© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3607.t1 |
| Gene name | |
| Location | scaffold_06:211097..211924 |
| Strand | - |
| Gene length (bp) | 827 |
| Transcript length (bp) | 708 |
| Coding sequence length (bp) | 708 |
| Protein length (aa) | 236 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01202 | SKI | Shikimate kinase | 1.8E-11 | 62 | 225 |
| PF13238 | AAA_18 | AAA domain | 5.2E-08 | 56 | 187 |
| PF13671 | AAA_33 | AAA domain | 7.0E-07 | 55 | 190 |
| PF03215 | Rad17 | Rad17 P-loop domain | 1.6E-05 | 48 | 80 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 224.34 | 136.84 | 311.83 |
| 5d_25C | Five days - 25 degrees Celsius | 341.06 | 207.87 | 474.26 |
| 7d_25C | Seven days - 25 degrees Celsius | 362.30 | 217.64 | 506.96 |
| 10d_25C | Ten days - 25 degrees Celsius | 459.32 | 278.42 | 640.23 |
| 7d_15C | Seven days - 15 degrees Celsius | 329.78 | 195.30 | 464.25 |
| 7d_30C | Seven days - 30 degrees Celsius | 365.91 | 221.90 | 509.91 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.043019 | yes |
| 3d_25C | 7d_25C | 0.019886 | yes |
| 3d_25C | 7d_15C | 0.072957 | no |
| 3d_25C | 7d_30C | 0.017485 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.848577 | no |
| 5d_25C | 7d_15C | 0.919468 | no |
| 5d_25C | 7d_30C | 0.820648 | no |
| 5d_25C | 10d_25C | 0.190337 | no |
| 7d_25C | 7d_15C | 0.752063 | no |
| 7d_25C | 7d_30C | 0.978889 | no |
| 7d_25C | 10d_25C | 0.322575 | no |
| 7d_15C | 7d_30C | 0.723246 | no |
| 7d_15C | 10d_25C | 0.134803 | no |
| 7d_30C | 10d_25C | 0.348156 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3607.t1 MLSAGERPQPPQAPAIVDSTASKARIMPDLANGTNGTNGVTSTTPSKPAKQQHIWVVTGPAGCGKSTVGNVLRKE LGIPFLEGDDYHPAANKEKMGEGIPLTDEDRWDWLISLRQAAIDVLSPSKANNFHPPDGVVVACSALKQKYRDVM RVAAYGSPSVHIHFIYLKLKEDVLMERVAHRESHYMKSGMVHSQLAVLEEPKDEWDAITINVEGTMEEVQQNVIH AVTDKLAEYK* |
