© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g362.t1 |
| Gene name | |
| Location | scaffold_01:917557..919599 |
| Strand | + |
| Gene length (bp) | 2042 |
| Transcript length (bp) | 1926 |
| Coding sequence length (bp) | 1926 |
| Protein length (aa) | 642 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00004 | AAA | ATPase family associated with various cellular activities (AAA) | 1.4E-10 | 210 | 337 |
| PF13401 | AAA_22 | AAA domain | 9.2E-09 | 205 | 327 |
| PF13191 | AAA_16 | AAA ATPase domain | 3.1E-08 | 182 | 262 |
| PF09079 | Cdc6_C | CDC6, C terminal winged helix domain | 1.6E-06 | 526 | 580 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016887 | ATP hydrolysis activity | Yes |
| GO:0005524 | ATP binding | Yes |
| GO:0005488 | binding | No |
| GO:0032553 | ribonucleotide binding | No |
| GO:0035639 | purine ribonucleoside triphosphate binding | No |
| GO:0032559 | adenyl ribonucleotide binding | No |
| GO:0043167 | ion binding | No |
| GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | No |
| GO:0017076 | purine nucleotide binding | No |
| GO:0097367 | carbohydrate derivative binding | No |
| GO:0016462 | pyrophosphatase activity | No |
| GO:0030554 | adenyl nucleotide binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0036094 | small molecule binding | No |
| GO:0003674 | molecular_function | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0032555 | purine ribonucleotide binding | No |
| GO:0016787 | hydrolase activity | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0043168 | anion binding | No |
| GO:0016817 | hydrolase activity, acting on acid anhydrides | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0017111 | nucleoside-triphosphatase activity | No |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 5.29 | 1.89 | 8.69 |
| 5d_25C | Five days - 25 degrees Celsius | 3.31 | 0.93 | 5.68 |
| 7d_25C | Seven days - 25 degrees Celsius | 4.79 | 1.57 | 8.01 |
| 10d_25C | Ten days - 25 degrees Celsius | 3.01 | 0.89 | 5.14 |
| 7d_15C | Seven days - 15 degrees Celsius | 3.35 | 0.78 | 5.92 |
| 7d_30C | Seven days - 30 degrees Celsius | 3.38 | 0.93 | 5.82 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.240614 | no |
| 3d_25C | 7d_25C | 0.857777 | no |
| 3d_25C | 7d_15C | 0.276910 | no |
| 3d_25C | 7d_30C | 0.269398 | no |
| 3d_25C | 10d_25C | 0.128266 | no |
| 5d_25C | 7d_25C | 0.408515 | no |
