATGGAGATAAGGAGACCGTTGTGGGGATG CAATATGACCCCAATGCCCTTGTGCAGGCCATTGAGGTGGTATTGGGGAAGAAGGGGGATGCAATGGTTCGTGGG GGATTGGGAAATGCGCTGGGTCGACGGAATACACTTGATCCTGCAAGAAGAGACCGAAAGGATATGCAATAG |
| Transcript | >Pro_DTO377G3_2|g376.t1 ATGTTCGGAGTACAACTTACGCCCAACACTTCGTATCTCCCCTTGCTAACTTGTCGGACAGGTCGATTGGTACGC TTGATTCCGGATTCGTTGACAAACCCTGAGAGGTCAGCTGTCAAGGCATTGTTTAACCATCGGCTGTCTGCGGAA GCAGGCAGCGCAACCAATGAATGGCAGTCCATCGTGGACGGCACGTCTGGGCTATGGACAGCTATCACCCCCGCC AAGAAAGAGTTGATACGCTCATTCTTCAATGTATTAAATCTGGAAATTCTGAAACGAGCCCGACCGCCATCATCA ACCTTTGACTTTACCTCCGCAAGTGTCGGAAATCTTTTCTTGACTGCCGCCCGGCTGTTCAGTGGAAGCTTCGAA AGTGCCATCTACCTACTCGGGAGCATATGCGGCGTCCCGTCAGATCTGGTGCGCGTGATCCCAGCAATCAACTCC AATTTCTCCCACCATATCTCTGCATCGCTTGCGGATGGAACTGTGATTGTCGGTCAGAATAGTATCTCGCATCCA AGCGAGGCGACGGCCCTCGAGCACAATCCCAGCTCCAGGAGACCAAGTCTGCTCCTTGCCGATGGCGACGATGAC TACACGGATTCCGAAATGTCGGACCCGACAATATACGAGGAGGATCATCTTCCTGGCTCTCTGGCAACTCTCCGC AACAAGAATATCAAATTCAGTAAAACCGAGAATGAAGATTTGAGTTCTCGAATCACTCGCATCTGGTACATCAAC CCCTACGGCCAAGAGATCCGACCGCCCGCAAATCCGCGAGTGCTTGAAGCAATAAACGACTCCCAGGCTATTATC TACAGTATCGGATCTCTCTACACATCAATCATCCCTGCTATCATCCTGCGAGGCGTCGGCAAAAGCATCGTCTCC AGTCCCGCCCGACACAAAATCCTCATTTTGAACGGATCATTGGATCGGGAAACAGGGCCTCCATCCGCACCATTT GTCGCGTCTGATTTTGTGGAAGCAATTGTAAGCGCCGGAGAGGAGAGCCGTGGACGGGGTCCGATTTTTCATTCT CAGCATCAAAGTCACAACTCAGCGACTACTTCGGTGCAAGAAAATGTTCGAAATTATAGAGCCCTTCCTTATACC AACTATGTGACCCATATCTTGCATCTGGATGGTCCGGGGACACCGCATGTGGACCGTGAGCGGCTCACACATATG GGCATTGAAACGCTTCGTCTCTATGGACGAAAAACCACGGCCAGGGATGGAGATAAGGAGACCGTTGTGGGGATG CAATATGACCCCAATGCCCTTGTGCAGGCCATTGAGGTGGTATTGGGGAAGAAGGGGGATGCAATGGTTCGTGGG GGATTGGGAAATGCGCTGGGTCGACGGAATACACTTGATCCTGCAAGAAGAGACCGAAAGGATATGCAATAG |
| Gene | >Pro_DTO377G3_2|g376.t1 ATGTTCGGAGTACAACTTACGCCCAACACTTCGTATCTCCCCTTGCTAACTTGTCGGACAGGTCGATTGGTACGC TTGATTCCGGATTCGTTGACAAACCCTGAGAGGTCAGCTGTCAAGGCATTGTTTAACCATCGGCTGTCTGCGGAA GCAGGCAGCGCAACCAATGAATGGCAGTCCATCGTGGACGGCACGTCTGGGCTATGGACAGCTATCACCCCCGCC AAGAAAGAGTTGATACGCTCATTCTTCAATGTATTAAATCTGGAAATTCTGAAACGAGCCCGACCGCCATCATCA ACCTTTGACTTTACCTCCGCAAGTGTCGGAAATCTTTTCTTGACTGCCGCCCGGCTGTTCAGTGGAAGCTTCGAA AGTGCCATCTACCTACTCGGGAGCATATGCGGCGTCCCGTCAGATCTGGTGCGCGTGATCCCAGCAATCAACTCC AATTTCTCCCACCATATCTCTGCATCGCTTGCGGATGGAACTGTGATTGTCGGTCAGAATAGTATCTCGCATCCA AGCGAGGCGACGGCCCTCGAGCACAATCCCAGCTCCAGGAGACCAAGTCTGCTCCTTGCCGATGGCGACGATGAC TACACGGATTCCGAAATGTCGGACCCGACAATATACGAGGAGGATCATCTTCCTGGCTCTCTGGCAACTCTCCGC AACAAGAATATCAAATTCAGTAAAACCGAGAATGAAGATTTGAGTTCTCGAATCACTCGCATCTGGTACATCAAC CCCTACGGCCAAGAGATCCGACCGCCCGCAAATCCGCGAGTGCTTGAAGCAATAAACGACTCCCAGGCTATTATC TACAGTATCGGATCTCTCTACACATCAATCATCCCTGCTATCATCCTGCGAGGCGTCGGCAAAAGCATCGTCTCC AGTCCCGCCCGACACAAAATCCTCATTTTGAACGGATCATTGGATCGGGAAACAGGGCCTCCATCCGCACCATTT GTCGCGTCTGATTTTGTGGAAGCAATTGTAAGCGCCGGAGAGGAGAGCCGTGGACGGGGTCCGATTTTTCATTCT CAGCATCAAAGTCACAACTCAGCGACTACTTCGGTGCAAGAAAATGTTCGAAATTATAGAGCCCTTCCTTATACC AACTATGTGACCCATATCTTGCATCTGGATGGTCCGGGGACACCGCATGTGGACCGTGAGCGGCTCACACATATG GGCATTGAAACGCTTCGTCTCTATGGACGAAAAACCACGGCCAGGGATGGAGATAAGGAGACCGTTGTGGGGATG CAATATGACCCCAATGCCCTTGTGCAGGCCATTGAGGTGGTATTGGGGAAGAAGGGGGATGCAATGGTTCGTGGG GGATTGGGAAATGCGCTGGGTCGACGGAATACACTTGATCCTGCAAGAAGAGACCGAAAGGATATGCAATAG |