© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3738.t1 |
| Gene name | |
| Location | scaffold_06:607963..609717 |
| Strand | - |
| Gene length (bp) | 1754 |
| Transcript length (bp) | 1368 |
| Coding sequence length (bp) | 1368 |
| Protein length (aa) | 456 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01490 | Aa_trans | Transmembrane amino acid transporter protein | 1.8E-39 | 51 | 434 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 48 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 73 | 95 | 22 |
| 2 | 129 | 151 | 22 |
| 3 | 156 | 178 | 22 |
| 4 | 185 | 207 | 22 |
| 5 | 227 | 249 | 22 |
| 6 | 262 | 284 | 22 |
| 7 | 304 | 323 | 19 |
| 8 | 344 | 366 | 22 |
| 9 | 376 | 398 | 22 |
| 10 | 411 | 433 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 7.05 | 2.53 | 11.56 |
| 5d_25C | Five days - 25 degrees Celsius | 2.45 | 0.45 | 4.44 |
| 7d_25C | Seven days - 25 degrees Celsius | 2.23 | 0.38 | 4.08 |
| 10d_25C | Ten days - 25 degrees Celsius | 2.33 | 0.20 | 4.47 |
| 7d_15C | Seven days - 15 degrees Celsius | 10.07 | 4.09 | 16.05 |
| 7d_30C | Seven days - 30 degrees Celsius | 7.67 | 2.64 | 12.70 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.008133 | yes |
| 3d_25C | 7d_25C | 0.008469 | yes |
| 3d_25C | 7d_15C | 0.337898 | no |
| 3d_25C | 7d_30C | 0.873154 | no |
| 3d_25C | 10d_25C | 0.018838 | yes |
| 5d_25C | 7d_25C | 0.894510 | no |
| 5d_25C | 7d_15C | 0.000700 | yes |
| 5d_25C | 7d_30C | 0.004840 | yes |
| 5d_25C | 10d_25C | 0.951510 | no |
| 7d_25C | 7d_15C | 0.000700 | yes |
| 7d_25C | 7d_30C | 0.002761 | yes |
| 7d_25C | 10d_25C | 0.955745 | no |
| 7d_15C | 7d_30C | 0.506382 | no |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.011688 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3738.t1 MSVPEAPHPIQDYEVYNDSTDMEKKAYPVDPPDDPFGNEESGEVKYRIMPWWQAGTLMVAENISLGILSLPSAVA TLGIIPAFVIIMFLSAISWYTGYTMGQFKQRYPQVHSMGDAGELLLGPIGREIFFVGQLLFIIFLMASHILTFSV LFNTITNHGTCTIVFGVVGLVVSCVAALPRTAEKVFWMSIISAISILVATIVTMISIGVQAPSDVQNDIVATPTF QEGFLAVTNIVFAFIAHVSFFGIMSEMQDPRDFPKALAMLQVIDTTMYVVTAMVIYCYAGPTVESPALSSAGPIM KKVAYGLAIPTVIVAGVVFGHVACKYIYVRIFRGDRSHHMHQKTFLATGTWVAIGLTTWTVAWVIAESIPVFNEL LSLISALFGSWFSYGLPAIFWFMMNKGKLFSSTRKIALTIINLAILGIACTICGLGLYVSGVAINESSSNASWTC ANNAT* |
