© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g373.t1 |
| Gene name | |
| Location | scaffold_01:946918..949040 |
| Strand | - |
| Gene length (bp) | 2122 |
| Transcript length (bp) | 1917 |
| Coding sequence length (bp) | 1917 |
| Protein length (aa) | 639 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01544 | CorA | CorA-like Mg2+ transporter protein | 4.1E-18 | 511 | 606 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0030001 | metal ion transport | Yes |
| GO:0046873 | metal ion transmembrane transporter activity | Yes |
| GO:0022890 | inorganic cation transmembrane transporter activity | No |
| GO:0006810 | transport | No |
| GO:0008150 | biological_process | No |
| GO:0005575 | cellular_component | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0051234 | establishment of localization | No |
| GO:0008324 | cation transmembrane transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0006812 | cation transport | No |
| GO:0006811 | ion transport | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0051179 | localization | No |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | No |
| GO:0005215 | transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0009987 | cellular process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 69 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 558 | 580 | 22 |
| 2 | 590 | 608 | 18 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 84.84 | 51.60 | 118.08 |
| 5d_25C | Five days - 25 degrees Celsius | 76.42 | 46.80 | 106.04 |
| 7d_25C | Seven days - 25 degrees Celsius | 76.14 | 46.59 | 105.68 |
| 10d_25C | Ten days - 25 degrees Celsius | 83.31 | 50.82 | 115.81 |
| 7d_15C | Seven days - 15 degrees Celsius | 87.49 | 51.96 | 123.01 |
| 7d_30C | Seven days - 30 degrees Celsius | 59.47 | 35.61 | 83.33 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.714076 | no |
| 3d_25C | 7d_25C | 0.705912 | no |
| 3d_25C | 7d_15C | 0.928840 | no |
| 3d_25C | 7d_30C | 0.108295 | no |
| 3d_25C | 10d_25C | 0.958719 | no |
| 5d_25C | 7d_25C | 0.991132 | no |
| 5d_25C | 7d_15C | 0.620390 | no |
| 5d_25C | 7d_30C | 0.281659 | no |
| 5d_25C | 10d_25C | 0.764657 | no |
| 7d_25C | 7d_15C | 0.615026 | no |
| 7d_25C | 7d_30C | 0.300877 | no |
| 7d_25C | 10d_25C | 0.754442 | no |
| 7d_15C | 7d_30C | 0.080312 | no |