| 5d_25C | 7d_15C | 0.987062 | no |
| 5d_25C | 7d_30C | 0.974717 | no |
| 5d_25C | 10d_25C | 0.872254 | no |
| 7d_25C | 7d_15C | 0.438472 | no |
| 7d_25C | 7d_30C | 0.440366 | no |
| 7d_25C | 10d_25C | 0.251113 | no |
| 7d_15C | 7d_30C | 0.989720 | no |
| 7d_15C | 10d_25C | 0.854296 | no |
| 7d_30C | 10d_25C | 0.837515 | no |
| Orthofinder run ID | 2 |
| Orthogroup | 695 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g362.t1 MAGTVLGKRTRGVADPALPVRTASKRRTVAPRAHQQDTVPTSLRRTRSTVKKAVEQPDQENGESKTASENVSSKH TLRDDQFKSPVKINSHFTVSKPVEEEITKPIEFEFKTPSKSRFRDDLPQSPVTPRHRVQVGAKAVTPRTPRHADL PPTPRQSATPKIVNSVYSQARQLFARGSNSGRLVGRDAEREKLISFITEGVNSRKGGCLYISGPPGTGKSAMVQE VCGDLDLSKVKVSHVNCASMRISRDVYSRLIQDFCEDSDMFKKSEGDRLKSTFIPSKKGQDMFLVTLDEIDHLLN GDSGVLQSLFEWSLQSKSKLMLIGIANALDLTDRSLPQLKAKNLKPRLLPFLPYSAASIANVMTNRLRSLLPAGA ESDPKLVPFVQPAAIQLCSKKVASQTGDLRKAFELIKRAIDVIEQETLQKLDKQAKESENVSILGENTNLSSPAK VGGAPKPTSMSSYTVITAPRASIAHIARITSAAFGQGTVQRLQSLNLQQKAAICSLIALERKRRQFEVPSTPSKS RTSAPTIKQAFDTYCALCRNDNILHPLTATEFKDVLSNLETMGLVGEYQGRGRGGTVAGGTDLRRTPSKSGHAPS TPHKALDEQALVCFVSQQEIESQIVGPGEGILRRLLRGEGL* |
| Coding | >Pro_DTO377G3_2|g362.t1 ATGGCAGGAACAGTTCTAGGAAAGCGCACTCGTGGTGTCGCGGACCCAGCATTGCCGGTGCGAACCGCCAGCAAG CGCCGAACAGTTGCTCCTCGAGCTCACCAACAAGATACCGTTCCAACCTCATTACGACGAACAAGGTCAACTGTA AAGAAAGCTGTCGAACAACCTGACCAAGAAAATGGCGAGAGCAAGACAGCGTCGGAGAATGTTTCTTCTAAACAT ACCTTGCGCGATGACCAGTTCAAATCTCCGGTCAAGATCAATTCGCATTTCACCGTCTCGAAACCGGTGGAAGAA GAAATTACGAAACCTATCGAGTTCGAGTTCAAGACACCTTCGAAATCGCGATTCCGAGATGATTTACCGCAGTCT CCCGTCACCCCTAGACATCGAGTACAGGTCGGAGCAAAGGCAGTAACACCGCGCACCCCCCGCCATGCCGATCTC CCCCCGACCCCTAGGCAGAGTGCCACTCCAAAAATTGTGAACTCGGTGTATTCGCAAGCTAGGCAATTGTTCGCC CGAGGCTCTAACTCGGGTCGCTTAGTGGGACGTGATGCGGAGCGGGAAAAGTTGATATCTTTTATCACAGAAGGA GTGAACTCTCGGAAAGGAGGGTGTCTCTATATTAGCGGTCCGCCAGGAACCGGAAAGAGTGCCATGGTCCAGGAA GTGTGTGGAGATCTCGATCTTTCTAAAGTCAAAGTCTCGCATGTGAATTGCGCAAGCATGCGAATCTCTCGCGAT GTCTACAGTAGACTCATCCAGGATTTCTGCGAGGACTCGGATATGTTCAAGAAGAGCGAAGGCGATCGCCTCAAA TCTACGTTCATTCCATCCAAGAAAGGGCAAGATATGTTCCTGGTCACTTTGGACGAAATTGACCATCTGCTCAAT GGTGATTCAGGGGTTTTGCAGTCGCTTTTCGAGTGGTCATTGCAAAGCAAGTCCAAGCTGATGCTGATCGGCATC GCTAACGCCCTTGATTTGACCGACCGATCTCTCCCACAGTTAAAGGCAAAGAACCTGAAGCCCCGTTTGCTGCCG TTCTTGCCGTACAGTGCTGCATCTATCGCAAACGTCATGACCAATCGTCTTCGCTCATTACTCCCTGCTGGGGCA GAGTCTGACCCAAAGCTTGTCCCCTTTGTTCAACCAGCCGCCATCCAACTTTGCTCCAAGAAAGTAGCCTCACAG ACAGGGGATCTCCGCAAGGCCTTTGAGTTGATCAAGCGAGCAATCGACGTCATTGAACAGGAAACATTACAAAAG