© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3742.t1 |
| Gene name | |
| Location | scaffold_06:617693..619121 |
| Strand | - |
| Gene length (bp) | 1428 |
| Transcript length (bp) | 1371 |
| Coding sequence length (bp) | 1371 |
| Protein length (aa) | 457 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01490 | Aa_trans | Transmembrane amino acid transporter protein | 2.6E-39 | 51 | 435 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 70 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 58 | 80 | 22 |
| 2 | 84 | 106 | 22 |
| 3 | 127 | 149 | 22 |
| 4 | 159 | 181 | 22 |
| 5 | 188 | 210 | 22 |
| 6 | 230 | 252 | 22 |
| 7 | 265 | 287 | 22 |
| 8 | 307 | 327 | 20 |
| 9 | 348 | 370 | 22 |
| 10 | 380 | 402 | 22 |
| 11 | 414 | 436 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 66.23 | 39.71 | 92.76 |
| 5d_25C | Five days - 25 degrees Celsius | 23.44 | 11.99 | 34.88 |
| 7d_25C | Seven days - 25 degrees Celsius | 19.64 | 9.46 | 29.82 |
| 10d_25C | Ten days - 25 degrees Celsius | 6.84 | 2.02 | 11.65 |
| 7d_15C | Seven days - 15 degrees Celsius | 28.37 | 15.15 | 41.59 |
| 7d_30C | Seven days - 30 degrees Celsius | 11.88 | 5.10 | 18.66 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.000700 | yes |
| 3d_25C | 7d_25C | 0.000700 | yes |
| 3d_25C | 7d_15C | 0.000700 | yes |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.608970 | no |
| 5d_25C | 7d_15C | 0.540350 | no |
| 5d_25C | 7d_30C | 0.012904 | yes |
| 5d_25C | 10d_25C | 0.000700 | yes |
| 7d_25C | 7d_15C | 0.185758 | no |
| 7d_25C | 7d_30C | 0.085064 | no |
| 7d_25C | 10d_25C | 0.003197 | yes |
| 7d_15C | 7d_30C | 0.001278 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.127356 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3742.t1 MEVNTAPPVYENDKIAERKDELTYEEEGPIKTGEVHDAFGNEEYADIKYKTLKWWQCGLLMICESVSLGVLSLPA AMATLGLVPGIILIIGLGLLATYTGYNIGLFRERYPHIQNLGDAGEILLGRFGRELFGTGQFLFCIFVMGSHILT FRVMLNTLTNHGTCSVVFSVVGMVISILLSMPRTMKGMTWISFLSFLSILSAVMITMISVGVEKHPGRVIHATVP NDLYTAFQAVSNIVFAYCAHVAFFGLIAEMETPQDFKKSLFMLQGFEICLYLTAAIVIYFYIGTDVHSPALTSAG PLMSKIAYGIAIPTIVGAGVVNGHIGLKYIYFRLCSKSGLMHQNNKRAVGLWIGLGIACWVVAWIISEAIPVFSD LNSLISALFASWFSYGLSGIYWLHLNYGQWFSSPRKIALTVLNIFIACIGLVLCVLGLYASGTAINKNSNSNSFT CADTDT* |
