© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3663.t1 |
| Gene name | |
| Location | scaffold_06:359639..361326 |
| Strand | + |
| Gene length (bp) | 1687 |
| Transcript length (bp) | 1437 |
| Coding sequence length (bp) | 1437 |
| Protein length (aa) | 479 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 1.3E-31 | 62 | 425 |
| PF07690 | MFS_1 | Major Facilitator Superfamily | 1.2E-10 | 294 | 477 |
| PF12832 | MFS_1_like | MFS_1 like family | 3.2E-06 | 311 | 372 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 33 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 58 | 80 | 22 |
| 2 | 95 | 117 | 22 |
| 3 | 122 | 139 | 17 |
| 4 | 149 | 171 | 22 |
| 5 | 184 | 203 | 19 |
| 6 | 218 | 240 | 22 |
| 7 | 286 | 305 | 19 |
| 8 | 325 | 347 | 22 |
| 9 | 354 | 376 | 22 |
| 10 | 380 | 402 | 22 |
| 11 | 414 | 436 | 22 |
| 12 | 446 | 468 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 6.13 | 2.13 | 10.13 |
| 5d_25C | Five days - 25 degrees Celsius | 13.47 | 6.00 | 20.95 |
| 7d_25C | Seven days - 25 degrees Celsius | 15.16 | 6.99 | 23.32 |
| 10d_25C | Ten days - 25 degrees Celsius | 33.51 | 18.86 | 48.16 |
| 7d_15C | Seven days - 15 degrees Celsius | 9.40 | 3.66 | 15.14 |
| 7d_30C | Seven days - 30 degrees Celsius | 23.42 | 12.16 | 34.69 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.013211 | yes |
| 3d_25C | 7d_25C | 0.005235 | yes |
| 3d_25C | 7d_15C | 0.253043 | no |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.778527 | no |
| 5d_25C | 7d_15C | 0.316235 | no |
| 5d_25C | 7d_30C | 0.053498 | no |
| 5d_25C | 10d_25C | 0.001804 | yes |
| 7d_25C | 7d_15C | 0.146306 | no |
| 7d_25C | 7d_30C | 0.124534 | no |
| 7d_25C | 10d_25C | 0.001278 | yes |
| 7d_15C | 7d_30C | 0.001804 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.158075 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3663.t1 MSSLPIEKAPQTMGAEEIPTKTEHPSGSEPARQKWHEWFAPTDTPAERRLILKLDGLIIVFVFLAYWAKVLDSSA TSTAYVSGMKEDLKLYGNQLNYLQTVYMVGFITMQIPLTLLMTRCPVNYFLPAADLFWGVFTLAQYKASNVTQLY ALRFFVGALGGFFFPAVQWYLGSWYKRSELSRRGAIFFIASQVGSMSSGYIQAGAYARLDGRYGIEGWRWLYIIC FACTIPIAFLGLCLLPSTPDKCNSRFLSADEVRLAQERMASENREARQPFTKSRVLQILKGWRLWVLVGFAFFFS QADGVSSNSGLPIWLKEEGYSVESINTITTVSPAVTIVASVICGVLSDVYDAKASLIAATALLNIFACIVLAIWN VPIGLKFFAFFLSGTADGIAAIIYAWANEICAHSAEERAIVISAMNTIGNTFGAWIPLFVWKTVDAPRYLIGYNW TIALDVCMLAMLAVLYQFWAREKKRSHA* |