TTGGACAAGCAAGCTAAGGAGTCCGAGAATGTTTCGATACTAGGAGAGAACACCAATTTGTCATCTCCTGCCAAA GTTGGCGGTGCTCCGAAGCCAACTTCCATGTCAAGCTACACAGTCATCACGGCACCCCGAGCCAGCATCGCCCAC ATTGCCCGAATCACATCCGCAGCTTTCGGTCAAGGCACTGTTCAGAGACTGCAAAGTTTAAACCTGCAACAAAAA GCCGCTATCTGCTCTCTGATTGCGCTTGAACGCAAACGCCGCCAGTTCGAGGTTCCGAGCACGCCGTCCAAGTCG CGTACATCGGCACCCACTATCAAGCAAGCATTTGATACATATTGTGCGCTGTGCCGCAATGACAACATTTTACAC CCCTTGACTGCCACCGAGTTCAAAGACGTTCTCAGCAACTTGGAAACAATGGGCTTGGTTGGAGAATACCAGGGT CGCGGTCGAGGTGGAACTGTTGCAGGTGGCACGGATCTGCGTCGCACACCCTCAAAATCTGGCCATGCTCCTTCG ACTCCTCATAAGGCCCTTGACGAGCAAGCTCTTGTCTGCTTTGTTTCCCAGCAGGAAATCGAGAGCCAGATCGTT GGACCTGGCGAAGGAATCCTTCGGCGTCTTCTACGCGGCGAGGGACTATGA |
| Transcript | >Pro_DTO377G3_2|g362.t1 ATGGCAGGAACAGTTCTAGGAAAGCGCACTCGTGGTGTCGCGGACCCAGCATTGCCGGTGCGAACCGCCAGCAAG CGCCGAACAGTTGCTCCTCGAGCTCACCAACAAGATACCGTTCCAACCTCATTACGACGAACAAGGTCAACTGTA AAGAAAGCTGTCGAACAACCTGACCAAGAAAATGGCGAGAGCAAGACAGCGTCGGAGAATGTTTCTTCTAAACAT ACCTTGCGCGATGACCAGTTCAAATCTCCGGTCAAGATCAATTCGCATTTCACCGTCTCGAAACCGGTGGAAGAA GAAATTACGAAACCTATCGAGTTCGAGTTCAAGACACCTTCGAAATCGCGATTCCGAGATGATTTACCGCAGTCT CCCGTCACCCCTAGACATCGAGTACAGGTCGGAGCAAAGGCAGTAACACCGCGCACCCCCCGCCATGCCGATCTC CCCCCGACCCCTAGGCAGAGTGCCACTCCAAAAATTGTGAACTCGGTGTATTCGCAAGCTAGGCAATTGTTCGCC CGAGGCTCTAACTCGGGTCGCTTAGTGGGACGTGATGCGGAGCGGGAAAAGTTGATATCTTTTATCACAGAAGGA GTGAACTCTCGGAAAGGAGGGTGTCTCTATATTAGCGGTCCGCCAGGAACCGGAAAGAGTGCCATGGTCCAGGAA GTGTGTGGAGATCTCGATCTTTCTAAAGTCAAAGTCTCGCATGTGAATTGCGCAAGCATGCGAATCTCTCGCGAT GTCTACAGTAGACTCATCCAGGATTTCTGCGAGGACTCGGATATGTTCAAGAAGAGCGAAGGCGATCGCCTCAAA TCTACGTTCATTCCATCCAAGAAAGGGCAAGATATGTTCCTGGTCACTTTGGACGAAATTGACCATCTGCTCAAT GGTGATTCAGGGGTTTTGCAGTCGCTTTTCGAGTGGTCATTGCAAAGCAAGTCCAAGCTGATGCTGATCGGCATC GCTAACGCCCTTGATTTGACCGACCGATCTCTCCCACAGTTAAAGGCAAAGAACCTGAAGCCCCGTTTGCTGCCG TTCTTGCCGTACAGTGCTGCATCTATCGCAAACGTCATGACCAATCGTCTTCGCTCATTACTCCCTGCTGGGGCA GAGTCTGACCCAAAGCTTGTCCCCTTTGTTCAACCAGCCGCCATCCAACTTTGCTCCAAGAAAGTAGCCTCACAG ACAGGGGATCTCCGCAAGGCCTTTGAGTTGATCAAGCGAGCAATCGACGTCATTGAACAGGAAACATTACAAAAG TTGGACAAGCAAGCTAAGGAGTCCGAGAATGTTTCGATACTAGGAGAGAACACCAATTTGTCATCTCCTGCCAAA GTTGGCGGTGCTCCGAAGCCAACTTCCATGTCAAGCTACACAGTCATCACGGCACCCCGAGCCAGCATCGCCCAC ATTGCCCGAATCACATCCGCAGCTTTCGGTCAAGGCACTGTTCAGAGACTGCAAAGTTTAAACCTGCAACAAAAA GCCGCTATCTGCTCTCTGATTGCGCTTGAACGCAAACGCCGCCAGTTCGAGGTTCCGAGCACGCCGTCCAAGTCG CGTACATCGGCACCCACTATCAAGCAAGCATTTGATACATATTGTGCGCTGTGCCGCAATGACAACATTTTACAC CCCTTGACTGCCACCGAGTTCAAAGACGTTCTCAGCAACTTGGAAACAATGGGCTTGGTTGGAGAATACCAGGGT CGCGGTCGAGGTGGAACTGTTGCAGGTGGCACGGATCTGCGTCGCACACCCTCAAAATCTGGCCATGCTCCTTCG ACTCCTCATAAGGCCCTTGACGAGCAAGCTCTTGTCTGCTTTGTTTCCCAGCAGGAAATCGAGAGCCAGATCGTT GGACCTGGCGAAGGAATCCTTCGGCGTCTTCTACGCGGCGAGGGACTATGA |
