© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3710.t1 |
| Gene name | |
| Location | scaffold_06:516712..517798 |
| Strand | - |
| Gene length (bp) | 1086 |
| Transcript length (bp) | 1086 |
| Coding sequence length (bp) | 1086 |
| Protein length (aa) | 362 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01212 | Beta_elim_lyase | Beta-eliminating lyase | 4.9E-35 | 63 | 305 |
| PF00155 | Aminotran_1_2 | Aminotransferase class I and II | 3.9E-05 | 52 | 187 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016829 | lyase activity | Yes |
| GO:0030170 | pyridoxal phosphate binding | Yes |
| GO:0006520 | cellular amino acid metabolic process | Yes |
| GO:0009058 | biosynthetic process | Yes |
| GO:0019842 | vitamin binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0019752 | carboxylic acid metabolic process | No |
| GO:0043167 | ion binding | No |
| GO:0008150 | biological_process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0006082 | organic acid metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0005488 | binding | No |
| GO:0036094 | small molecule binding | No |
| GO:0003674 | molecular_function | No |
| GO:0044238 | primary metabolic process | No |
| GO:0044281 | small molecule metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0070279 | vitamin B6 binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0043436 | oxoacid metabolic process | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0043168 | anion binding | No |
| GO:0044237 | cellular metabolic process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0009987 | cellular process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 46 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3710.t1 MPSTSLCQDEACPPYSLMDDYSEGAHPQILEALLRTNSTQQVTFGNDEYSICARQLIRNKIGCTEDEAGVFFVPS GTSANLISIASCLRPYEAVITLESGHIACKEAGAIEATGHKLILVPAVDGKMTPTNLQKALQQNQFYPHMAKPRL LYISNASESGTVYTKRELGSLSAICKQSNILLFMDGARIGSAICSKKNDLTLREIFDMTDIFWIGGTKAGALMGE AVVLKKELADGFDFHLKQHGALLAKGRIFGVQFMELFRSDLFFTLATHANEMAQKISNSFKKLGYKLAAETETNQ VFVVIPQELVERLHEKFRFYVWEQLDDGNSVIRLVTSWATDELEIDKFNAWVQQWTVETSS* |
| Coding | >Pro_DTO377G3_2|g3710.t1 ATGCCCTCAACAAGCTTATGCCAAGATGAGGCCTGCCCTCCATACAGCCTTATGGATGATTACAGTGAAGGAGCC CACCCACAAATCCTGGAAGCTCTTTTGCGAACAAACTCCACACAGCAAGTTACATTTGGAAACGATGAATACAGT ATCTGTGCACGACAATTGATCCGGAACAAGATCGGTTGCACCGAGGACGAGGCGGGTGTCTTCTTCGTTCCCAGC GGAACCTCCGCAAACCTCATTTCAATCGCCAGCTGCCTAAGGCCTTATGAAGCTGTTATTACTCTGGAGTCTGGT CACATCGCCTGCAAAGAGGCAGGTGCGATCGAGGCGACCGGCCACAAACTTATCCTCGTGCCTGCAGTCGACGGC AAGATGACGCCCACCAATCTCCAAAAGGCGCTCCAGCAAAATCAATTCTACCCTCACATGGCCAAGCCCCGGCTA CTTTATATCTCCAATGCCTCAGAGAGTGGCACTGTCTACACGAAACGCGAGCTTGGCAGCCTCTCCGCGATTTGC AAGCAATCAAATATCCTGCTCTTCATGGACGGAGCACGAATCGGCTCAGCAATTTGCTCAAAGAAGAACGATCTC