© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3644.t1 |
| Gene name | |
| Location | scaffold_06:297198..298456 |
| Strand | + |
| Gene length (bp) | 1258 |
| Transcript length (bp) | 1158 |
| Coding sequence length (bp) | 1158 |
| Protein length (aa) | 386 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF12697 | Abhydrolase_6 | Alpha/beta hydrolase family | 1.1E-07 | 167 | 376 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 20 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 69.75 | 41.62 | 97.89 |
| 5d_25C | Five days - 25 degrees Celsius | 62.37 | 36.83 | 87.91 |
| 7d_25C | Seven days - 25 degrees Celsius | 62.08 | 36.75 | 87.42 |
| 10d_25C | Ten days - 25 degrees Celsius | 49.05 | 27.90 | 70.19 |
| 7d_15C | Seven days - 15 degrees Celsius | 47.28 | 27.00 | 67.55 |
| 7d_30C | Seven days - 30 degrees Celsius | 62.83 | 37.20 | 88.46 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.708897 | no |
| 3d_25C | 7d_25C | 0.690480 | no |
| 3d_25C | 7d_15C | 0.089205 | no |
| 3d_25C | 7d_30C | 0.728248 | no |
| 3d_25C | 10d_25C | 0.131376 | no |
| 5d_25C | 7d_25C | 0.989967 | no |
| 5d_25C | 7d_15C | 0.265251 | no |
| 5d_25C | 7d_30C | 0.984770 | no |
| 5d_25C | 10d_25C | 0.355258 | no |
| 7d_25C | 7d_15C | 0.274368 | no |
| 7d_25C | 7d_30C | 0.974413 | no |
| 7d_25C | 10d_25C | 0.365397 | no |
| 7d_15C | 7d_30C | 0.258848 | no |
| 7d_15C | 10d_25C | 0.921111 | no |
| 7d_30C | 10d_25C | 0.340892 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3644.t1 MLSFRTLASLTYLTHVAFASLGGNVQAHGSQLRDIVPRREVLYVGGRYTNITENATNSTSMVMIGQIYVEKLSPQ SAPVNPPLPIIFIAGAAQTGTNFLDTPDGRPGWASYFISKGHTVYLSDQPARGRSFWSPGQGSIGYIGSPDSVSD IFTDVANNDNQWPQAKLHTQWPGTGRIGDSTFDAFYRSQMQFQTDRFISEEQNAQAYSALVDLVGDCYIISHSQA GAYGWRVGDMRPDLVKGIVQLEPSGPPFTLRPPFGNDPAFAFGLTDLAIGYEPSAGENAENIETTIEPAIDADHD QCIMQKSPAKQLTNLGKIPELVVTGEASFHAPYDYCTVKYLEQAGVDVEYADLGKEGIHGNGHMFFMEKNNLEIA DRVYKWLEKH* |
| Coding | >Pro_DTO377G3_2|g3644.t1 ATGTTGAGCTTTCGCACCTTGGCTTCCCTCACATATTTGACGCATGTCGCTTTCGCTTCTCTAGGAGGCAATGTG CAAGCTCATGGCTCCCAGCTTAGGGACATTGTTCCTAGGCGCGAGGTTCTCTACGTTGGCGGACGATACACGAAC ATCACAGAAAATGCAACCAATTCTACATCAATGGTTATGATAGGGCAAATTTACGTCGAGAAGCTCTCCCCTCAG TCAGCCCCGGTGAACCCACCACTTCCCATTATTTTCATTGCAGGCGCGGCTCAGACCGGCACCAATTTTCTTGAT ACTCCAGACGGACGGCCAGGATGGGCATCCTATTTCATCTCCAAGGGTCACACAGTCTACCTCTCAGATCAGCCC GCACGCGGTCGCTCCTTCTGGTCACCCGGACAGGGAAGTATTGGGTACATCGGCTCCCCCGATTCGGTCTCTGAT ATTTTCACCGACGTAGCAAACAACGACAACCAATGGCCACAGGCGAAGCTTCACACGCAATGGCCTGGCACCGGT CGCATTGGCGACTCAACTTTCGACGCTTTCTACAGGAGCCAGATGCAATTCCAGACCGACCGCTTCATAAGCGAG GAACAAAATGCGCAGGCGTATTCAGCTCTAGTCGACCTCGTCGGTGACTGTTATATCATCAGTCATTCGCAGGCG GGTGCATATGGCTGGAGGGTCGGAGACATGCGCCCAGACCTAGTCAAAGGTATTGTCCAACTCGAGCCGTCTGGT CCGCCGTTCACGCTCCGCCCGCCGTTTGGAAATGACCCAGCTTTCGCTTTCGGTCTCACCGACCTCGCAATCGGA TACGAACCGTCTGCAGGCGAGAATGCCGAAAATATTGAGACAACCATCGAGCCAGCAATTGACGCTGATCACGAC CAATGCATCATGCAGAAATCCCCAGCGAAACAGTTGACAAACCTGGGCAAAATCCCAGAACTTGTTGTTACAGGC GAAGCATCGTTCCACGCGCCATACGATTACTGCACCGTCAAGTATCTGGAGCAAGCTGGAGTAGACGTTGAGTAC GCAGATCTAGGCAAAGAGGGTATTCATGGCAACGGACACATGTTCTTCATGGAGAAGAACAACCTTGAGATCGCA GACCGGGTGTACAAGTGGCTGGAAAAGCACTAA |
