© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3606.t1 |
| Gene name | |
| Location | scaffold_06:209014..210623 |
| Strand | + |
| Gene length (bp) | 1609 |
| Transcript length (bp) | 1431 |
| Coding sequence length (bp) | 1431 |
| Protein length (aa) | 477 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00198 | 2-oxoacid_dh | 2-oxoacid dehydrogenases acyltransferase (catalytic domain) | 8.9E-78 | 242 | 473 |
| PF00364 | Biotin_lipoyl | Biotin-requiring enzyme | 3.0E-13 | 53 | 120 |
| PF02817 | E3_binding | e3 binding domain | 7.2E-11 | 180 | 214 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016746 | acyltransferase activity | Yes |
| GO:0016740 | transferase activity | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 20 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 32.44 | 18.35 | 46.53 |
| 5d_25C | Five days - 25 degrees Celsius | 24.55 | 13.03 | 36.07 |
| 7d_25C | Seven days - 25 degrees Celsius | 19.13 | 9.57 | 28.68 |
| 10d_25C | Ten days - 25 degrees Celsius | 16.58 | 7.99 | 25.17 |
| 7d_15C | Seven days - 15 degrees Celsius | 25.36 | 13.57 | 37.15 |
| 7d_30C | Seven days - 30 degrees Celsius | 38.80 | 22.34 | 55.27 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.311648 | no |
| 3d_25C | 7d_25C | 0.038386 | yes |
| 3d_25C | 7d_15C | 0.375003 | no |
| 3d_25C | 7d_30C | 0.527665 | no |
| 3d_25C | 10d_25C | 0.007437 | yes |
| 5d_25C | 7d_25C | 0.420801 | no |
| 5d_25C | 7d_15C | 0.936847 | no |
| 5d_25C | 7d_30C | 0.062630 | no |
| 5d_25C | 10d_25C | 0.161396 | no |
| 7d_25C | 7d_15C | 0.341306 | no |
| 7d_25C | 7d_30C | 0.003625 | yes |
| 7d_25C | 10d_25C | 0.702615 | no |
| 7d_15C | 7d_30C | 0.074572 | no |
| 7d_15C | 10d_25C | 0.116284 | no |
| 7d_30C | 10d_25C | 0.000700 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3606.t1 MGFSRSGGLAARNFRPCLPQNHLRIRSTLPPLLSRKFHASSLLWQIKSQVLKDVGEGITEVQIIQWYVEEGAHIE EWKPLCQYQSDKAVDDITSRYEGVIKKLHFETDDTVPTGRALCDIEVADGKYPDDNPAHESRAAPSEPTPASEIQ AATQAVESSLITPPPIKALDEIPKTKHASLAVPAVRGLLKSHGVNILEINGTGKDGRVMKEDVLKFVAERDSPAL PTSVPTSVSVSPDTRQAESIVNLTPIQSQMFKTMTKSLNIPHFLYADELKINDINAIRKKIAFDKHDPTKITFLP FVVKAVSQALTEFPILNSKVDTTDPAKPKLVMRSKHNIGIAMDTPNGLIVPNIKDVASRSIFDIAAEIARLSALG KSGKLTPADLSGGTITVSNIGNIGGTYVAPVLVPTEVAILGVGRTRAVPIFDDDGQVTRGDMVNFSWSADHRVID GATMAKMGNRVKDLVESPELMLLNLR* |
