© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3758.t1 |
| Gene name | |
| Location | scaffold_06:677202..678077 |
| Strand | - |
| Gene length (bp) | 875 |
| Transcript length (bp) | 585 |
| Coding sequence length (bp) | 585 |
| Protein length (aa) | 195 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 128 | 150 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 44.08 | 19.86 | 68.31 |
| 5d_25C | Five days - 25 degrees Celsius | 63.51 | 31.55 | 95.46 |
| 7d_25C | Seven days - 25 degrees Celsius | 57.32 | 27.49 | 87.14 |
| 10d_25C | Ten days - 25 degrees Celsius | 71.15 | 35.82 | 106.49 |
| 7d_15C | Seven days - 15 degrees Celsius | 51.15 | 23.71 | 78.60 |
| 7d_30C | Seven days - 30 degrees Celsius | 68.16 | 34.45 | 101.86 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.237906 | no |
| 3d_25C | 7d_25C | 0.441553 | no |
| 3d_25C | 7d_15C | 0.713654 | no |
| 3d_25C | 7d_30C | 0.150713 | no |
| 3d_25C | 10d_25C | 0.105926 | no |
| 5d_25C | 7d_25C | 0.792900 | no |
| 5d_25C | 7d_15C | 0.535602 | no |
| 5d_25C | 7d_30C | 0.863917 | no |
| 5d_25C | 10d_25C | 0.763961 | no |
| 7d_25C | 7d_15C | 0.775777 | no |
| 7d_25C | 7d_30C | 0.618550 | no |
| 7d_25C | 10d_25C | 0.509486 | no |
| 7d_15C | 7d_30C | 0.376975 | no |
| 7d_15C | 10d_25C | 0.294003 | no |
| 7d_30C | 10d_25C | 0.920503 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3758.t1 MIRRALTAASSARASPPSTLTSASACKLQLTRPSWHLSPSTTRLFTTTPFTAFTASPPTKDPSPFRLAANKPDSS PPSFEDVYYSQYQPKRQWPPDMSKLSPKHQFRLERKYRRRAALKYARPKFTKAVLLGQWVVIGFVIIYAVLFMEW ESDDTAFHAIRKSFFAGLQTVFSSAPPPGPRKDQKDNTASEESS* |
| Coding | >Pro_DTO377G3_2|g3758.t1 ATGATCCGACGCGCCCTAACCGCCGCCTCATCAGCGCGCGCATCACCCCCAAGCACATTGACAAGCGCCTCAGCC TGCAAGCTCCAACTCACCCGGCCATCATGGCACCTTAGCCCCAGCACCACCCGCCTCTTCACCACCACCCCGTTC ACAGCCTTCACAGCATCACCACCAACCAAAGACCCCTCACCCTTCCGCCTCGCCGCAAATAAACCCGACTCCTCC CCGCCCTCGTTCGAAGATGTCTATTACAGCCAGTACCAGCCAAAGCGCCAATGGCCTCCGGATATGTCCAAGCTG TCTCCGAAACACCAGTTCCGGCTTGAGCGCAAGTACCGGCGGCGCGCGGCGCTCAAGTATGCCCGGCCGAAGTTT ACGAAGGCTGTTTTGTTGGGACAGTGGGTTGTTATTGGATTTGTCATTATCTATGCGGTGCTATTTATGGAGTGG GAGTCGGATGATACTGCATTCCATGCGATTCGGAAAAGCTTCTTTGCTGGTCTACAGACTGTATTCTCCAGTGCA CCACCTCCTGGCCCGAGAAAGGATCAGAAGGATAATACAGCGTCTGAGGAGAGCTCGTAG |
| Transcript | >Pro_DTO377G3_2|g3758.t1 ATGATCCGACGCGCCCTAACCGCCGCCTCATCAGCGCGCGCATCACCCCCAAGCACATTGACAAGCGCCTCAGCC TGCAAGCTCCAACTCACCCGGCCATCATGGCACCTTAGCCCCAGCACCACCCGCCTCTTCACCACCACCCCGTTC ACAGCCTTCACAGCATCACCACCAACCAAAGACCCCTCACCCTTCCGCCTCGCCGCAAATAAACCCGACTCCTCC CCGCCCTCGTTCGAAGATGTCTATTACAGCCAGTACCAGCCAAAGCGCCAATGGCCTCCGGATATGTCCAAGCTG TCTCCGAAACACCAGTTCCGGCTTGAGCGCAAGTACCGGCGGCGCGCGGCGCTCAAGTATGCCCGGCCGAAGTTT ACGAAGGCTGTTTTGTTGGGACAGTGGGTTGTTATTGGATTTGTCATTATCTATGCGGTGCTATTTATGGAGTGG GAGTCGGATGATACTGCATTCCATGCGATTCGGAAAAGCTTCTTTGCTGGTCTACAGACTGTATTCTCCAGTGCA CCACCTCCTGGCCCGAGAAAGGATCAGAAGGATAATACAGCGTCTGAGGAGAGCTCGTAG |
| Gene | >Pro_DTO377G3_2|g3758.t1 ATGATCCGACGCGCCCTAACCGCCGCCTCATCAGCGCGCGCATCACCCCCAAGCACATTGACAAGCGCCTCAGCC TGCAAGCTCCAACTCACCCGGCCATCATGGCACCTTGTACGCGACCCGACCCCTCGCCAAGCAGGAGCATATAAT TAGAATGCCTCTCGAGCATATCTCCAAGCCCAAACCTCAAGCAAAAAACTAACAGGGAACCCGCGCCAACAGAGC CCCAGCACCACCCGCCTCTTCACCACCACCCCGTTCACAGCCTTCACAGCATCACCACCAACCAAAGACCCCTCA CCCTTCCGCCTCGCCGCAAATAAACCCGACTCCTCCCCGCCCTCGTTCGAAGATGTCTATTACAGCCAGTACCAG CCAAAGCGCCAATGGCCTCCGGATATGTCCAAGCTGTCTCCGAAACACCAGTTCCGGCTTGAGCGCAAGTACCGG CGGCGCGCGGCGCTCAAGTATGCCCGGCCGAAGTTTACGAAGGCTGTTTTGTTGGGACAGTGGGTTGTTATTGGA TGTGAGTTTTCTCTTGAGATGGGGTTAGGGTTGGAAATTTGTGGATTGCGAATTGCTTATACACTTGCGGTGGAT AATGGGGTTGGATTTCGAGGAAAGATGCTGACTTTTTATGATACGTAGTTGTCATTATCTATGCGGTGCTATTTA TGGAGTGGGAGTCGGATGATACTGCATTCCATGCGGTAAGATATCTCTCTGGAAATTATGCTCATTTGTGTCTTG ACTAACATTATTTCTAGATTCGGAAAAGCTTCTTTGCTGGTCTACAGACTGTATTCTCCAGTGCACCACCTCCTG GCCCGAGAAAGGATCAGAAGGATAATACAGCGTCTGAGGAGAGCTCGTAG |