© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g3709.t1 |
| Gene name | |
| Location | scaffold_06:514647..516401 |
| Strand | + |
| Gene length (bp) | 1754 |
| Transcript length (bp) | 1701 |
| Coding sequence length (bp) | 1701 |
| Protein length (aa) | 567 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 3.1E-38 | 55 | 468 |
| PF00083 | Sugar_tr | Sugar (and other) transporter | 2.3E-09 | 85 | 225 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 70 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 45 | 64 | 19 |
| 2 | 86 | 108 | 22 |
| 3 | 115 | 137 | 22 |
| 4 | 141 | 163 | 22 |
| 5 | 175 | 197 | 22 |
| 6 | 202 | 224 | 22 |
| 7 | 257 | 276 | 19 |
| 8 | 286 | 308 | 22 |
| 9 | 328 | 350 | 22 |
| 10 | 365 | 387 | 22 |
| 11 | 394 | 416 | 22 |
| 12 | 421 | 438 | 17 |
| 13 | 451 | 473 | 22 |
| 14 | 524 | 546 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 4.89 | 1.69 | 8.08 |
| 5d_25C | Five days - 25 degrees Celsius | 4.32 | 1.37 | 7.28 |
| 7d_25C | Seven days - 25 degrees Celsius | 4.09 | 1.15 | 7.02 |
| 10d_25C | Ten days - 25 degrees Celsius | 1.33 | 0.09 | 2.56 |
| 7d_15C | Seven days - 15 degrees Celsius | 3.60 | 0.84 | 6.36 |
| 7d_30C | Seven days - 30 degrees Celsius | 5.92 | 2.02 | 9.82 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.812316 | no |
| 3d_25C | 7d_25C | 0.719252 | no |
| 3d_25C | 7d_15C | 0.511237 | no |
| 3d_25C | 7d_30C | 0.680526 | no |
| 3d_25C | 10d_25C | 0.005626 | yes |
| 5d_25C | 7d_25C | 0.926684 | no |
| 5d_25C | 7d_15C | 0.735085 | no |
| 5d_25C | 7d_30C | 0.468249 | no |
| 5d_25C | 10d_25C | 0.012303 | yes |
| 7d_25C | 7d_15C | 0.829916 | no |
| 7d_25C | 7d_30C | 0.390463 | no |
| 7d_25C | 10d_25C | 0.015558 | yes |
| 7d_15C | 7d_30C | 0.250316 | no |
| 7d_15C | 10d_25C | 0.036293 | yes |