| Coding | >Pro_DTO377G3_2|g3663.t1 ATGTCTTCTCTACCCATTGAGAAAGCCCCGCAGACAATGGGAGCCGAGGAAATCCCCACGAAAACAGAGCATCCG TCCGGTTCTGAGCCTGCACGCCAGAAATGGCATGAGTGGTTTGCGCCGACGGATACCCCTGCCGAGCGGCGGCTG ATCCTCAAGCTCGATGGATTGATCATCGTCTTCGTATTCCTGGCGTACTGGGCTAAGGTCTTGGATTCATCGGCC ACGAGTACAGCCTATGTATCTGGCATGAAGGAGGATTTGAAGCTTTATGGGAACCAATTAAATTATCTACAGACG GTTTACATGGTTGGGTTCATCACGATGCAGATTCCTTTGACTTTGTTGATGACTCGCTGTCCCGTGAACTATTTC CTGCCTGCCGCCGATCTATTCTGGGGTGTCTTCACTCTGGCACAGTACAAGGCTAGCAATGTCACCCAGCTCTAC GCTCTCCGCTTTTTCGTTGGTGCCCTCGGGGGCTTCTTCTTCCCTGCCGTGCAATGGTACCTGGGCAGTTGGTAT AAGCGCTCAGAACTGTCCCGCCGAGGCGCAATCTTTTTCATTGCCTCCCAAGTCGGCAGCATGAGTTCGGGATAC ATTCAAGCGGGAGCTTATGCCAGGCTTGACGGTCGGTACGGGATTGAAGGGTGGAGATGGCTATACATAATTTGC TTTGCATGCACTATTCCTATCGCCTTCCTAGGCCTATGCCTCCTCCCCAGCACACCAGACAAATGCAACTCGCGT TTCCTCAGCGCCGACGAAGTCCGCCTCGCGCAAGAGCGCATGGCATCCGAGAACCGCGAAGCCCGTCAACCATTC ACCAAGTCGAGGGTTCTCCAGATCCTGAAAGGCTGGCGGCTGTGGGTTCTAGTCGGATTTGCATTCTTCTTCTCG CAGGCCGATGGTGTATCCTCGAACAGCGGCTTGCCAATCTGGCTCAAGGAGGAGGGATACTCGGTCGAGAGCATC AACACGATCACGACAGTCTCGCCGGCGGTCACTATTGTGGCATCTGTGATCTGTGGAGTTCTCTCTGATGTGTAC GATGCGAAAGCTAGCTTGATTGCTGCCACTGCTTTGCTGAATATCTTTGCTTGTATTGTGCTAGCGATCTGGAAT GTCCCTATTGGACTGAAGTTCTTTGCGTTCTTCCTGTCAGGCACGGCGGATGGGATTGCAGCTATTATCTATGCC TGGGCAAATGAGATCTGTGCCCATAGTGCCGAGGAGCGTGCTATTGTCATCAGTGCCATGAATACTATTGGTAAT ACCTTTGGGGCTTGGATTCCGCTCTTTGTATGGAAGACTGTTGATGCTCCAAGGTACCTTATTGGATATAACTGG ACTATTGCCCTTGATGTGTGCATGCTAGCTATGCTGGCTGTTCTATATCAGTTCTGGGCCCGCGAAAAGAAGCGA TCCCATGCATAG |
| Transcript | >Pro_DTO377G3_2|g3663.t1 ATGTCTTCTCTACCCATTGAGAAAGCCCCGCAGACAATGGGAGCCGAGGAAATCCCCACGAAAACAGAGCATCCG TCCGGTTCTGAGCCTGCACGCCAGAAATGGCATGAGTGGTTTGCGCCGACGGATACCCCTGCCGAGCGGCGGCTG ATCCTCAAGCTCGATGGATTGATCATCGTCTTCGTATTCCTGGCGTACTGGGCTAAGGTCTTGGATTCATCGGCC ACGAGTACAGCCTATGTATCTGGCATGAAGGAGGATTTGAAGCTTTATGGGAACCAATTAAATTATCTACAGACG GTTTACATGGTTGGGTTCATCACGATGCAGATTCCTTTGACTTTGTTGATGACTCGCTGTCCCGTGAACTATTTC CTGCCTGCCGCCGATCTATTCTGGGGTGTCTTCACTCTGGCACAGTACAAGGCTAGCAATGTCACCCAGCTCTAC GCTCTCCGCTTTTTCGTTGGTGCCCTCGGGGGCTTCTTCTTCCCTGCCGTGCAATGGTACCTGGGCAGTTGGTAT AAGCGCTCAGAACTGTCCCGCCGAGGCGCAATCTTTTTCATTGCCTCCCAAGTCGGCAGCATGAGTTCGGGATAC ATTCAAGCGGGAGCTTATGCCAGGCTTGACGGTCGGTACGGGATTGAAGGGTGGAGATGGCTATACATAATTTGC TTTGCATGCACTATTCCTATCGCCTTCCTAGGCCTATGCCTCCTCCCCAGCACACCAGACAAATGCAACTCGCGT TTCCTCAGCGCCGACGAAGTCCGCCTCGCGCAAGAGCGCATGGCATCCGAGAACCGCGAAGCCCGTCAACCATTC