| Coding | >Pro_DTO377G3_2|g3606.t1 ATGGGTTTCAGCCGCAGTGGGGGACTTGCTGCCCGCAACTTCAGACCTTGTCTACCCCAGAATCACCTCCGCATT CGCTCCACCCTACCTCCGCTCTTGTCCCGAAAATTCCATGCCAGCTCTCTGCTATGGCAGATCAAATCACAAGTT CTCAAGGACGTCGGCGAGGGCATCACTGAGGTCCAGATCATCCAGTGGTACGTAGAAGAAGGGGCTCATATTGAG GAATGGAAACCTTTGTGCCAATACCAGTCGGATAAAGCTGTCGATGATATTACATCGAGATATGAGGGTGTAATC AAGAAACTACACTTCGAGACAGACGATACAGTACCTACGGGAAGGGCACTCTGCGACATCGAGGTTGCGGATGGA AAATACCCCGATGATAACCCGGCGCACGAATCAAGGGCAGCGCCGTCTGAACCTACCCCGGCTTCTGAGATCCAA GCTGCAACTCAAGCAGTCGAATCCTCTCTAATAACCCCTCCCCCTATCAAAGCTCTTGATGAGATACCCAAAACG AAGCATGCATCCCTTGCAGTTCCCGCAGTACGTGGGCTATTGAAAAGCCACGGCGTGAACATCCTCGAAATCAAC GGAACCGGAAAAGACGGGCGGGTGATGAAAGAAGATGTACTGAAGTTTGTAGCAGAGAGAGATTCTCCAGCGCTT CCAACATCAGTGCCCACCTCAGTCTCCGTGTCACCGGACACACGGCAAGCAGAGTCAATTGTCAACCTGACTCCG ATCCAATCACAGATGTTCAAAACAATGACCAAATCCCTGAACATTCCACACTTCCTTTACGCAGACGAACTCAAA ATCAACGACATCAATGCCATCCGCAAGAAAATTGCCTTTGACAAACACGATCCTACCAAAATCACCTTCCTCCCT TTCGTCGTCAAGGCCGTCTCACAGGCTCTGACCGAGTTCCCAATTCTCAACTCCAAAGTCGATACCACGGACCCC GCAAAGCCGAAGCTAGTCATGCGCTCCAAGCACAATATCGGAATTGCTATGGATACACCGAATGGTCTGATTGTT CCGAATATCAAGGACGTCGCCAGTCGCTCGATCTTCGACATTGCTGCTGAGATCGCGCGGCTGAGTGCCCTTGGG AAGAGCGGAAAGCTGACCCCCGCTGATCTCAGTGGTGGCACGATCACCGTGTCGAACATCGGCAATATTGGAGGC ACATACGTAGCTCCGGTGCTTGTGCCAACGGAGGTGGCTATTCTCGGCGTGGGTAGGACTAGAGCTGTGCCCATC TTTGATGACGATGGACAGGTGACACGCGGAGATATGGTTAACTTCAGTTGGAGCGCGGATCACCGCGTCATTGAC GGTGCGACAATGGCCAAAATGGGTAACAGGGTTAAGGACCTGGTTGAGTCGCCCGAGCTTATGCTTCTAAATCTC AGGTGA |
| Transcript | >Pro_DTO377G3_2|g3606.t1 ATGGGTTTCAGCCGCAGTGGGGGACTTGCTGCCCGCAACTTCAGACCTTGTCTACCCCAGAATCACCTCCGCATT CGCTCCACCCTACCTCCGCTCTTGTCCCGAAAATTCCATGCCAGCTCTCTGCTATGGCAGATCAAATCACAAGTT CTCAAGGACGTCGGCGAGGGCATCACTGAGGTCCAGATCATCCAGTGGTACGTAGAAGAAGGGGCTCATATTGAG GAATGGAAACCTTTGTGCCAATACCAGTCGGATAAAGCTGTCGATGATATTACATCGAGATATGAGGGTGTAATC AAGAAACTACACTTCGAGACAGACGATACAGTACCTACGGGAAGGGCACTCTGCGACATCGAGGTTGCGGATGGA AAATACCCCGATGATAACCCGGCGCACGAATCAAGGGCAGCGCCGTCTGAACCTACCCCGGCTTCTGAGATCCAA GCTGCAACTCAAGCAGTCGAATCCTCTCTAATAACCCCTCCCCCTATCAAAGCTCTTGATGAGATACCCAAAACG AAGCATGCATCCCTTGCAGTTCCCGCAGTACGTGGGCTATTGAAAAGCCACGGCGTGAACATCCTCGAAATCAAC GGAACCGGAAAAGACGGGCGGGTGATGAAAGAAGATGTACTGAAGTTTGTAGCAGAGAGAGATTCTCCAGCGCTT CCAACATCAGTGCCCACCTCAGTCTCCGTGTCACCGGACACACGGCAAGCAGAGTCAATTGTCAACCTGACTCCG ATCCAATCACAGATGTTCAAAACAATGACCAAATCCCTGAACATTCCACACTTCCTTTACGCAGACGAACTCAAA