| 7d_30C | 10d_25C | 0.002297 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3709.t1 MVINTSNDGHPADPEKQSKTSITVDREEYVPEADQSSAAICTSSWIAISLVVFSLALSMFLLGLDSTIVSTAIPE ITNRFHALDDVGWYASAYMLTFCAIQLIWGKLYSFWSAKSVYLAALFIFEVGSLLCGVAPSSTAFIVGRAIAGAG SGGVSAGSFVLVAHRVPLRHRASMVGIVSAAFGVGSIAGPLVGGAFTTNTQLTWRWCFYINLPLGLFVALVIFLC IRPIKNAPNADIDQPQLFSQSSMKEKIRQMDLPGVSLLLPGVICLLLALQWGGTKYAWSSGRIITLLVLGPVLLL AFASIQVFTKVQSHVTVPMRVVQNRNIWGSSMYGSCIVAAFFTLMYYLPIWFQAIKGASPVRSGIMTLPTIISFV IFSTSGGALTSLAGCHAPFACLSVILIATGSGLLSTLEVHTGAGKWIGYQILFGAGSGLGIQTALTTAQALPVAD IAIGTAIIMFCQNLMGSIMVSVAQNVFTNELVRYLAEEVDGIDAQAVLSMGATEISDHIPSDQYGTVLKAYNKAL THTFYVAVALSSAAVMGAVCLRWKPAMRSLDETYAPRHRTA* |
| Coding | >Pro_DTO377G3_2|g3709.t1 ATGGTCATCAACACCTCCAATGATGGTCATCCAGCAGACCCCGAAAAGCAGAGCAAGACATCAATTACAGTCGAT AGGGAAGAATATGTTCCTGAAGCAGACCAATCCAGTGCCGCAATTTGCACTTCCAGCTGGATCGCAATATCACTG GTGGTGTTCTCTCTCGCACTGTCCATGTTTCTACTCGGCTTGGATAGTACAATTGTGTCGACGGCAATACCTGAA ATCACCAACCGGTTTCATGCTCTAGACGATGTGGGTTGGTATGCAAGCGCTTACATGTTGACCTTTTGCGCAATC CAACTCATCTGGGGCAAGCTGTACTCATTCTGGTCCGCCAAGTCGGTTTATCTGGCTGCCTTGTTTATCTTTGAA GTGGGATCATTGCTTTGCGGCGTCGCTCCATCCTCAACCGCATTCATTGTCGGTCGCGCAATTGCCGGTGCTGGT AGTGGAGGTGTTAGCGCAGGATCTTTCGTGCTGGTTGCCCACCGAGTCCCTCTTAGACATCGCGCTTCCATGGTG GGGATTGTCAGCGCGGCATTTGGCGTTGGCTCCATCGCAGGTCCTCTCGTAGGCGGCGCCTTCACAACTAATACG CAATTGACATGGCGGTGGTGCTTCTATATCAACCTTCCGTTGGGGCTTTTCGTGGCCTTGGTGATATTCCTTTGT ATTCGACCTATAAAGAACGCCCCCAATGCCGATATTGACCAACCGCAACTATTCTCTCAGTCGTCCATGAAAGAA AAGATTCGCCAGATGGACCTTCCAGGGGTATCATTACTTCTCCCTGGTGTTATATGCTTGCTTCTAGCTCTACAG TGGGGTGGGACAAAATACGCCTGGTCGAGCGGACGTATCATTACTCTCCTAGTTCTTGGACCAGTTCTCCTTCTC GCCTTCGCTTCTATCCAAGTGTTCACCAAAGTGCAGTCCCATGTCACAGTCCCCATGCGGGTGGTCCAAAATAGG AATATCTGGGGCTCATCAATGTACGGATCGTGTATCGTCGCTGCGTTTTTCACACTGATGTACTACCTCCCCATC TGGTTCCAAGCAATCAAAGGTGCATCCCCGGTACGCTCGGGTATCATGACATTGCCCACAATTATTAGCTTCGTG ATATTTTCCACCTCGGGCGGTGCGCTCACCTCTCTGGCGGGCTGTCACGCTCCCTTCGCCTGCCTTTCTGTTATC TTGATCGCCACAGGATCAGGTCTCCTAAGTACACTGGAGGTACATACAGGGGCAGGTAAATGGATAGGATACCAG ATCCTCTTCGGTGCGGGGTCGGGATTAGGAATCCAAACTGCTCTGACAACTGCCCAGGCTCTACCCGTCGCGGAT ATTGCCATTGGCACAGCGATCATCATGTTCTGCCAGAACCTTATGGGTAGCATCATGGTTTCAGTTGCTCAGAAT