| 7d_15C | 10d_25C | 0.881880 | no |
| 7d_30C | 10d_25C | 0.122452 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g373.t1 MSIHSVDYAQQGPTRPEVDVEAGRPSVSSQVAPTVGEREGAASPAFTTAARVNSTETTKRRARRNTARSYHPEGF AQDPNWQPGTEPGIDPTKPLPPYTSEWSSNIPADLQRRCQITVVDFSQHEMRQYELDNDTLEQFLQREKEPWVQC RWINVNGLSWDVIKILGNHKRLHRLAIEDVVHDTNRTKVDWYSDHAFVVLTLQKLVKIQEEDSSDSEDEEENPVS PWKSRDRKSSVVSDKSSISLRRPTKWSVIMAALKDIFRFRSSTKQERKDMAKYGSSVRPGLGQNSTQNSHFGNVG ATTDTSARSLQRYRGGPNEDRIEFMERHAALSAKGLCVTLEQVSIFLHTDNEVTSFFETSADDIESPIVRRLNTP ETILRQSCDASMLLQAILDAVIDLAIPVTMAYQDAIGDLELEVLTDPDIEQSKSLYILTSEIAVLRNHMQPIVAV INALRDHRSEPVGTPGFGVLRNPLSPGATPAEFLDPRPHIGTVPPNLKSVGGTGVTISSMCHTYLGDALDHCITI VEGYDQMRRNADNMIDLIFNTIGAYQNESMKQLTLVTCLYLPMTFLTGYFGMNFTHFAGIEHSEGYFWKIAVPFV LVTIFYLMRDKIQRYAVMLAQRRLIVSSRKQRRERTKK* |
| Coding | >Pro_DTO377G3_2|g373.t1 ATGAGCATACACTCAGTCGATTATGCACAGCAGGGTCCGACACGACCCGAGGTCGATGTTGAGGCGGGTCGCCCG TCAGTCAGTTCCCAAGTCGCTCCAACAGTAGGAGAGAGAGAGGGAGCCGCGTCTCCCGCATTCACCACAGCAGCA CGAGTGAACTCCACCGAGACGACAAAACGCCGAGCCAGACGCAATACCGCCCGCTCATACCACCCCGAAGGATTC GCACAAGATCCCAATTGGCAACCAGGAACCGAACCCGGCATTGACCCAACCAAGCCGCTACCGCCATACACGTCA GAATGGTCGTCCAACATACCAGCGGACCTACAACGACGCTGCCAGATCACCGTGGTGGACTTCTCACAACATGAA ATGCGACAGTATGAGTTAGACAATGACACACTGGAGCAATTTTTGCAGCGGGAGAAAGAGCCCTGGGTGCAATGC CGGTGGATCAATGTCAATGGGTTGAGCTGGGATGTGATCAAGATTCTTGGAAATCATAAGAGATTGCATCGGCTT GCAATTGAGGATGTTGTCCATGACACTAACCGCACGAAAGTGGATTGGTACTCGGACCATGCCTTCGTTGTACTG ACATTGCAAAAGTTGGTGAAGATACAAGAAGAGGACTCCTCTGATTCGGAAGATGAGGAGGAAAATCCAGTCAGT CCATGGAAGTCAAGGGACCGGAAAAGTTCTGTGGTCAGTGACAAGAGCTCGATTTCGTTGAGGCGACCCACGAAG TGGAGTGTTATTATGGCGGCATTGAAGGACATTTTCAGGTTCAGATCCTCCACAAAACAGGAGCGCAAGGATATG GCGAAATATGGATCGAGCGTTCGTCCTGGGCTTGGACAAAATTCAACACAAAATTCCCATTTTGGAAATGTTGGG GCCACCACAGACACATCTGCCAGGAGTCTTCAGCGATATCGCGGTGGTCCGAATGAAGATCGAATTGAGTTCATG GAACGCCATGCTGCACTTTCTGCCAAAGGATTATGTGTCACTTTGGAACAAGTTTCGATCTTCCTACATACCGAT AATGAGGTGACCTCCTTTTTTGAAACGAGCGCGGATGACATCGAGTCGCCAATTGTCAGGCGCCTCAATACGCCA GAGACTATCCTTCGACAGTCATGCGATGCCAGTATGCTTTTGCAGGCCATTCTGGATGCTGTGATTGATCTTGCG ATTCCAGTAACGATGGCTTATCAAGACGCCATCGGAGACCTCGAGCTGGAGGTTCTGACTGATCCAGACATTGAA CAGTCAAAGTCCTTATATATTTTGACATCTGAGATTGCTGTTCTGCGGAACCATATGCAGCCTATAGTGGCTGTG ATTAACGCTCTCCGTGATCACCGGTCTGAGCCCGTCGGCACACCAGGCTTTGGTGTCCTAAGGAATCCCCTTAGC CCAGGTGCAACTCCTGCAGAATTTCTTGATCCCCGCCCACATATTGGGACTGTACCGCCAAATCTGAAGAGTGTC