Fungal Genomics

at Utrecht University

General Properties

Protein ID	Pro_DTO377G3_2\|g3590.t1
Gene name
Location	scaffold_06:171816..172811
Strand	-
Gene length (bp)	995
Transcript length (bp)	876
Coding sequence length (bp)	876
Protein length (aa)	292

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF04479	RTA1	RTA1 like protein	1.0E-69	58	274

GO

GO Term	Description	Terminal node
GO:0016021	integral component of membrane	Yes
GO:0110165	cellular anatomical entity	No
GO:0005575	cellular_component	No
GO:0031224	intrinsic component of membrane	No

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 67	0.5

Transmembrane Domains

Domain #	Start	End	Length
1	27	49	22
2	54	76	22
3	86	108	22
4	129	151	22
5	161	183	22
6	211	233	22
7	248	270	22

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Pro_DTO377G3_2\|g3590.t1 MSNSDNCTLQTCPLDDAYIQYQPNVAGNIFYLALFAIILIGQIGTGIVFRSWTFMVPMVAGLILEVIGYLGRILL HDNPFNFDDFLMYLICLTIAPAFFTAGIYLCLGRIVTVYGEEFSRLKPRSYTYLFVTCDLISLILQAAGGAITSI AEVQSLRDTGVNIMIAGLVFQVVSLVLFSILAIEYGVRVLRGRRLHSPTQERPTNWMRRSFLLGLTTAVLTILIR SSFRVAELQGGFQSKLANDEIALMILEGAMISIACICLTGLHPALLVGKNWGTPKAIARDLEMEDK*
Coding	>Pro_DTO377G3_2\|g3590.t1 ATGTCCAATTCGGATAATTGCACTTTGCAGACATGTCCTTTAGATGATGCTTATATCCAGTATCAGCCTAACGTG GCCGGGAACATCTTCTATCTCGCTCTTTTCGCAATCATACTCATTGGACAGATCGGTACGGGTATCGTATTTCGA TCTTGGACTTTCATGGTGCCAATGGTCGCGGGCCTTATATTGGAGGTCATAGGATATCTGGGCCGAATTCTCTTA CATGATAACCCTTTCAACTTCGATGATTTCTTGATGTATCTGATATGTCTCACCATTGCCCCGGCATTCTTCACG GCTGGAATCTATCTATGCCTCGGCCGTATTGTTACAGTTTACGGCGAAGAGTTCTCACGCTTAAAACCAAGATCC TATACCTACTTGTTCGTGACTTGCGATCTGATTTCTCTGATCTTGCAAGCGGCCGGTGGAGCCATCACTTCAATT GCCGAAGTACAGTCACTTCGCGATACTGGTGTCAACATCATGATCGCTGGACTGGTCTTTCAAGTTGTATCACTA GTATTGTTCTCTATTCTAGCCATTGAGTATGGAGTTCGGGTTTTAAGAGGGAGACGCCTGCATTCCCCTACTCAA GAACGACCGACAAACTGGATGAGGAGATCGTTCTTGCTTGGTTTAACAACTGCCGTTCTAACTATATTGATCCGA TCTTCATTCCGAGTGGCCGAGCTCCAGGGTGGATTCCAGAGTAAATTGGCCAACGACGAAATAGCCTTGATGATT CTCGAAGGCGCTATGATTTCAATTGCGTGCATTTGCTTGACCGGTCTACATCCCGCTTTGCTTGTGGGTAAGAAC TGGGGGACGCCTAAAGCAATTGCACGAGACTTGGAAATGGAGGATAAATAA