GTGTTCACCAATGAGTTGGTGAGGTATCTGGCGGAAGAGGTCGATGGAATAGATGCTCAGGCCGTCTTGAGCATG GGTGCAACAGAAATAAGTGACCATATACCCTCGGATCAATATGGCACGGTGCTGAAAGCATACAATAAGGCATTG ACCCATACTTTCTACGTGGCAGTGGCCCTGTCTTCTGCAGCCGTGATGGGCGCTGTATGTCTGCGCTGGAAACCA GCCATGCGTAGCCTGGATGAAACATATGCGCCCCGGCACCGAACAGCATAG |
| Transcript | >Pro_DTO377G3_2|g3709.t1 ATGGTCATCAACACCTCCAATGATGGTCATCCAGCAGACCCCGAAAAGCAGAGCAAGACATCAATTACAGTCGAT AGGGAAGAATATGTTCCTGAAGCAGACCAATCCAGTGCCGCAATTTGCACTTCCAGCTGGATCGCAATATCACTG GTGGTGTTCTCTCTCGCACTGTCCATGTTTCTACTCGGCTTGGATAGTACAATTGTGTCGACGGCAATACCTGAA ATCACCAACCGGTTTCATGCTCTAGACGATGTGGGTTGGTATGCAAGCGCTTACATGTTGACCTTTTGCGCAATC CAACTCATCTGGGGCAAGCTGTACTCATTCTGGTCCGCCAAGTCGGTTTATCTGGCTGCCTTGTTTATCTTTGAA GTGGGATCATTGCTTTGCGGCGTCGCTCCATCCTCAACCGCATTCATTGTCGGTCGCGCAATTGCCGGTGCTGGT AGTGGAGGTGTTAGCGCAGGATCTTTCGTGCTGGTTGCCCACCGAGTCCCTCTTAGACATCGCGCTTCCATGGTG GGGATTGTCAGCGCGGCATTTGGCGTTGGCTCCATCGCAGGTCCTCTCGTAGGCGGCGCCTTCACAACTAATACG CAATTGACATGGCGGTGGTGCTTCTATATCAACCTTCCGTTGGGGCTTTTCGTGGCCTTGGTGATATTCCTTTGT ATTCGACCTATAAAGAACGCCCCCAATGCCGATATTGACCAACCGCAACTATTCTCTCAGTCGTCCATGAAAGAA AAGATTCGCCAGATGGACCTTCCAGGGGTATCATTACTTCTCCCTGGTGTTATATGCTTGCTTCTAGCTCTACAG TGGGGTGGGACAAAATACGCCTGGTCGAGCGGACGTATCATTACTCTCCTAGTTCTTGGACCAGTTCTCCTTCTC GCCTTCGCTTCTATCCAAGTGTTCACCAAAGTGCAGTCCCATGTCACAGTCCCCATGCGGGTGGTCCAAAATAGG AATATCTGGGGCTCATCAATGTACGGATCGTGTATCGTCGCTGCGTTTTTCACACTGATGTACTACCTCCCCATC TGGTTCCAAGCAATCAAAGGTGCATCCCCGGTACGCTCGGGTATCATGACATTGCCCACAATTATTAGCTTCGTG ATATTTTCCACCTCGGGCGGTGCGCTCACCTCTCTGGCGGGCTGTCACGCTCCCTTCGCCTGCCTTTCTGTTATC TTGATCGCCACAGGATCAGGTCTCCTAAGTACACTGGAGGTACATACAGGGGCAGGTAAATGGATAGGATACCAG ATCCTCTTCGGTGCGGGGTCGGGATTAGGAATCCAAACTGCTCTGACAACTGCCCAGGCTCTACCCGTCGCGGAT ATTGCCATTGGCACAGCGATCATCATGTTCTGCCAGAACCTTATGGGTAGCATCATGGTTTCAGTTGCTCAGAAT GTGTTCACCAATGAGTTGGTGAGGTATCTGGCGGAAGAGGTCGATGGAATAGATGCTCAGGCCGTCTTGAGCATG GGTGCAACAGAAATAAGTGACCATATACCCTCGGATCAATATGGCACGGTGCTGAAAGCATACAATAAGGCATTG ACCCATACTTTCTACGTGGCAGTGGCCCTGTCTTCTGCAGCCGTGATGGGCGCTGTATGTCTGCGCTGGAAACCA GCCATGCGTAGCCTGGATGAAACATATGCGCCCCGGCACCGAACAGCATAG |