ATCAACGACATCAATGCCATCCGCAAGAAAATTGCCTTTGACAAACACGATCCTACCAAAATCACCTTCCTCCCT TTCGTCGTCAAGGCCGTCTCACAGGCTCTGACCGAGTTCCCAATTCTCAACTCCAAAGTCGATACCACGGACCCC GCAAAGCCGAAGCTAGTCATGCGCTCCAAGCACAATATCGGAATTGCTATGGATACACCGAATGGTCTGATTGTT CCGAATATCAAGGACGTCGCCAGTCGCTCGATCTTCGACATTGCTGCTGAGATCGCGCGGCTGAGTGCCCTTGGG AAGAGCGGAAAGCTGACCCCCGCTGATCTCAGTGGTGGCACGATCACCGTGTCGAACATCGGCAATATTGGAGGC ACATACGTAGCTCCGGTGCTTGTGCCAACGGAGGTGGCTATTCTCGGCGTGGGTAGGACTAGAGCTGTGCCCATC TTTGATGACGATGGACAGGTGACACGCGGAGATATGGTTAACTTCAGTTGGAGCGCGGATCACCGCGTCATTGAC GGTGCGACAATGGCCAAAATGGGTAACAGGGTTAAGGACCTGGTTGAGTCGCCCGAGCTTATGCTTCTAAATCTC AGGTGA |
| Gene | >Pro_DTO377G3_2|g3606.t1 ATGGGTTTCAGCCGCAGTGGGGGACTTGCTGCCCGCAACTTCAGACCTTGTCTACCCCAGAATCACCTCCGCATT CGCTCCACCCTACCTCCGCTCTTGTCCCGAAAATTCCATGCCAGCTCTCTGCTATGGCAGATCAAATCACAAGTT CTCAAGGACGTCGGCGAGGGTAATTTATTCATAATCCTAACTCATTCCTCAATTTGTTCACTTACAATTACCAGG CATCACTGAGGTCCAGATCATCCAGTGGTACGTAGAAGAAGGGGCTCATATTGAGGAATGGAAACCTTTGTGCCA ATACCAGTCGGATAAAGCTGTCGATGATGTGGGTGCTGCCTCCTTTGTTCCCTGCTATGGGTTAACGACTAACAA ACCCAGATTACATCGAGATATGAGGGTGTAATCAAGAAACTACACTTCGAGACAGACGATACAGTACCTACGGGA AGGGTATGTACTACCTTCACTCTTGCTTGTCTGAAAGTCAGACTGCAGTCAACGTACTAACAGGCTTCGATAGGC ACTCTGCGACATCGAGGTTGCGGATGGAAAATACCCCGATGATAACCCGGCGCACGAATCAAGGGCAGCGCCGTC TGAACCTACCCCGGCTTCTGAGATCCAAGCTGCAACTCAAGCAGTCGAATCCTCTCTAATAACCCCTCCCCCTAT CAAAGCTCTTGATGAGATACCCAAAACGAAGCATGCATCCCTTGCAGTTCCCGCAGTACGTGGGCTATTGAAAAG CCACGGCGTGAACATCCTCGAAATCAACGGAACCGGAAAAGACGGGCGGGTGATGAAAGAAGATGTACTGAAGTT TGTAGCAGAGAGAGATTCTCCAGCGCTTCCAACATCAGTGCCCACCTCAGTCTCCGTGTCACCGGACACACGGCA AGCAGAGTCAATTGTCAACCTGACTCCGATCCAATCACAGATGTTCAAAACAATGACCAAATCCCTGAACATTCC ACACTTCCTTTACGCAGACGAACTCAAAATCAACGACATCAATGCCATCCGCAAGAAAATTGCCTTTGACAAACA CGATCCTACCAAAATCACCTTCCTCCCTTTCGTCGTCAAGGCCGTCTCACAGGCTCTGACCGAGTTCCCAATTCT CAACTCCAAAGTCGATACCACGGACCCCGCAAAGCCGAAGCTAGTCATGCGCTCCAAGCACAATATCGGAATTGC TATGGATACACCGAATGGTCTGATTGTTCCGAATATCAAGGACGTCGCCAGTCGCTCGATCTTCGACATTGCTGC TGAGATCGCGCGGCTGAGTGCCCTTGGGAAGAGCGGAAAGCTGACCCCCGCTGATCTCAGTGGTGGCACGATCAC CGTGTCGAACATCGGCAATATTGGAGGCACATACGTAGCTCCGGTGCTTGTGCCAACGGAGGTGGCTATTCTCGG CGTGGGTAGGACTAGAGCTGTGCCCATCTTTGATGACGATGGACAGGTGACACGCGGAGATATGGTTAACTTCAG TTGGAGCGCGGATCACCGCGTCATTGACGGTGCGACAATGGCCAAAATGGGTAACAGGGTTAAGGACCTGGTTGA GTCGCCCGAGCTTATGCTTCTAAATCTCAGGTGA |