| Gene | >Pro_DTO377G3_2|g362.t1 ATGGCAGGAACAGTTCTAGGAAAGCGCACTCGTGGTGTCGCGGACCCAGGTAAGATCGACCATCCCACCTTCCTC TGCTCCTTATCTTCAAGCCCTAACCCGTCTTCTAGCATTGCCGGTGCGAACCGCCAGCAAGCGCCGAACAGTTGC TCCTCGAGCTCACCAACAAGATACCGTTCCAACCTCATTACGACGAACAAGGTCAACTGTAAAGAAAGCTGTCGA ACAACCTGACCAAGAAAATGGCGAGAGCAAGACAGCGTCGGAGAATGTTTCTTCTAAACATACCTTGCGCGATGA CCAGTTCAAATCTCCGGTCAAGATCAATTCGCATTTCACCGTCTCGAAACCGGTGGAAGGTAAGTTCGAAATTTT TGGGTGTTGCGCCTGAGGCACCGCTGATCGGACATGCAGAAGAAATTACGAAACCTATCGAGTTCGAGTTCAAGA CACCTTCGAAATCGCGATTCCGAGATGATTTACCGCAGTCTCCCGTCACCCCTAGACATCGAGTACAGGTCGGAG CAAAGGCAGTAACACCGCGCACCCCCCGCCATGCCGATCTCCCCCCGACCCCTAGGCAGAGTGCCACTCCAAAAA TTGTGAACTCGGTGTATTCGCAAGCTAGGCAATTGTTCGCCCGAGGCTCTAACTCGGGTCGCTTAGTGGGACGTG ATGCGGAGCGGGAAAAGTTGATATCTTTTATCACAGAAGGAGTGAACTCTCGGAAAGGAGGGTGTCTCTATATTA GCGGTCCGCCAGGAACCGGAAAGAGTGCCATGGTCCAGGAAGTGTGTGGAGATCTCGATCTTTCTAAAGTCAAAG TCTCGCATGTGAATTGCGCAAGCATGCGAATCTCTCGCGATGTCTACAGTAGACTCATCCAGGATTTCTGCGAGG ACTCGGATATGTTCAAGAAGAGCGAAGGCGATCGCCTCAAATCTACGTTCATTCCATCCAAGAAAGGGCAAGATA TGTTCCTGGTCACTTTGGACGAAATTGACCATCTGCTCAATGGTGATTCAGGGGTTTTGCAGTCGCTTTTCGAGT GGTCATTGCAAAGCAAGTCCAAGCTGATGCTGATCGGCATCGCTAACGCCCTTGATTTGACCGACCGATCTCTCC CACAGTTAAAGGCAAAGAACCTGAAGCCCCGTTTGCTGCCGTTCTTGCCGTACAGTGCTGCATCTATCGCAAACG TCATGACCAATCGTCTTCGCTCATTACTCCCTGCTGGGGCAGAGTCTGACCCAAAGCTTGTCCCCTTTGTTCAAC CAGCCGCCATCCAACTTTGCTCCAAGAAAGTAGCCTCACAGACAGGGGATCTCCGCAAGGCCTTTGAGTTGATCA AGCGAGCAATCGACGTCATTGAACAGGAAACATTACAAAAGTTGGACAAGCAAGCTAAGGAGTCCGAGAATGTTT CGATACTAGGAGAGAACACCAATTTGTCATCTCCTGCCAAAGTTGGCGGTGCTCCGAAGCCAACTTCCATGTCAA GCTACACAGTCATCACGGCACCCCGAGCCAGCATCGCCCACATTGCCCGAATCACATCCGCAGCTTTCGGTCAAG GCACTGTTCAGAGACTGCAAAGTTTAAACCTGCAACAAAAAGCCGCTATCTGCTCTCTGATTGCGCTTGAACGCA AACGCCGCCAGTTCGAGGTTCCGAGCACGCCGTCCAAGTCGCGTACATCGGCACCCACTATCAAGCAAGCATTTG ATACATATTGTGCGCTGTGCCGCAATGACAACATTTTACACCCCTTGACTGCCACCGAGTTCAAAGACGTTCTCA GCAACTTGGAAACAATGGGCTTGGTTGGAGAATACCAGGGTCGCGGTCGAGGTGGAACTGTTGCAGGTGGCACGG ATCTGCGTCGCACACCCTCAAAATCTGGCCATGCTCCTTCGACTCCTCATAAGGCCCTTGACGAGCAAGCTCTTG TCTGCTTTGTTTCCCAGCAGGAAATCGAGAGCCAGATCGTTGGACCTGGCGAAGGAATCCTTCGGCGTCTTCTAC GCGGCGAGGGACTATGA |