Protein ID | Pro_DTO377G3_2|g3607.t1 |
Gene name | |
Location | scaffold_06:211097..211924 |
Strand | - |
Gene length (bp) | 827 |
Transcript length (bp) | 708 |
Coding sequence length (bp) | 708 |
Protein length (aa) | 236 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF01202 | SKI | Shikimate kinase | 1.8E-11 | 62 | 225 |
PF13238 | AAA_18 | AAA domain | 5.2E-08 | 56 | 187 |
PF13671 | AAA_33 | AAA domain | 7.0E-07 | 55 | 190 |
PF03215 | Rad17 | Rad17 P-loop domain | 1.6E-05 | 48 | 80 |
Orthofinder run ID | 2 |
Orthogroup | 340 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Pro_DTO377G3_2|g3607.t1 MLSAGERPQPPQAPAIVDSTASKARIMPDLANGTNGTNGVTSTTPSKPAKQQHIWVVTGPAGCGKSTVGNVLRKE LGIPFLEGDDYHPAANKEKMGEGIPLTDEDRWDWLISLRQAAIDVLSPSKANNFHPPDGVVVACSALKQKYRDVM RVAAYGSPSVHIHFIYLKLKEDVLMERVAHRESHYMKSGMVHSQLAVLEEPKDEWDAITINVEGTMEEVQQNVIH AVTDKLAEYK* |
Coding | >Pro_DTO377G3_2|g3607.t1 ATGCTCTCCGCAGGAGAACGACCACAGCCTCCCCAAGCTCCCGCCATAGTAGATTCCACCGCAAGCAAGGCGCGC ATCATGCCGGACCTCGCCAACGGCACCAACGGAACCAACGGAGTGACGTCCACTACGCCCTCCAAACCCGCGAAA CAGCAACATATCTGGGTCGTGACCGGTCCAGCAGGGTGCGGAAAAAGCACCGTGGGCAACGTCCTACGCAAGGAG CTTGGTATTCCATTTCTAGAAGGCGACGACTACCACCCCGCAGCCAACAAAGAAAAAATGGGCGAAGGCATCCCA CTCACAGACGAAGACCGCTGGGACTGGCTGATCTCCCTGCGCCAAGCCGCAATCGACGTGCTCTCCCCTTCGAAA GCCAACAACTTCCACCCACCCGACGGCGTGGTAGTAGCGTGCTCCGCGCTGAAGCAGAAGTACCGGGATGTGATG CGCGTTGCTGCGTACGGCTCGCCCTCGGTGCATATTCACTTCATCTACCTCAAGCTCAAGGAGGATGTGCTGATG GAGCGCGTCGCCCATCGCGAATCACACTACATGAAGAGTGGTATGGTACACTCGCAGCTGGCGGTTCTTGAGGAG CCCAAGGACGAGTGGGATGCTATTACTATCAATGTTGAGGGCACGATGGAGGAGGTGCAGCAGAATGTTATTCAT GCTGTTACTGATAAGCTTGCTGAGTATAAATGA |
Transcript | >Pro_DTO377G3_2|g3607.t1 ATGCTCTCCGCAGGAGAACGACCACAGCCTCCCCAAGCTCCCGCCATAGTAGATTCCACCGCAAGCAAGGCGCGC ATCATGCCGGACCTCGCCAACGGCACCAACGGAACCAACGGAGTGACGTCCACTACGCCCTCCAAACCCGCGAAA CAGCAACATATCTGGGTCGTGACCGGTCCAGCAGGGTGCGGAAAAAGCACCGTGGGCAACGTCCTACGCAAGGAG CTTGGTATTCCATTTCTAGAAGGCGACGACTACCACCCCGCAGCCAACAAAGAAAAAATGGGCGAAGGCATCCCA CTCACAGACGAAGACCGCTGGGACTGGCTGATCTCCCTGCGCCAAGCCGCAATCGACGTGCTCTCCCCTTCGAAA GCCAACAACTTCCACCCACCCGACGGCGTGGTAGTAGCGTGCTCCGCGCTGAAGCAGAAGTACCGGGATGTGATG CGCGTTGCTGCGTACGGCTCGCCCTCGGTGCATATTCACTTCATCTACCTCAAGCTCAAGGAGGATGTGCTGATG GAGCGCGTCGCCCATCGCGAATCACACTACATGAAGAGTGGTATGGTACACTCGCAGCTGGCGGTTCTTGAGGAG CCCAAGGACGAGTGGGATGCTATTACTATCAATGTTGAGGGCACGATGGAGGAGGTGCAGCAGAATGTTATTCAT GCTGTTACTGATAAGCTTGCTGAGTATAAATGA |
Gene | >Pro_DTO377G3_2|g3607.t1 ATGCTCTCCGCAGGAGAACGACCACAGCCTCCCCAAGCTCCCGCCATAGTAGATTCCACCGCAAGCAAGGCGCGC ATCATGCCGGACCTCGCCAACGGCACCAACGGAACCAACGGAGTGACGTCCACTACGCCCTCCAAACCCGCGAAA CAGCAACATATCTGGGTCGTGACCGGTCCAGCAGGGTGCGGAAAAAGCACCGTGGGCAACGTCCTACGCAAGGAG CTTGGTATTCCATTTCTAGAAGGCGACGACGTAAGTACCCAAGTACCTGAATGCACCACACCCTACACTCCACAC ACCCCCAAACCACCCAATTGCGCCCAAACCCAACAATCACCCAAGTATACACAAATAACTAACACAACCCTCAGT ACCACCCCGCAGCCAACAAAGAAAAAATGGGCGAAGGCATCCCACTCACAGACGAAGACCGCTGGGACTGGCTGA TCTCCCTGCGCCAAGCCGCAATCGACGTGCTCTCCCCTTCGAAAGCCAACAACTTCCACCCACCCGACGGCGTGG TAGTAGCGTGCTCCGCGCTGAAGCAGAAGTACCGGGATGTGATGCGCGTTGCTGCGTACGGCTCGCCCTCGGTGC ATATTCACTTCATCTACCTCAAGCTCAAGGAGGATGTGCTGATGGAGCGCGTCGCCCATCGCGAATCACACTACA TGAAGAGTGGTATGGTACACTCGCAGCTGGCGGTTCTTGAGGAGCCCAAGGACGAGTGGGATGCTATTACTATCA ATGTTGAGGGCACGATGGAGGAGGTGCAGCAGAATGTTATTCATGCTGTTACTGATAAGCTTGCTGAGTATAAAT GA |