| Coding | >Pro_DTO377G3_2|g3607.t1 ATGCTCTCCGCAGGAGAACGACCACAGCCTCCCCAAGCTCCCGCCATAGTAGATTCCACCGCAAGCAAGGCGCGC ATCATGCCGGACCTCGCCAACGGCACCAACGGAACCAACGGAGTGACGTCCACTACGCCCTCCAAACCCGCGAAA CAGCAACATATCTGGGTCGTGACCGGTCCAGCAGGGTGCGGAAAAAGCACCGTGGGCAACGTCCTACGCAAGGAG CTTGGTATTCCATTTCTAGAAGGCGACGACTACCACCCCGCAGCCAACAAAGAAAAAATGGGCGAAGGCATCCCA CTCACAGACGAAGACCGCTGGGACTGGCTGATCTCCCTGCGCCAAGCCGCAATCGACGTGCTCTCCCCTTCGAAA GCCAACAACTTCCACCCACCCGACGGCGTGGTAGTAGCGTGCTCCGCGCTGAAGCAGAAGTACCGGGATGTGATG CGCGTTGCTGCGTACGGCTCGCCCTCGGTGCATATTCACTTCATCTACCTCAAGCTCAAGGAGGATGTGCTGATG GAGCGCGTCGCCCATCGCGAATCACACTACATGAAGAGTGGTATGGTACACTCGCAGCTGGCGGTTCTTGAGGAG CCCAAGGACGAGTGGGATGCTATTACTATCAATGTTGAGGGCACGATGGAGGAGGTGCAGCAGAATGTTATTCAT GCTGTTACTGATAAGCTTGCTGAGTATAAATGA |
| Transcript | >Pro_DTO377G3_2|g3607.t1 ATGCTCTCCGCAGGAGAACGACCACAGCCTCCCCAAGCTCCCGCCATAGTAGATTCCACCGCAAGCAAGGCGCGC ATCATGCCGGACCTCGCCAACGGCACCAACGGAACCAACGGAGTGACGTCCACTACGCCCTCCAAACCCGCGAAA CAGCAACATATCTGGGTCGTGACCGGTCCAGCAGGGTGCGGAAAAAGCACCGTGGGCAACGTCCTACGCAAGGAG CTTGGTATTCCATTTCTAGAAGGCGACGACTACCACCCCGCAGCCAACAAAGAAAAAATGGGCGAAGGCATCCCA CTCACAGACGAAGACCGCTGGGACTGGCTGATCTCCCTGCGCCAAGCCGCAATCGACGTGCTCTCCCCTTCGAAA GCCAACAACTTCCACCCACCCGACGGCGTGGTAGTAGCGTGCTCCGCGCTGAAGCAGAAGTACCGGGATGTGATG CGCGTTGCTGCGTACGGCTCGCCCTCGGTGCATATTCACTTCATCTACCTCAAGCTCAAGGAGGATGTGCTGATG GAGCGCGTCGCCCATCGCGAATCACACTACATGAAGAGTGGTATGGTACACTCGCAGCTGGCGGTTCTTGAGGAG CCCAAGGACGAGTGGGATGCTATTACTATCAATGTTGAGGGCACGATGGAGGAGGTGCAGCAGAATGTTATTCAT GCTGTTACTGATAAGCTTGCTGAGTATAAATGA |
| Gene | >Pro_DTO377G3_2|g3607.t1 ATGCTCTCCGCAGGAGAACGACCACAGCCTCCCCAAGCTCCCGCCATAGTAGATTCCACCGCAAGCAAGGCGCGC ATCATGCCGGACCTCGCCAACGGCACCAACGGAACCAACGGAGTGACGTCCACTACGCCCTCCAAACCCGCGAAA CAGCAACATATCTGGGTCGTGACCGGTCCAGCAGGGTGCGGAAAAAGCACCGTGGGCAACGTCCTACGCAAGGAG CTTGGTATTCCATTTCTAGAAGGCGACGACGTAAGTACCCAAGTACCTGAATGCACCACACCCTACACTCCACAC ACCCCCAAACCACCCAATTGCGCCCAAACCCAACAATCACCCAAGTATACACAAATAACTAACACAACCCTCAGT ACCACCCCGCAGCCAACAAAGAAAAAATGGGCGAAGGCATCCCACTCACAGACGAAGACCGCTGGGACTGGCTGA TCTCCCTGCGCCAAGCCGCAATCGACGTGCTCTCCCCTTCGAAAGCCAACAACTTCCACCCACCCGACGGCGTGG TAGTAGCGTGCTCCGCGCTGAAGCAGAAGTACCGGGATGTGATGCGCGTTGCTGCGTACGGCTCGCCCTCGGTGC ATATTCACTTCATCTACCTCAAGCTCAAGGAGGATGTGCTGATGGAGCGCGTCGCCCATCGCGAATCACACTACA TGAAGAGTGGTATGGTACACTCGCAGCTGGCGGTTCTTGAGGAGCCCAAGGACGAGTGGGATGCTATTACTATCA ATGTTGAGGGCACGATGGAGGAGGTGCAGCAGAATGTTATTCATGCTGTTACTGATAAGCTTGCTGAGTATAAAT GA |