ACCAAGTCGAGGGTTCTCCAGATCCTGAAAGGCTGGCGGCTGTGGGTTCTAGTCGGATTTGCATTCTTCTTCTCG CAGGCCGATGGTGTATCCTCGAACAGCGGCTTGCCAATCTGGCTCAAGGAGGAGGGATACTCGGTCGAGAGCATC AACACGATCACGACAGTCTCGCCGGCGGTCACTATTGTGGCATCTGTGATCTGTGGAGTTCTCTCTGATGTGTAC GATGCGAAAGCTAGCTTGATTGCTGCCACTGCTTTGCTGAATATCTTTGCTTGTATTGTGCTAGCGATCTGGAAT GTCCCTATTGGACTGAAGTTCTTTGCGTTCTTCCTGTCAGGCACGGCGGATGGGATTGCAGCTATTATCTATGCC TGGGCAAATGAGATCTGTGCCCATAGTGCCGAGGAGCGTGCTATTGTCATCAGTGCCATGAATACTATTGGTAAT ACCTTTGGGGCTTGGATTCCGCTCTTTGTATGGAAGACTGTTGATGCTCCAAGGTACCTTATTGGATATAACTGG ACTATTGCCCTTGATGTGTGCATGCTAGCTATGCTGGCTGTTCTATATCAGTTCTGGGCCCGCGAAAAGAAGCGA TCCCATGCATAG |
| Gene | >Pro_DTO377G3_2|g3663.t1 ATGTCTTCTCTACCCATTGAGAAAGCCCCGCAGACAATGGGAGCCGAGGAAATCCCCACGAAAACAGAGCATCCG TCCGGTTCTGAGCCTGCACGCCAGAAATGGCATGAGTGGTTTGCGCCGACGGATACCCCTGCCGAGCGGCGGCTG ATCCTCAAGCTCGATGGATTGATCATCGTCTTCGTATTCCTGGCGTACTGGGCTAAGGTCTTGGATTCATCGGCC ACGAGTACAGCCTATGTATCTGGCATGAAGGAGGATTTGAAGCTTTATGGGAACCAATTAAATTATCTACAGACG GTTTACATGTATGTTTATACGATGGGTTGGTGGTGGCGGGGAGTGTGAATTGAGGTTTGATGCTGACTTGGTATA GGGTTGGGTTCATCACGATGCAGATTCCTTTGACTTTGTTGGTTCGTTGTCACTTAGAATCTACCCCATGGAGAC AATAATTTACTGACTGTCTTTTATAGATGACTCGCTGTCCCGTGAACTATTTCCTGCCTGCCGCCGATCTATTCT GGGGTGTCTTCACTCTGGCACAGTACAAGGCTAGCAATGTCACCCAGCTCTACGCTCTCCGCTTTTTCGTTGGTG CCCTCGGGGGCTTCTTCTTCCCTGCCGTGCAATGGTACCTGGGCAGTTGGTATAAGCGCTCAGAACTGTCCCGCC GAGGCGCAATCTTTTTCATTGCCTCCCAAGTCGGCAGCATGAGTTCGGGATACATTCAAGCGGGAGCTTATGCCA GGCTTGACGGTCGGTACGGGATTGAAGGGTGGAGATGGCTATACATAATTTGTGAGTGTATCCGAAGTGTCTCGC AAAAGGAAGGAACAAAAGAGACACAGACTAATGATATCAGGCTTTGCATGCACTATTCCTATCGCCTTCCTAGGC CTATGCCTCCTCCCCAGCACACCAGACAAATGCAACTCGCGTTTCCTCAGCGCCGACGAAGTCCGCCTCGCGCAA GAGCGCATGGCATCCGAGAACCGCGAAGCCCGTCAACCATTCACCAAGTCGAGGGTTCTCCAGATCCTGAAAGGC TGGCGGCTGTGGGTTCTAGTCGGATTTGCATTCTTCTTCTCGCAGGCCGATGGTGTATCCTCGAACAGCGGCTTG CCAATCTGGCTCAAGGAGGAGGGATACTCGGTCGAGAGCATCAACACGATCACGACAGTCTCGCCGGCGGTCACT ATTGTGGCATCTGTGATCTGTGGAGTTCTCTCTGATGTGTACGATGCGAAAGCTAGCTTGATTGCTGCCACTGCT TTGCTGAATATCTTTGCTTGTATTGTGCTAGCGATCTGGAATGTCCCTATTGGACTGAAGTTCTTTGCGTTCTTC CTGTCAGGCACGGCGGATGGGATTGCAGCTATTATCTATGCCTGGGCAAATGAGATCTGTGCCCATAGTGCCGAG GAGCGTGCTATTGTCATCAGTGCCATGAATACTATTGGTAATACCTTTGGGGCTTGGATTCCGCTCTTGTGAGTG TTGGTGCAACCTGCTGATCCTGAACTTTATACTAATCTTTTTCTTATCTAGTGTATGGAAGACTGTTGATGCTCC AAGGTACCTTATTGGATATAACTGGACTATTGCCCTTGATGTGTGCATGCTAGCTATGCTGGCTGTTCTATATCA GTTCTGGGCCCGCGAAAAGAAGCGATCCCATGCATAG |