GGAGGCACAGGTGTTACGATCAGCTCTATGTGCCATACATATTTGGGCGATGCCCTAGATCATTGCATTACTATC GTTGAAGGGTACGATCAGATGCGGCGCAACGCTGATAACATGATTGACCTCATTTTCAACACTATTGGTGCCTAC CAGAACGAAAGTATGAAGCAGCTTACTCTTGTGACTTGTCTTTATCTTCCTATGACATTCTTGACAGGTTATTTC GGAATGAACTTCACGCATTTCGCGGGAATCGAACACAGTGAAGGATATTTCTGGAAGATTGCAGTGCCGTTCGTC CTCGTTACGATTTTCTACCTGATGCGCGACAAAATACAACGCTACGCTGTCATGCTTGCTCAGCGACGTTTGATT GTTAGCTCGAGGAAGCAGAGACGAGAGAGGACGAAGAAATAG |
| Transcript | >Pro_DTO377G3_2|g373.t1 ATGAGCATACACTCAGTCGATTATGCACAGCAGGGTCCGACACGACCCGAGGTCGATGTTGAGGCGGGTCGCCCG TCAGTCAGTTCCCAAGTCGCTCCAACAGTAGGAGAGAGAGAGGGAGCCGCGTCTCCCGCATTCACCACAGCAGCA CGAGTGAACTCCACCGAGACGACAAAACGCCGAGCCAGACGCAATACCGCCCGCTCATACCACCCCGAAGGATTC GCACAAGATCCCAATTGGCAACCAGGAACCGAACCCGGCATTGACCCAACCAAGCCGCTACCGCCATACACGTCA GAATGGTCGTCCAACATACCAGCGGACCTACAACGACGCTGCCAGATCACCGTGGTGGACTTCTCACAACATGAA ATGCGACAGTATGAGTTAGACAATGACACACTGGAGCAATTTTTGCAGCGGGAGAAAGAGCCCTGGGTGCAATGC CGGTGGATCAATGTCAATGGGTTGAGCTGGGATGTGATCAAGATTCTTGGAAATCATAAGAGATTGCATCGGCTT GCAATTGAGGATGTTGTCCATGACACTAACCGCACGAAAGTGGATTGGTACTCGGACCATGCCTTCGTTGTACTG ACATTGCAAAAGTTGGTGAAGATACAAGAAGAGGACTCCTCTGATTCGGAAGATGAGGAGGAAAATCCAGTCAGT CCATGGAAGTCAAGGGACCGGAAAAGTTCTGTGGTCAGTGACAAGAGCTCGATTTCGTTGAGGCGACCCACGAAG TGGAGTGTTATTATGGCGGCATTGAAGGACATTTTCAGGTTCAGATCCTCCACAAAACAGGAGCGCAAGGATATG GCGAAATATGGATCGAGCGTTCGTCCTGGGCTTGGACAAAATTCAACACAAAATTCCCATTTTGGAAATGTTGGG GCCACCACAGACACATCTGCCAGGAGTCTTCAGCGATATCGCGGTGGTCCGAATGAAGATCGAATTGAGTTCATG GAACGCCATGCTGCACTTTCTGCCAAAGGATTATGTGTCACTTTGGAACAAGTTTCGATCTTCCTACATACCGAT AATGAGGTGACCTCCTTTTTTGAAACGAGCGCGGATGACATCGAGTCGCCAATTGTCAGGCGCCTCAATACGCCA GAGACTATCCTTCGACAGTCATGCGATGCCAGTATGCTTTTGCAGGCCATTCTGGATGCTGTGATTGATCTTGCG ATTCCAGTAACGATGGCTTATCAAGACGCCATCGGAGACCTCGAGCTGGAGGTTCTGACTGATCCAGACATTGAA CAGTCAAAGTCCTTATATATTTTGACATCTGAGATTGCTGTTCTGCGGAACCATATGCAGCCTATAGTGGCTGTG ATTAACGCTCTCCGTGATCACCGGTCTGAGCCCGTCGGCACACCAGGCTTTGGTGTCCTAAGGAATCCCCTTAGC CCAGGTGCAACTCCTGCAGAATTTCTTGATCCCCGCCCACATATTGGGACTGTACCGCCAAATCTGAAGAGTGTC GGAGGCACAGGTGTTACGATCAGCTCTATGTGCCATACATATTTGGGCGATGCCCTAGATCATTGCATTACTATC GTTGAAGGGTACGATCAGATGCGGCGCAACGCTGATAACATGATTGACCTCATTTTCAACACTATTGGTGCCTAC CAGAACGAAAGTATGAAGCAGCTTACTCTTGTGACTTGTCTTTATCTTCCTATGACATTCTTGACAGGTTATTTC GGAATGAACTTCACGCATTTCGCGGGAATCGAACACAGTGAAGGATATTTCTGGAAGATTGCAGTGCCGTTCGTC CTCGTTACGATTTTCTACCTGATGCGCGACAAAATACAACGCTACGCTGTCATGCTTGCTCAGCGACGTTTGATT GTTAGCTCGAGGAAGCAGAGACGAGAGAGGACGAAGAAATAG |