| Transcript | >Pro_DTO377G3_2|g3644.t1 ATGTTGAGCTTTCGCACCTTGGCTTCCCTCACATATTTGACGCATGTCGCTTTCGCTTCTCTAGGAGGCAATGTG CAAGCTCATGGCTCCCAGCTTAGGGACATTGTTCCTAGGCGCGAGGTTCTCTACGTTGGCGGACGATACACGAAC ATCACAGAAAATGCAACCAATTCTACATCAATGGTTATGATAGGGCAAATTTACGTCGAGAAGCTCTCCCCTCAG TCAGCCCCGGTGAACCCACCACTTCCCATTATTTTCATTGCAGGCGCGGCTCAGACCGGCACCAATTTTCTTGAT ACTCCAGACGGACGGCCAGGATGGGCATCCTATTTCATCTCCAAGGGTCACACAGTCTACCTCTCAGATCAGCCC GCACGCGGTCGCTCCTTCTGGTCACCCGGACAGGGAAGTATTGGGTACATCGGCTCCCCCGATTCGGTCTCTGAT ATTTTCACCGACGTAGCAAACAACGACAACCAATGGCCACAGGCGAAGCTTCACACGCAATGGCCTGGCACCGGT CGCATTGGCGACTCAACTTTCGACGCTTTCTACAGGAGCCAGATGCAATTCCAGACCGACCGCTTCATAAGCGAG GAACAAAATGCGCAGGCGTATTCAGCTCTAGTCGACCTCGTCGGTGACTGTTATATCATCAGTCATTCGCAGGCG GGTGCATATGGCTGGAGGGTCGGAGACATGCGCCCAGACCTAGTCAAAGGTATTGTCCAACTCGAGCCGTCTGGT CCGCCGTTCACGCTCCGCCCGCCGTTTGGAAATGACCCAGCTTTCGCTTTCGGTCTCACCGACCTCGCAATCGGA TACGAACCGTCTGCAGGCGAGAATGCCGAAAATATTGAGACAACCATCGAGCCAGCAATTGACGCTGATCACGAC CAATGCATCATGCAGAAATCCCCAGCGAAACAGTTGACAAACCTGGGCAAAATCCCAGAACTTGTTGTTACAGGC GAAGCATCGTTCCACGCGCCATACGATTACTGCACCGTCAAGTATCTGGAGCAAGCTGGAGTAGACGTTGAGTAC GCAGATCTAGGCAAAGAGGGTATTCATGGCAACGGACACATGTTCTTCATGGAGAAGAACAACCTTGAGATCGCA GACCGGGTGTACAAGTGGCTGGAAAAGCACTAA |
| Gene | >Pro_DTO377G3_2|g3644.t1 ATGTTGAGCTTTCGCACCTTGGCTTCCCTCACATATTTGACGCATGTCGCTTTCGCTTCTCTAGGAGGCAATGTG CAAGCTCATGGCTCCCAGCTTAGGGACATTGTTCCTAGGCGCGAGGTTCTCTACGTTGGCGGACGATACACGAAC ATCACAGCAAGTCTTGATTCCCACCAATTCGACGCGTATCTAAGTCGTCAAACAGGAAAATGCAACCAATTCTAC ATCAATGGTTATGATAGGGCAAATTTACGTCGAGAAGCTCTCCCCTCAGTCAGCCCCGGTGAACCCACCACTTCC CATTATTTTCATTGCAGGCGCGGCTCAGACCGGCACCAATTTTCTTGATACTCCAGACGGACGGCCAGGATGGGC ATCCTATTTCATCTCCAAGGGTCACACAGTCTACCTCTCAGATCAGCCCGCACGCGGTCGCTCCTTCTGGTCACC CGGACAGGGAAGTATTGGGTACATCGGCTCCCCCGATTCGGTCTCTGATATTTTCACCGACGTAGCAAACAACGA CAACCAATGGCCACAGGCGAAGCTTCACACGCAATGGCCTGGCACCGGTCGCATTGGCGACTCAACTTTCGACGC TTTCTACAGGAGCCAGATGCAATTCCAGACCGACCGCTTCATAAGCGAGGAACAAAATGCGCAGGCGTATTCAGC TCTAGTCGACCTCGTCGGTGACTGTTATATCATCAGTCATTCGCAGGCGGGTGCATATGGTAATTTCAGCCAAGC ACTATGACTCACTGAGGTGGTTAACAATTGAATAGGCTGGAGGGTCGGAGACATGCGCCCAGACCTAGTCAAAGG TATTGTCCAACTCGAGCCGTCTGGTCCGCCGTTCACGCTCCGCCCGCCGTTTGGAAATGACCCAGCTTTCGCTTT CGGTCTCACCGACCTCGCAATCGGATACGAACCGTCTGCAGGCGAGAATGCCGAAAATATTGAGACAACCATCGA GCCAGCAATTGACGCTGATCACGACCAATGCATCATGCAGAAATCCCCAGCGAAACAGTTGACAAACCTGGGCAA AATCCCAGAACTTGTTGTTACAGGCGAAGCATCGTTCCACGCGCCATACGATTACTGCACCGTCAAGTATCTGGA GCAAGCTGGAGTAGACGTTGAGTACGCAGATCTAGGCAAAGAGGGTATTCATGGCAACGGACACATGTTCTTCAT GGAGAAGAACAACCTTGAGATCGCAGACCGGGTGTACAAGTGGCTGGAAAAGCACTAA |