ACTCTACGGGAGATCTTCGACATGACCGATATCTTCTGGATTGGTGGCACCAAAGCTGGCGCCCTGATGGGAGAA GCAGTCGTCCTCAAGAAGGAGCTAGCTGATGGCTTCGATTTCCACCTCAAACAGCATGGCGCTTTGCTAGCCAAG GGCCGTATTTTCGGAGTTCAATTCATGGAGCTCTTCCGATCAGACTTATTCTTCACACTAGCCACGCATGCCAAT GAGATGGCCCAGAAGATCTCAAACAGCTTCAAGAAGTTGGGTTATAAGTTGGCTGCGGAGACAGAAACAAACCAG GTGTTTGTTGTCATTCCTCAGGAATTAGTTGAAAGACTGCATGAGAAATTCCGATTCTATGTTTGGGAGCAGCTT GATGATGGGAACTCCGTGATTCGGCTTGTGACCTCCTGGGCCACGGATGAGCTGGAAATTGATAAGTTCAATGCG TGGGTGCAACAGTGGACAGTGGAAACCTCCAGTTGA |
| Transcript | >Pro_DTO377G3_2|g3710.t1 ATGCCCTCAACAAGCTTATGCCAAGATGAGGCCTGCCCTCCATACAGCCTTATGGATGATTACAGTGAAGGAGCC CACCCACAAATCCTGGAAGCTCTTTTGCGAACAAACTCCACACAGCAAGTTACATTTGGAAACGATGAATACAGT ATCTGTGCACGACAATTGATCCGGAACAAGATCGGTTGCACCGAGGACGAGGCGGGTGTCTTCTTCGTTCCCAGC GGAACCTCCGCAAACCTCATTTCAATCGCCAGCTGCCTAAGGCCTTATGAAGCTGTTATTACTCTGGAGTCTGGT CACATCGCCTGCAAAGAGGCAGGTGCGATCGAGGCGACCGGCCACAAACTTATCCTCGTGCCTGCAGTCGACGGC AAGATGACGCCCACCAATCTCCAAAAGGCGCTCCAGCAAAATCAATTCTACCCTCACATGGCCAAGCCCCGGCTA CTTTATATCTCCAATGCCTCAGAGAGTGGCACTGTCTACACGAAACGCGAGCTTGGCAGCCTCTCCGCGATTTGC AAGCAATCAAATATCCTGCTCTTCATGGACGGAGCACGAATCGGCTCAGCAATTTGCTCAAAGAAGAACGATCTC ACTCTACGGGAGATCTTCGACATGACCGATATCTTCTGGATTGGTGGCACCAAAGCTGGCGCCCTGATGGGAGAA GCAGTCGTCCTCAAGAAGGAGCTAGCTGATGGCTTCGATTTCCACCTCAAACAGCATGGCGCTTTGCTAGCCAAG GGCCGTATTTTCGGAGTTCAATTCATGGAGCTCTTCCGATCAGACTTATTCTTCACACTAGCCACGCATGCCAAT GAGATGGCCCAGAAGATCTCAAACAGCTTCAAGAAGTTGGGTTATAAGTTGGCTGCGGAGACAGAAACAAACCAG GTGTTTGTTGTCATTCCTCAGGAATTAGTTGAAAGACTGCATGAGAAATTCCGATTCTATGTTTGGGAGCAGCTT GATGATGGGAACTCCGTGATTCGGCTTGTGACCTCCTGGGCCACGGATGAGCTGGAAATTGATAAGTTCAATGCG TGGGTGCAACAGTGGACAGTGGAAACCTCCAGTTGA |
| Gene | >Pro_DTO377G3_2|g3710.t1 ATGCCCTCAACAAGCTTATGCCAAGATGAGGCCTGCCCTCCATACAGCCTTATGGATGATTACAGTGAAGGAGCC CACCCACAAATCCTGGAAGCTCTTTTGCGAACAAACTCCACACAGCAAGTTACATTTGGAAACGATGAATACAGT ATCTGTGCACGACAATTGATCCGGAACAAGATCGGTTGCACCGAGGACGAGGCGGGTGTCTTCTTCGTTCCCAGC GGAACCTCCGCAAACCTCATTTCAATCGCCAGCTGCCTAAGGCCTTATGAAGCTGTTATTACTCTGGAGTCTGGT CACATCGCCTGCAAAGAGGCAGGTGCGATCGAGGCGACCGGCCACAAACTTATCCTCGTGCCTGCAGTCGACGGC AAGATGACGCCCACCAATCTCCAAAAGGCGCTCCAGCAAAATCAATTCTACCCTCACATGGCCAAGCCCCGGCTA CTTTATATCTCCAATGCCTCAGAGAGTGGCACTGTCTACACGAAACGCGAGCTTGGCAGCCTCTCCGCGATTTGC AAGCAATCAAATATCCTGCTCTTCATGGACGGAGCACGAATCGGCTCAGCAATTTGCTCAAAGAAGAACGATCTC ACTCTACGGGAGATCTTCGACATGACCGATATCTTCTGGATTGGTGGCACCAAAGCTGGCGCCCTGATGGGAGAA GCAGTCGTCCTCAAGAAGGAGCTAGCTGATGGCTTCGATTTCCACCTCAAACAGCATGGCGCTTTGCTAGCCAAG GGCCGTATTTTCGGAGTTCAATTCATGGAGCTCTTCCGATCAGACTTATTCTTCACACTAGCCACGCATGCCAAT GAGATGGCCCAGAAGATCTCAAACAGCTTCAAGAAGTTGGGTTATAAGTTGGCTGCGGAGACAGAAACAAACCAG GTGTTTGTTGTCATTCCTCAGGAATTAGTTGAAAGACTGCATGAGAAATTCCGATTCTATGTTTGGGAGCAGCTT GATGATGGGAACTCCGTGATTCGGCTTGTGACCTCCTGGGCCACGGATGAGCTGGAAATTGATAAGTTCAATGCG TGGGTGCAACAGTGGACAGTGGAAACCTCCAGTTGA |