| Gene | >Pro_DTO377G3_2|g373.t1 ATGAGCATACACTCAGTCGATTATGCACAGCAGGGTCCGACACGACCCGAGGTCGATGTTGAGGCGGGTCGCCCG TCAGTCAGTTCCCAAGTCGCTCCAACAGTAGGAGAGAGAGAGGGAGCCGCGTCTCCCGCATTCACCACAGCAGCA CGAGTGAACTCCACCGAGACGACAAAACGCCGAGCCAGACGCAATACCGCCCGCTCATACCACCCCGAAGGATTC GCACAAGATCCCAATTGGCAACCAGGAACCGAACCCGGCATTGACCCAACCAAGCCGCTACCGCCATACACGTCA GAATGGTCGTCCAACATACCAGCGGACCTACAACGACGCTGCCAGATCACCGTGGTGGACTTCTCACAACATGAA ATGCGACAGTATGAGTTAGACAATGACACACTGGAGCAATTTTTGCAGCGGGAGAAAGAGCCCTGGGTGCAATGC CGGTGGATCAATGTCAATGGGTTGAGCTGGGATGTGATCAAGATTCTTGGAAATCATAAGAGATTGCATCGGCTT GCAATTGAGGATGTTGTCCATGACACTAACCGCACGAAAGTGGATTGGTACTCGGACCATGCCTTCGTTGTACTG ACATTGCAAAAGTTGGTGAAGATACAAGAAGAGGACTCCTCTGATTCGGAAGATGAGGAGGAAAATCCAGTCAGT CCATGGAAGTCAAGGGACCGGAAAAGTTCTGTGGTCAGTGACAAGAGCTCGATTTCGTTGAGGCGACCCACGAAG TGGAGTGTTATTATGGCGGCATTGAAGGACATTTTCAGGTTCAGATCCTCCACAAAACAGGAGCGCAAGGATATG GCGAAATATGGATCGAGCGTTCGTCCTGGGCTTGGACAAAATTCAACACAAAATTCCCATTTTGGAAATGTTGGG GCCACCACAGACACATCTGCCAGGAGTCTTCAGCGATATCGCGGTGGTCCGAATGAAGATCGAATTGAGTTCATG GAACGCCATGCTGCACTTTCTGCCAAAGGATTATGTGTCACTTTGGAACAAGTTTCGATCTTCCTACATACCGAT AATGAGGTGACCTCCTTTTTTGAAACGAGCGCGGATGACATCGAGTCGCCAATTGTCAGGCGCCTCAATACGCCA GAGACTATCCTTCGACAGTCATGCGATGCCAGTATGCTTTTGCAGGCCATTCTGGATGCTGTGATTGATCTTGCG ATTCCAGTAACGATGGCTTATCAAGACGCCATCGGAGACCTCGAGCTGGAGGTTCTGACTGATCCAGACATTGAA CAGTCAAAGTCCTTATATATTTTGACATCTGAGATTGCTGTTCTGCGGAACCATATGCAGCCTATAGTGGCTGTG ATTAACGCTCTCCGTGATCACCGGTCTGAGCCCGTCGGCACACCAGGCTTTGGTGTCCTAAGGAATCCCCTTAGC CCAGGTGCAACTCCTGCAGAATTTCTTGATCCCCGCCCACATATTGGGACTGTACCGCCAAATCTGAAGAGTGTC GGAGGCACAGGTGTTACGATCAGCTCTATGTGCCATACATATTTGGGCGATGCCCTAGATCATTGCATTACTATC GTTGAAGGGTACGATCAGATGCGGCGCAACGCTGATAACATGATTGACCTCATTTTCAACACTATTGGTACGTTC AACTTCTATGGATAATTCAAGAGAAAAACAACGGACTAATATCCTGTGCAGGTGCCTACCAGAACGAAAGTATGA AGCAGCTTACTCTTGTGACTTGTCTTTATCTTCCTATGACATTCTTGACAGTATGTATGACTTGAAACTATGAAG AAAATCCTCTAACATTTTTAGGGTTATTTCGGAATGAACTTCACGCATTTCGCGGGAATCGAACACAGTGAAGGG TATGTCTTTCGACCCCTTTCTTCTAGACTTGTTGCTGACTTTAGAAGATATTTCTGGAAGATTGCAGTGCCGTTC GTCCTCGTTACGATTTTCTACCTGATGTGAGTTCTGATATTCCTCTCGAAAACAGCCGACACTAACCTGCATCTT TAGGCGCGACAAAATACAACGCTACGCTGTCATGCTTGCTCAGCGACGTTTGATTGTTAGCTCGAGGAAGCAGAG ACGAGAGAGGACGAAGAAATAG |