| Gene | >Pro_DTO377G3_2|g3709.t1 ATGGTCATCAACACCTCCAATGATGGTCATCCAGCAGACCCCGAAAAGCAGAGCAAGACATCAATTACAGTCGAT AGGGAAGAATATGTTCCTGAAGCAGACCAATCCAGTGCCGCAATTTGCACTTCCAGCTGGATCGCAATATCACTG GTGGTGTTCTCTCTCGCACTGTCCATGTTTCTACTCGGCTTGGATAGTACAATTGTGTCGACGGCAATACCTGAA ATCACCAACCGGTTTCATGCTCTAGACGATGTGGGTTGGTATGCAAGCGCTTACATGTTGACCTTTTGCGCAATC CAACTCATCTGGGGCAAGCTGTACTCATTCTGGTCCGCCAAGTCGGTTTATCTGGCTGCCTTGTTTATCTTTGAA GTGGGATCATTGCTTTGCGGCGTCGCTCCATCCTCAACCGCATTCATTGTCGGTCGCGCAATTGCCGGTGCTGGT AGTGGAGGTGTTAGCGCAGGATCTTTCGTGCTGGTTGCCCACCGAGTCCCTCTTAGACATCGCGCTTCCATGGTG GGGATTGTCAGCGCGGCATTTGGCGTTGGCTCCATCGCAGGTCCTCTCGTAGGCGGCGCCTTCACAACTAATACG CAATTGACATGGCGGTGGTGCTTCTATATCAACCTTCCGTTGGGGCTTTTCGTGGCCTTGGTGATATTCCTTTGT ATTCGACCTATAAAGAACGCCCCCAATGCCGATATTGACCAACCGCAACTATTCTCTCAGTCGTCCATGAAAGAA AAGATTCGCCAGATGGACCTTCCAGGGGTATCATTACTTCTCCCTGGTGTTATATGCTTGCTTCTAGCTCTACAG TGGGGTGGGACAAAATACGCCTGGTCGAGCGGACGTATCATTACTCTCCTAGTTCTTGGACCAGTTCTCCTTCTC GCCTTCGCTTCTATCCAAGTGTTCACCAAAGTGCAGTCCCATGTCACAGTCCCCATGCGGGTGGTCCAAAATAGG AATATCTGGGGCTCATCAATGTACGGATCGTGTATCGTCGCTGCGTTTTTCACACTGATGTACTACGTAAGTATC GCCAATTCTTCATTGACCCGCGCCGCTAACGATGCGAACAATAGCTCCCCATCTGGTTCCAAGCAATCAAAGGTG CATCCCCGGTACGCTCGGGTATCATGACATTGCCCACAATTATTAGCTTCGTGATATTTTCCACCTCGGGCGGTG CGCTCACCTCTCTGGCGGGCTGTCACGCTCCCTTCGCCTGCCTTTCTGTTATCTTGATCGCCACAGGATCAGGTC TCCTAAGTACACTGGAGGTACATACAGGGGCAGGTAAATGGATAGGATACCAGATCCTCTTCGGTGCGGGGTCGG GATTAGGAATCCAAACTGCTCTGACAACTGCCCAGGCTCTACCCGTCGCGGATATTGCCATTGGCACAGCGATCA TCATGTTCTGCCAGAACCTTATGGGTAGCATCATGGTTTCAGTTGCTCAGAATGTGTTCACCAATGAGTTGGTGA GGTATCTGGCGGAAGAGGTCGATGGAATAGATGCTCAGGCCGTCTTGAGCATGGGTGCAACAGAAATAAGTGACC ATATACCCTCGGATCAATATGGCACGGTGCTGAAAGCATACAATAAGGCATTGACCCATACTTTCTACGTGGCAG TGGCCCTGTCTTCTGCAGCCGTGATGGGCGCTGTATGTCTGCGCTGGAAACCAGCCATGCGTAGCCTGGATGAAA CATATGCGCCCCGGCACCGAACAGCATAG |