Transcript	>Pro_DTO377G3_2\|g3590.t1 ATGTCCAATTCGGATAATTGCACTTTGCAGACATGTCCTTTAGATGATGCTTATATCCAGTATCAGCCTAACGTG GCCGGGAACATCTTCTATCTCGCTCTTTTCGCAATCATACTCATTGGACAGATCGGTACGGGTATCGTATTTCGA TCTTGGACTTTCATGGTGCCAATGGTCGCGGGCCTTATATTGGAGGTCATAGGATATCTGGGCCGAATTCTCTTA CATGATAACCCTTTCAACTTCGATGATTTCTTGATGTATCTGATATGTCTCACCATTGCCCCGGCATTCTTCACG GCTGGAATCTATCTATGCCTCGGCCGTATTGTTACAGTTTACGGCGAAGAGTTCTCACGCTTAAAACCAAGATCC TATACCTACTTGTTCGTGACTTGCGATCTGATTTCTCTGATCTTGCAAGCGGCCGGTGGAGCCATCACTTCAATT GCCGAAGTACAGTCACTTCGCGATACTGGTGTCAACATCATGATCGCTGGACTGGTCTTTCAAGTTGTATCACTA GTATTGTTCTCTATTCTAGCCATTGAGTATGGAGTTCGGGTTTTAAGAGGGAGACGCCTGCATTCCCCTACTCAA GAACGACCGACAAACTGGATGAGGAGATCGTTCTTGCTTGGTTTAACAACTGCCGTTCTAACTATATTGATCCGA TCTTCATTCCGAGTGGCCGAGCTCCAGGGTGGATTCCAGAGTAAATTGGCCAACGACGAAATAGCCTTGATGATT CTCGAAGGCGCTATGATTTCAATTGCGTGCATTTGCTTGACCGGTCTACATCCCGCTTTGCTTGTGGGTAAGAAC TGGGGGACGCCTAAAGCAATTGCACGAGACTTGGAAATGGAGGATAAATAA
Gene	>Pro_DTO377G3_2\|g3590.t1 ATGTCCAATTCGGATAATTGCACTTTGCAGACATGTCCTTTAGATGATGCTTATATCCAGTATCAGCCTAACGTG GCCGGGAACATCTTCTATCTCGCTCTTTTCGCAATCATACTCATTGGACAGATCGGTACGGGTATCGTATTTCGA TCTTGGACTTTCATGGTGCCAATGGTCGCGGGCCTTATATTGGAGGTCATAGGATATCTGGGCCGAATTCTCTTA CATGATAACCCTTTCAACTTCGATGATTTCTTGATGTGGGTTACTGAGCCTACCACATAATTGAATGTATGCTGA CCGAGGCGTGATACATTAGGTATCTGATATGTCTCACCATTGCCCCGGCATTCTTCACGGCTGGAATCTATCTAT GCCTCGGCCGTATTGTTACAGTTTACGGCGAAGAGTTCTCACGCTTAAAACCAAGATCCTATACCTACTTGTTCG TGACTTGCGATCTGATTTCTCTGATCTTGCAAGCGGCCGGTGGAGCCATCACTTCAATTGCCGAAGTACAGTCAC TTCGCGATACTGGTGTCAACATCATGATCGCTGGACTGGTCTTTCAAGTTGTATCACTAGTATTGTTCTCTATTC TAGCCATTGAGTATGGAGTTCGGGTTTTAAGAGGGAGACGCCTGCATTCCCCTACTCAAGAACGACCGACAAACT GGATGAGGAGATCGTTCTTGCTTGGTAAGTAAACCACCTCGATCTTTTCTATGGGCATTCCACTGACTCGAGTTT CATTATCAGGTTTAACAACTGCCGTTCTAACTATATTGATCCGATCTTCATTCCGAGTGGCCGAGCTCCAGGGTG GATTCCAGAGTAAATTGGCCAACGACGAAATAGCCTTGATGATTCTCGAAGGCGCTATGATTTCAATTGCGTGCA TTTGCTTGACCGGTCTACATCCCGCTTTGCTTGTGGGTAAGAACTGGGGGACGCCTAAAGCAATTGCACGAGACT TGGAAATGGAGGATAAATAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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