| Coding | >Pro_DTO377G3_2|g3742.t1 ATGGAGGTCAACACAGCACCACCCGTCTATGAGAATGACAAGATCGCAGAACGGAAAGATGAATTAACATACGAG GAGGAGGGCCCCATCAAGACTGGCGAAGTCCACGATGCCTTTGGCAACGAGGAGTACGCTGACATCAAGTATAAG ACCTTGAAGTGGTGGCAATGTGGCTTGCTCATGATCTGTGAGTCAGTCTCACTGGGTGTGTTGTCGCTGCCAGCA GCCATGGCTACCCTGGGTCTCGTCCCCGGTATCATTCTGATTATCGGCCTCGGACTTCTCGCAACATACACTGGC TACAATATTGGCCTCTTCCGTGAACGGTATCCTCATATCCAGAACCTGGGTGATGCGGGTGAGATTTTGCTAGGC CGCTTCGGCCGAGAGCTCTTTGGTACTGGCCAGTTCCTCTTCTGTATCTTCGTCATGGGCAGTCACATCCTTACC TTCCGTGTCATGCTGAACACCCTCACCAACCACGGCACCTGCTCCGTTGTGTTCAGTGTCGTCGGCATGGTTATC TCAATTCTCCTGTCCATGCCCCGTACGATGAAGGGTATGACCTGGATATCGTTCCTATCATTCCTCAGCATCTTG AGCGCCGTGATGATCACTATGATTTCCGTGGGTGTCGAGAAGCACCCCGGTCGTGTCATCCACGCCACAGTCCCC AACGACCTGTACACTGCTTTCCAGGCCGTTTCCAACATCGTCTTCGCTTACTGCGCCCACGTTGCTTTCTTCGGT TTGATCGCCGAAATGGAGACGCCCCAGGATTTCAAGAAGTCCTTGTTCATGCTTCAGGGCTTTGAGATCTGTCTC TACCTGACCGCTGCTATTGTGATCTATTTCTACATTGGCACAGACGTGCATTCCCCTGCCCTCACTTCCGCAGGA CCCCTGATGAGCAAGATTGCCTACGGCATTGCTATCCCCACCATTGTCGGCGCCGGTGTCGTCAACGGCCACATC GGCTTGAAGTACATCTACTTCCGCCTCTGCTCCAAGTCCGGTCTGATGCACCAGAACAACAAGCGTGCCGTCGGT CTCTGGATCGGTCTTGGTATTGCTTGCTGGGTCGTTGCGTGGATCATCTCCGAAGCCATTCCTGTCTTCAGCGAC CTGAACAGTTTGATCAGTGCTCTGTTCGCTTCATGGTTCAGTTACGGTCTGTCCGGTATTTACTGGCTTCACCTC AACTATGGTCAATGGTTCTCCTCTCCCCGCAAGATCGCCCTTACCGTCCTCAACATCTTCATTGCCTGCATTGGT TTGGTGCTGTGCGTTCTTGGCCTGTATGCTTCTGGTACGGCTATCAACAAGAACTCCAACAGCAACAGCTTCACC TGTGCCGACACGGATACTTAG |
| Transcript | >Pro_DTO377G3_2|g3742.t1 ATGGAGGTCAACACAGCACCACCCGTCTATGAGAATGACAAGATCGCAGAACGGAAAGATGAATTAACATACGAG GAGGAGGGCCCCATCAAGACTGGCGAAGTCCACGATGCCTTTGGCAACGAGGAGTACGCTGACATCAAGTATAAG ACCTTGAAGTGGTGGCAATGTGGCTTGCTCATGATCTGTGAGTCAGTCTCACTGGGTGTGTTGTCGCTGCCAGCA GCCATGGCTACCCTGGGTCTCGTCCCCGGTATCATTCTGATTATCGGCCTCGGACTTCTCGCAACATACACTGGC TACAATATTGGCCTCTTCCGTGAACGGTATCCTCATATCCAGAACCTGGGTGATGCGGGTGAGATTTTGCTAGGC CGCTTCGGCCGAGAGCTCTTTGGTACTGGCCAGTTCCTCTTCTGTATCTTCGTCATGGGCAGTCACATCCTTACC TTCCGTGTCATGCTGAACACCCTCACCAACCACGGCACCTGCTCCGTTGTGTTCAGTGTCGTCGGCATGGTTATC TCAATTCTCCTGTCCATGCCCCGTACGATGAAGGGTATGACCTGGATATCGTTCCTATCATTCCTCAGCATCTTG AGCGCCGTGATGATCACTATGATTTCCGTGGGTGTCGAGAAGCACCCCGGTCGTGTCATCCACGCCACAGTCCCC