© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g375.t1 |
| Gene name | |
| Location | scaffold_01:953929..954613 |
| Strand | + |
| Gene length (bp) | 684 |
| Transcript length (bp) | 615 |
| Coding sequence length (bp) | 615 |
| Protein length (aa) | 205 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13920 | zf-C3HC4_3 | Zinc finger, C3HC4 type (RING finger) | 3.1E-09 | 118 | 176 |
| PF00097 | zf-C3HC4 | Zinc finger, C3HC4 type (RING finger) | 4.8E-09 | 120 | 170 |
| PF13445 | zf-RING_UBOX | RING-type zinc-finger | 1.5E-08 | 120 | 168 |
| PF13923 | zf-C3HC4_2 | Zinc finger, C3HC4 type (RING finger) | 2.5E-06 | 119 | 151 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0046872 | metal ion binding | Yes |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:0043169 | cation binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 53 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g375.t1 MSRNRADVVDLTTRSSRRNPISLSSSPPAAPDHATSSRHGQFTTTRGVKRRRNWNDEHDGSFVSPSAFSENEPIE TIDMTDDSGAAALARTAAKQREDAIKAQASAESDSNLSALLSYKCPICMETPVDATSTSCGHLFCHKCIIDCLKM SEQTRGGDSSKQHKGTCPVCRTPISRKEMPGKSKNLIPLLFLTKKRSDLPVSGP* |
| Coding | >Pro_DTO377G3_2|g375.t1 ATGAGCAGAAACAGGGCTGATGTTGTCGACCTGACAACCAGATCATCACGGCGAAATCCTATCTCTTTATCCTCC TCCCCGCCTGCCGCCCCGGACCATGCAACCTCTTCCCGACATGGACAGTTTACTACTACCCGCGGTGTCAAGCGT CGCCGTAATTGGAACGATGAGCATGACGGCTCCTTCGTATCCCCTTCGGCTTTCTCCGAAAATGAGCCCATCGAA ACAATCGACATGACCGACGACTCAGGCGCGGCCGCACTCGCTCGAACAGCGGCCAAACAGAGAGAGGATGCTATA AAAGCGCAGGCTTCAGCGGAGAGTGATTCAAACCTTTCCGCTCTACTTTCTTATAAATGTCCCATTTGCATGGAA ACGCCCGTGGACGCAACGAGTACCTCGTGCGGACATCTCTTTTGTCACAAGTGCATTATCGACTGCTTGAAGATG AGCGAGCAGACACGTGGCGGTGACTCTTCAAAACAACACAAGGGGACCTGCCCAGTGTGCCGCACACCGATTTCG CGAAAGGAGATGCCGGGGAAGTCTAAGAATCTCATTCCGTTGTTGTTTCTAACAAAAAAGCGAAGTGATCTTCCC GTATCTGGCCCATAG |
| Transcript | >Pro_DTO377G3_2|g375.t1 ATGAGCAGAAACAGGGCTGATGTTGTCGACCTGACAACCAGATCATCACGGCGAAATCCTATCTCTTTATCCTCC TCCCCGCCTGCCGCCCCGGACCATGCAACCTCTTCCCGACATGGACAGTTTACTACTACCCGCGGTGTCAAGCGT CGCCGTAATTGGAACGATGAGCATGACGGCTCCTTCGTATCCCCTTCGGCTTTCTCCGAAAATGAGCCCATCGAA ACAATCGACATGACCGACGACTCAGGCGCGGCCGCACTCGCTCGAACAGCGGCCAAACAGAGAGAGGATGCTATA AAAGCGCAGGCTTCAGCGGAGAGTGATTCAAACCTTTCCGCTCTACTTTCTTATAAATGTCCCATTTGCATGGAA ACGCCCGTGGACGCAACGAGTACCTCGTGCGGACATCTCTTTTGTCACAAGTGCATTATCGACTGCTTGAAGATG AGCGAGCAGACACGTGGCGGTGACTCTTCAAAACAACACAAGGGGACCTGCCCAGTGTGCCGCACACCGATTTCG CGAAAGGAGATGCCGGGGAAGTCTAAGAATCTCATTCCGTTGTTGTTTCTAACAAAAAAGCGAAGTGATCTTCCC GTATCTGGCCCATAG |
| Gene | >Pro_DTO377G3_2|g375.t1 ATGAGCAGAAACAGGGCTGATGTTGTCGACCTGACAACCAGATCATCACGGCGAAATCCTATCTCTTTATCCTCC TCCCCGCCTGCCGCCCCGGACCATGCAACCTCTTCCCGACATGGACAGTTTACTACTACCCGCGGTGTCAAGCGT CGCCGTAATTGGAACGATGAGCATGACGGCTCCTTCGTATCCCCTTCGGCTTTCTCCGAAAATGAGCCCATCGAA ACAATCGACATGACCGACGACTCAGGCGCGGCCGCACTCGCTCGAACAGCGGCCAAACAGAGAGAGGATGCTATA AAAGCGCAGGCTTCAGCGGAGAGTGATTCAAACCTTTCCGCTCTACTTTCTTATAAATGTCCCATTTGCATGGAA ACGCCCGTGGACGCAACGAGTACCTCGTGCGGTATGTTCTTGATTCCCTACTATACTGGATTTAAGGATGCTAGG GCTTCTACTGACTCCTTATCTTTAGGACATCTCTTTTGTCACAAGTGCATTATCGACTGCTTGAAGATGAGCGAG CAGACACGTGGCGGTGACTCTTCAAAACAACACAAGGGGACCTGCCCAGTGTGCCGCACACCGATTTCGCGAAAG GAGATGCCGGGGAAGTCTAAGAATCTCATTCCGTTGTTGTTTCTAACAAAAAAGCGAAGTGATCTTCCCGTATCT GGCCCATAG |