| Coding | >Pro_DTO377G3_2|g3738.t1 ATGAGTGTCCCCGAAGCACCCCATCCTATTCAGGACTACGAAGTGTACAATGACTCAACCGACATGGAGAAGAAG GCGTACCCGGTCGACCCCCCGGATGATCCCTTTGGGAACGAAGAATCTGGGGAAGTAAAGTATCGTATTATGCCA TGGTGGCAAGCTGGAACGTTGATGGTTGCTGAAAACATTTCGCTGGGTATTCTATCTCTTCCATCCGCAGTAGCA ACCCTCGGAATCATCCCAGCATTTGTCATTATTATGTTTTTGTCCGCCATCTCGTGGTACACTGGATACACCATG GGCCAGTTCAAGCAGCGTTATCCCCAGGTCCACAGCATGGGCGATGCGGGCGAGCTTCTTCTAGGCCCTATCGGA CGCGAGATTTTCTTTGTCGGCCAGCTGCTGTTCATCATCTTCTTGATGGCCAGCCACATTCTCACATTCTCGGTG TTGTTCAACACCATCACGAACCACGGTACCTGCACTATTGTATTTGGAGTTGTCGGCTTGGTCGTCAGCTGTGTT GCGGCCCTCCCGCGGACAGCAGAGAAGGTCTTTTGGATGTCCATCATCTCTGCCATCAGTATCCTGGTAGCCACT ATCGTCACGATGATTTCCATCGGTGTGCAGGCGCCCTCTGATGTCCAGAACGATATCGTCGCGACCCCGACCTTC CAGGAAGGCTTCTTGGCGGTTACCAACATCGTCTTTGCCTTCATTGCTCACGTGTCTTTCTTCGGTATCATGTCG GAGATGCAGGATCCCCGCGATTTCCCCAAGGCCCTCGCTATGCTCCAGGTTATCGATACTACTATGTATGTTGTG ACGGCTATGGTAATCTACTGCTATGCGGGCCCGACTGTCGAGTCTCCGGCTCTATCGTCGGCTGGACCTATAATG AAGAAAGTTGCCTATGGCCTGGCAATCCCAACGGTCATTGTTGCCGGTGTTGTTTTCGGCCATGTTGCATGCAAG TACATCTATGTTCGAATCTTCCGCGGCGATCGCTCCCACCACATGCACCAGAAGACTTTCTTGGCTACAGGTACA TGGGTCGCGATCGGCCTGACTACCTGGACTGTTGCGTGGGTCATTGCAGAGTCCATTCCAGTGTTCAACGAGTTG TTGAGTTTGATTAGTGCCCTATTCGGAAGCTGGTTTAGCTACGGCCTCCCTGCCATTTTCTGGTTCATGATGAAC AAGGGAAAGTTGTTCTCTTCAACTAGAAAGATAGCCCTGACTATTATCAACTTGGCCATTCTTGGAATTGCTTGT ACTATTTGTGGATTGGGACTCTATGTCTCGGGCGTGGCTATCAACGAGAGCTCGTCCAATGCCAGCTGGACCTGT GCCAACAATGCCACCTAG |
| Transcript | >Pro_DTO377G3_2|g3738.t1 ATGAGTGTCCCCGAAGCACCCCATCCTATTCAGGACTACGAAGTGTACAATGACTCAACCGACATGGAGAAGAAG GCGTACCCGGTCGACCCCCCGGATGATCCCTTTGGGAACGAAGAATCTGGGGAAGTAAAGTATCGTATTATGCCA TGGTGGCAAGCTGGAACGTTGATGGTTGCTGAAAACATTTCGCTGGGTATTCTATCTCTTCCATCCGCAGTAGCA ACCCTCGGAATCATCCCAGCATTTGTCATTATTATGTTTTTGTCCGCCATCTCGTGGTACACTGGATACACCATG GGCCAGTTCAAGCAGCGTTATCCCCAGGTCCACAGCATGGGCGATGCGGGCGAGCTTCTTCTAGGCCCTATCGGA CGCGAGATTTTCTTTGTCGGCCAGCTGCTGTTCATCATCTTCTTGATGGCCAGCCACATTCTCACATTCTCGGTG TTGTTCAACACCATCACGAACCACGGTACCTGCACTATTGTATTTGGAGTTGTCGGCTTGGTCGTCAGCTGTGTT GCGGCCCTCCCGCGGACAGCAGAGAAGGTCTTTTGGATGTCCATCATCTCTGCCATCAGTATCCTGGTAGCCACT ATCGTCACGATGATTTCCATCGGTGTGCAGGCGCCCTCTGATGTCCAGAACGATATCGTCGCGACCCCGACCTTC CAGGAAGGCTTCTTGGCGGTTACCAACATCGTCTTTGCCTTCATTGCTCACGTGTCTTTCTTCGGTATCATGTCG GAGATGCAGGATCCCCGCGATTTCCCCAAGGCCCTCGCTATGCTCCAGGTTATCGATACTACTATGTATGTTGTG ACGGCTATGGTAATCTACTGCTATGCGGGCCCGACTGTCGAGTCTCCGGCTCTATCGTCGGCTGGACCTATAATG