Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g3586.t1
Gene name
Locationscaffold_06:163955..164737
Strand-
Gene length (bp)782
Transcript length (bp)705
Coding sequence length (bp)705
Protein length (aa) 235

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF16835 SF3A2 Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 3.3E-36 115 209
PF12874 zf-met Zinc-finger of C2H2 type 1.6E-05 54 78

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 12 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 118.99 70.35 167.62
5d_25C Five days - 25 degrees Celsius 129.28 76.64 181.92
7d_25C Seven days - 25 degrees Celsius 138.12 82.50 193.74
10d_25C Ten days - 25 degrees Celsius 188.33 114.73 261.92
7d_15C Seven days - 15 degrees Celsius 115.73 68.28 163.18
7d_30C Seven days - 30 degrees Celsius 118.12 69.65 166.59

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.793911 no
3d_25C 7d_25C 0.591597 no
3d_25C 7d_15C 0.937460 no
3d_25C 7d_30C 0.984481 no
3d_25C 10d_25C 0.031095 yes
5d_25C 7d_25C 0.840192 no
5d_25C 7d_15C 0.714961 no
5d_25C 7d_30C 0.772370 no
5d_25C 10d_25C 0.092202 no
7d_25C 7d_15C 0.513810 no
7d_25C 7d_30C 0.571494 no
7d_25C 10d_25C 0.168534 no
7d_15C 7d_30C 0.956643 no
7d_15C 10d_25C 0.015833 yes
7d_30C 10d_25C 0.021921 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g3586.t1
MDYQNRAGSKFGGGGVASQSATNADRRERLRRIAMETMDIEKDPYIFKNNVGTFECRLCLTVHQNDGSYLAHTQG
RKHQTNLERRAAREDREGKKDQSTLPGVAGVQVKKQLIKIGRPGYKITKIRDPLTRQNGMLFQLQFQEITPGVKP
RVRFMSAFEQQVETPDKNYQYLVVAAEPYQNSAFKIQAKEIDRRDENYWTWFDEDSKEFWIQILFKTEREEIFSG
VPGLAPSQT*
Coding >Pro_DTO377G3_2|g3586.t1
ATGGATTACCAGAACAGAGCTGGTTCCAAGTTCGGCGGCGGCGGCGTCGCCTCCCAATCTGCCACCAACGCCGAC
CGACGTGAGCGACTTCGCAGAATCGCCATGGAGACTATGGATATCGAGAAAGATCCCTACATCTTCAAGAACAAC
GTGGGCACTTTCGAATGCCGTCTCTGCCTGACAGTCCACCAGAACGACGGCTCCTACCTCGCCCACACCCAGGGC
CGCAAGCACCAGACCAATCTGGAGCGACGCGCTGCCCGCGAGGACCGGGAAGGCAAAAAGGATCAATCCACCTTG
CCTGGTGTCGCCGGTGTTCAGGTCAAGAAGCAGCTGATCAAGATCGGCCGACCTGGTTACAAGATCACCAAGATC
CGCGACCCATTGACTCGCCAGAACGGAATGTTGTTCCAGCTGCAGTTCCAGGAGATCACTCCGGGCGTCAAGCCC
CGTGTGCGCTTCATGTCGGCCTTTGAGCAGCAGGTCGAGACTCCCGACAAGAACTACCAGTACCTGGTGGTTGCC
GCCGAACCCTACCAGAACAGTGCGTTCAAGATCCAGGCGAAGGAGATCGATCGCCGCGACGAGAACTACTGGACC
TGGTTCGACGAGGACAGCAAGGAGTTCTGGATCCAGATCCTGTTCAAGACTGAGCGTGAGGAGATCTTCAGCGGT
GTTCCTGGTCTCGCGCCCTCCCAGACCTGA
Transcript >Pro_DTO377G3_2|g3586.t1
ATGGATTACCAGAACAGAGCTGGTTCCAAGTTCGGCGGCGGCGGCGTCGCCTCCCAATCTGCCACCAACGCCGAC
CGACGTGAGCGACTTCGCAGAATCGCCATGGAGACTATGGATATCGAGAAAGATCCCTACATCTTCAAGAACAAC
GTGGGCACTTTCGAATGCCGTCTCTGCCTGACAGTCCACCAGAACGACGGCTCCTACCTCGCCCACACCCAGGGC
CGCAAGCACCAGACCAATCTGGAGCGACGCGCTGCCCGCGAGGACCGGGAAGGCAAAAAGGATCAATCCACCTTG
CCTGGTGTCGCCGGTGTTCAGGTCAAGAAGCAGCTGATCAAGATCGGCCGACCTGGTTACAAGATCACCAAGATC
CGCGACCCATTGACTCGCCAGAACGGAATGTTGTTCCAGCTGCAGTTCCAGGAGATCACTCCGGGCGTCAAGCCC
CGTGTGCGCTTCATGTCGGCCTTTGAGCAGCAGGTCGAGACTCCCGACAAGAACTACCAGTACCTGGTGGTTGCC
GCCGAACCCTACCAGAACAGTGCGTTCAAGATCCAGGCGAAGGAGATCGATCGCCGCGACGAGAACTACTGGACC
TGGTTCGACGAGGACAGCAAGGAGTTCTGGATCCAGATCCTGTTCAAGACTGAGCGTGAGGAGATCTTCAGCGGT
GTTCCTGGTCTCGCGCCCTCCCAGACCTGA
Gene >Pro_DTO377G3_2|g3586.t1
ATGGATTACCAGGTACGTACACGCTGACTTAGCCCGCGCGGCTTCATCTCTTTCATCAAGAAAGAGCTTATCGCT
GACACATCCCGCAGAACAGAGCTGGTTCCAAGTTCGGCGGCGGCGGCGTCGCCTCCCAATCTGCCACCAACGCCG
ACCGACGTGAGCGACTTCGCAGAATCGCCATGGAGACTATGGATATCGAGAAAGATCCCTACATCTTCAAGAACA
ACGTGGGCACTTTCGAATGCCGTCTCTGCCTGACAGTCCACCAGAACGACGGCTCCTACCTCGCCCACACCCAGG
GCCGCAAGCACCAGACCAATCTGGAGCGACGCGCTGCCCGCGAGGACCGGGAAGGCAAAAAGGATCAATCCACCT
TGCCTGGTGTCGCCGGTGTTCAGGTCAAGAAGCAGCTGATCAAGATCGGCCGACCTGGTTACAAGATCACCAAGA
TCCGCGACCCATTGACTCGCCAGAACGGAATGTTGTTCCAGCTGCAGTTCCAGGAGATCACTCCGGGCGTCAAGC
CCCGTGTGCGCTTCATGTCGGCCTTTGAGCAGCAGGTCGAGACTCCCGACAAGAACTACCAGTACCTGGTGGTTG
CCGCCGAACCCTACCAGAACAGTGCGTTCAAGATCCAGGCGAAGGAGATCGATCGCCGCGACGAGAACTACTGGA
CCTGGTTCGACGAGGACAGCAAGGAGTTCTGGATCCAGATCCTGTTCAAGACTGAGCGTGAGGAGATCTTCAGCG
GTGTTCCTGGTCTCGCGCCCTCCCAGACCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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