AACGACCTGTACACTGCTTTCCAGGCCGTTTCCAACATCGTCTTCGCTTACTGCGCCCACGTTGCTTTCTTCGGT TTGATCGCCGAAATGGAGACGCCCCAGGATTTCAAGAAGTCCTTGTTCATGCTTCAGGGCTTTGAGATCTGTCTC TACCTGACCGCTGCTATTGTGATCTATTTCTACATTGGCACAGACGTGCATTCCCCTGCCCTCACTTCCGCAGGA CCCCTGATGAGCAAGATTGCCTACGGCATTGCTATCCCCACCATTGTCGGCGCCGGTGTCGTCAACGGCCACATC GGCTTGAAGTACATCTACTTCCGCCTCTGCTCCAAGTCCGGTCTGATGCACCAGAACAACAAGCGTGCCGTCGGT CTCTGGATCGGTCTTGGTATTGCTTGCTGGGTCGTTGCGTGGATCATCTCCGAAGCCATTCCTGTCTTCAGCGAC CTGAACAGTTTGATCAGTGCTCTGTTCGCTTCATGGTTCAGTTACGGTCTGTCCGGTATTTACTGGCTTCACCTC AACTATGGTCAATGGTTCTCCTCTCCCCGCAAGATCGCCCTTACCGTCCTCAACATCTTCATTGCCTGCATTGGT TTGGTGCTGTGCGTTCTTGGCCTGTATGCTTCTGGTACGGCTATCAACAAGAACTCCAACAGCAACAGCTTCACC TGTGCCGACACGGATACTTAG |
| Gene | >Pro_DTO377G3_2|g3742.t1 ATGGAGGTCAACACAGCACCACCCGTCTATGAGAATGACAAGATCGCAGAACGGAAAGATGAATTAACATACGAG GAGGAGGGCCCCATCAAGACTGGCGAAGTCCACGATGCCTTTGGCAACGAGGAGTACGCTGACATCAAGTATAAG ACCTTGAAGTGGTGGTATGTACTATCGTTGGGAAAAGAGCCTCTCGATTGACCGTGCTAACACGTCTTCAGGCAA TGTGGCTTGCTCATGATCTGTGAGTCAGTCTCACTGGGTGTGTTGTCGCTGCCAGCAGCCATGGCTACCCTGGGT CTCGTCCCCGGTATCATTCTGATTATCGGCCTCGGACTTCTCGCAACATACACTGGCTACAATATTGGCCTCTTC CGTGAACGGTATCCTCATATCCAGAACCTGGGTGATGCGGGTGAGATTTTGCTAGGCCGCTTCGGCCGAGAGCTC TTTGGTACTGGCCAGTTCCTCTTCTGTATCTTCGTCATGGGCAGTCACATCCTTACCTTCCGTGTCATGCTGAAC ACCCTCACCAACCACGGCACCTGCTCCGTTGTGTTCAGTGTCGTCGGCATGGTTATCTCAATTCTCCTGTCCATG CCCCGTACGATGAAGGGTATGACCTGGATATCGTTCCTATCATTCCTCAGCATCTTGAGCGCCGTGATGATCACT ATGATTTCCGTGGGTGTCGAGAAGCACCCCGGTCGTGTCATCCACGCCACAGTCCCCAACGACCTGTACACTGCT TTCCAGGCCGTTTCCAACATCGTCTTCGCTTACTGCGCCCACGTTGCTTTCTTCGGTTTGATCGCCGAAATGGAG ACGCCCCAGGATTTCAAGAAGTCCTTGTTCATGCTTCAGGGCTTTGAGATCTGTCTCTACCTGACCGCTGCTATT GTGATCTATTTCTACATTGGCACAGACGTGCATTCCCCTGCCCTCACTTCCGCAGGACCCCTGATGAGCAAGATT GCCTACGGCATTGCTATCCCCACCATTGTCGGCGCCGGTGTCGTCAACGGCCACATCGGCTTGAAGTACATCTAC TTCCGCCTCTGCTCCAAGTCCGGTCTGATGCACCAGAACAACAAGCGTGCCGTCGGTCTCTGGATCGGTCTTGGT ATTGCTTGCTGGGTCGTTGCGTGGATCATCTCCGAAGCCATTCCTGTCTTCAGCGACCTGAACAGTTTGATCAGT GCTCTGTTCGCTTCATGGTTCAGTTACGGTCTGTCCGGTATTTACTGGCTTCACCTCAACTATGGTCAATGGTTC TCCTCTCCCCGCAAGATCGCCCTTACCGTCCTCAACATCTTCATTGCCTGCATTGGTTTGGTGCTGTGCGTTCTT GGCCTGTATGCTTCTGGTACGGCTATCAACAAGAACTCCAACAGCAACAGCTTCACCTGTGCCGACACGGATACT TAG |