Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g375.t1
Gene name
Locationscaffold_01:953929..954613
Strand+
Gene length (bp)684
Transcript length (bp)615
Coding sequence length (bp)615
Protein length (aa) 205

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF13920 zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger) 5.3E-09 118 176
PF00097 zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 4.4E-09 120 170
PF13445 zf-RING_UBOX RING-type zinc-finger 5.5E-08 120 168

GO

GO Term Description Terminal node
GO:0046872 metal ion binding Yes
GO:0043169 cation binding No
GO:0005488 binding No
GO:0043167 ion binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 53 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g375.t1
MSRNRADVVDLTTRSSRRNPISLSSSPPAAPDHATSSRHGQFTTTRGVKRRRNWNDEHDGSFVSPSAFSENEPIE
TIDMTDDSGAAALARTAAKQREDAIKAQASAESDSNLSALLSYKCPICMETPVDATSTSCGHLFCHKCIIDCLKM
SEQTRGGDSSKQHKGTCPVCRTPISRKEMPGKSKNLIPLLFLTKKRSDLPVSGP*
Coding >Pro_DTO377G3_2|g375.t1
ATGAGCAGAAACAGGGCTGATGTTGTCGACCTGACAACCAGATCATCACGGCGAAATCCTATCTCTTTATCCTCC
TCCCCGCCTGCCGCCCCGGACCATGCAACCTCTTCCCGACATGGACAGTTTACTACTACCCGCGGTGTCAAGCGT
CGCCGTAATTGGAACGATGAGCATGACGGCTCCTTCGTATCCCCTTCGGCTTTCTCCGAAAATGAGCCCATCGAA
ACAATCGACATGACCGACGACTCAGGCGCGGCCGCACTCGCTCGAACAGCGGCCAAACAGAGAGAGGATGCTATA
AAAGCGCAGGCTTCAGCGGAGAGTGATTCAAACCTTTCCGCTCTACTTTCTTATAAATGTCCCATTTGCATGGAA
ACGCCCGTGGACGCAACGAGTACCTCGTGCGGACATCTCTTTTGTCACAAGTGCATTATCGACTGCTTGAAGATG
AGCGAGCAGACACGTGGCGGTGACTCTTCAAAACAACACAAGGGGACCTGCCCAGTGTGCCGCACACCGATTTCG
CGAAAGGAGATGCCGGGGAAGTCTAAGAATCTCATTCCGTTGTTGTTTCTAACAAAAAAGCGAAGTGATCTTCCC
GTATCTGGCCCATAG
Transcript >Pro_DTO377G3_2|g375.t1
ATGAGCAGAAACAGGGCTGATGTTGTCGACCTGACAACCAGATCATCACGGCGAAATCCTATCTCTTTATCCTCC
TCCCCGCCTGCCGCCCCGGACCATGCAACCTCTTCCCGACATGGACAGTTTACTACTACCCGCGGTGTCAAGCGT
CGCCGTAATTGGAACGATGAGCATGACGGCTCCTTCGTATCCCCTTCGGCTTTCTCCGAAAATGAGCCCATCGAA
ACAATCGACATGACCGACGACTCAGGCGCGGCCGCACTCGCTCGAACAGCGGCCAAACAGAGAGAGGATGCTATA
AAAGCGCAGGCTTCAGCGGAGAGTGATTCAAACCTTTCCGCTCTACTTTCTTATAAATGTCCCATTTGCATGGAA
ACGCCCGTGGACGCAACGAGTACCTCGTGCGGACATCTCTTTTGTCACAAGTGCATTATCGACTGCTTGAAGATG
AGCGAGCAGACACGTGGCGGTGACTCTTCAAAACAACACAAGGGGACCTGCCCAGTGTGCCGCACACCGATTTCG
CGAAAGGAGATGCCGGGGAAGTCTAAGAATCTCATTCCGTTGTTGTTTCTAACAAAAAAGCGAAGTGATCTTCCC
GTATCTGGCCCATAG
Gene >Pro_DTO377G3_2|g375.t1
ATGAGCAGAAACAGGGCTGATGTTGTCGACCTGACAACCAGATCATCACGGCGAAATCCTATCTCTTTATCCTCC
TCCCCGCCTGCCGCCCCGGACCATGCAACCTCTTCCCGACATGGACAGTTTACTACTACCCGCGGTGTCAAGCGT
CGCCGTAATTGGAACGATGAGCATGACGGCTCCTTCGTATCCCCTTCGGCTTTCTCCGAAAATGAGCCCATCGAA
ACAATCGACATGACCGACGACTCAGGCGCGGCCGCACTCGCTCGAACAGCGGCCAAACAGAGAGAGGATGCTATA
AAAGCGCAGGCTTCAGCGGAGAGTGATTCAAACCTTTCCGCTCTACTTTCTTATAAATGTCCCATTTGCATGGAA
ACGCCCGTGGACGCAACGAGTACCTCGTGCGGTATGTTCTTGATTCCCTACTATACTGGATTTAAGGATGCTAGG
GCTTCTACTGACTCCTTATCTTTAGGACATCTCTTTTGTCACAAGTGCATTATCGACTGCTTGAAGATGAGCGAG
CAGACACGTGGCGGTGACTCTTCAAAACAACACAAGGGGACCTGCCCAGTGTGCCGCACACCGATTTCGCGAAAG
GAGATGCCGGGGAAGTCTAAGAATCTCATTCCGTTGTTGTTTCTAACAAAAAAGCGAAGTGATCTTCCCGTATCT
GGCCCATAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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