AAGAAAGTTGCCTATGGCCTGGCAATCCCAACGGTCATTGTTGCCGGTGTTGTTTTCGGCCATGTTGCATGCAAG TACATCTATGTTCGAATCTTCCGCGGCGATCGCTCCCACCACATGCACCAGAAGACTTTCTTGGCTACAGGTACA TGGGTCGCGATCGGCCTGACTACCTGGACTGTTGCGTGGGTCATTGCAGAGTCCATTCCAGTGTTCAACGAGTTG TTGAGTTTGATTAGTGCCCTATTCGGAAGCTGGTTTAGCTACGGCCTCCCTGCCATTTTCTGGTTCATGATGAAC AAGGGAAAGTTGTTCTCTTCAACTAGAAAGATAGCCCTGACTATTATCAACTTGGCCATTCTTGGAATTGCTTGT ACTATTTGTGGATTGGGACTCTATGTCTCGGGCGTGGCTATCAACGAGAGCTCGTCCAATGCCAGCTGGACCTGT GCCAACAATGCCACCTAG |
| Gene | >Pro_DTO377G3_2|g3738.t1 ATGAGTGTCCCCGAAGCACCCCATCCTATTCAGGACTACGAAGTGTACAATGACTCAACCGACATGGAGAAGAAG GCGTACCCGGTCGACCCCCCGGATGATCCCTTTGGGAACGAAGAATCTGGGGAAGTAAAGTATCGTATTATGCCA TGGTGGTCAGTATCTCACTCTGTTTACTATTTTTATTGCATCAAAGAGCACATTTCTGACTTTTATATACAGGCA AGCTGGAACGTGTGAGAGCCCATCATTAACCCTAGTCAACAGGAACCCCATTCTAACACTGTTCATGTAGTGATG GTTGCTGAAAACATTTCGCTGGGTATTCTATCTCTTCCATCCGCAGTAGCAACCCTCGGAATCATCCCGTAAGAA AATTTCTACCTCCACGATGCAGAAAGAAGGCTGACATCTCCCAGAGCATTTGTCATTATTATGTTTTTGTCCGCC ATCTCGTGGTACACTGGATACACCATGGGCCAGTTCAAGCAGCGTTATCCCCAGGTCCACAGCATGGGCGATGCG GGCGAGCTTCTTCTAGGCCCTATCGGACGCGAGATTTTCTTTGTCGGCCAGCTGCTGTTCATCATCTTCTTGATG GCCAGCCACATTCTCACATTCTCGGTGTTGTTCAACACCATCACGAACCACGGTACCTGCACTATTGTATTTGGA GTTGTCGGCTTGGTCGTCAGCTGTGTTGCGGCCCTCCCGCGGACAGCAGAGAAGGTCTTTTGGATGTCCATCATC TCTGCCATCAGTATCCTGGTAGCCACTATCGTCACGATGATTTCCATCGGTGTGCAGGCGCCCTCTGATGTCCAG AACGATATCGTCGCGACCCCGACCTTCCAGGAAGGCTTCTTGGCGGTTACCAACATCGTCTTTGCCTTCATTGCT CACGTGTCTTTCTTCGGTATCATGTCGGAGATGCAGGATCCCCGCGATTTCCCCAAGGCCCTCGCTATGCTCCAG GTTATCGATACTACTATGTATGTTGTGACGGCTATGGTAATCTACTGCTATGCGGGCCCGACTGTCGAGTCTCCG GCTCTATCGTCGGCTGGACCTATAATGAAGAAAGTTGCCTATGGCCTGGCAATCCCAACGGTGTGTTATATCTCC TTGCAGTCGATTCGGGAGTCTGTTCTAATCTCTGATAGGTCATTGTTGCCGGTGTTGTTTTCGGCCATGTTGCAT GCAAGTACATCTATGTTCGAATCTTCCGCGGCGATCGCTCCCACCACATGCACCAGAAGACTTTCTTGGCTACAG GTACATGGGTCGCGATCGGCCTGACTACCTGGACTGTTGCGTGGGTCATTGCAGAGTCCATTCCAGTGTTCAACG AGTTGTTGAGTTTGATTGTATGTTCTATACTCATTTATTACCGTGCGTCTACTAAGTTGTTATACAGAGTGCCCT ATTCGGAAGCTGGTTTAGCTGTAAGTCGACTTCTGAGACTAAGATTGATGCGAAATAGATTACTGACTGAGAACA GACGGCCTCCCTGCCATTTTCTGGTTCATGATGAACAAGGGAAAGTTGTTCTCTTCAACTAGAAAGATAGCCCTG ACTATTATCAACTTGGCCATTCTTGGAATTGCTTGTACTATTGTATGTTTTGTCTCTCTGTGTGATTCTGAATTT CCTGCTGACAAGAATAGTGTGGATTGGGACTCTATGTCTCGGGCGTGGCTATCAACGAGAGCTCGTCCAATGCCA GCTGGACCTGTGCCAACAATGCCACCTAG |