Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g3586.t1
Gene name
Locationscaffold_06:163955..164737
Strand-
Gene length (bp)782
Transcript length (bp)705
Coding sequence length (bp)705
Protein length (aa) 235

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF16835 SF3A2 Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 3.3E-36 115 209
PF12874 zf-met Zinc-finger of C2H2 type 1.6E-05 54 78

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 12 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g3586.t1
MDYQNRAGSKFGGGGVASQSATNADRRERLRRIAMETMDIEKDPYIFKNNVGTFECRLCLTVHQNDGSYLAHTQG
RKHQTNLERRAAREDREGKKDQSTLPGVAGVQVKKQLIKIGRPGYKITKIRDPLTRQNGMLFQLQFQEITPGVKP
RVRFMSAFEQQVETPDKNYQYLVVAAEPYQNSAFKIQAKEIDRRDENYWTWFDEDSKEFWIQILFKTEREEIFSG
VPGLAPSQT*
Coding >Pro_DTO377G3_2|g3586.t1
ATGGATTACCAGAACAGAGCTGGTTCCAAGTTCGGCGGCGGCGGCGTCGCCTCCCAATCTGCCACCAACGCCGAC
CGACGTGAGCGACTTCGCAGAATCGCCATGGAGACTATGGATATCGAGAAAGATCCCTACATCTTCAAGAACAAC
GTGGGCACTTTCGAATGCCGTCTCTGCCTGACAGTCCACCAGAACGACGGCTCCTACCTCGCCCACACCCAGGGC
CGCAAGCACCAGACCAATCTGGAGCGACGCGCTGCCCGCGAGGACCGGGAAGGCAAAAAGGATCAATCCACCTTG
CCTGGTGTCGCCGGTGTTCAGGTCAAGAAGCAGCTGATCAAGATCGGCCGACCTGGTTACAAGATCACCAAGATC
CGCGACCCATTGACTCGCCAGAACGGAATGTTGTTCCAGCTGCAGTTCCAGGAGATCACTCCGGGCGTCAAGCCC
CGTGTGCGCTTCATGTCGGCCTTTGAGCAGCAGGTCGAGACTCCCGACAAGAACTACCAGTACCTGGTGGTTGCC
GCCGAACCCTACCAGAACAGTGCGTTCAAGATCCAGGCGAAGGAGATCGATCGCCGCGACGAGAACTACTGGACC
TGGTTCGACGAGGACAGCAAGGAGTTCTGGATCCAGATCCTGTTCAAGACTGAGCGTGAGGAGATCTTCAGCGGT
GTTCCTGGTCTCGCGCCCTCCCAGACCTGA
Transcript >Pro_DTO377G3_2|g3586.t1
ATGGATTACCAGAACAGAGCTGGTTCCAAGTTCGGCGGCGGCGGCGTCGCCTCCCAATCTGCCACCAACGCCGAC
CGACGTGAGCGACTTCGCAGAATCGCCATGGAGACTATGGATATCGAGAAAGATCCCTACATCTTCAAGAACAAC
GTGGGCACTTTCGAATGCCGTCTCTGCCTGACAGTCCACCAGAACGACGGCTCCTACCTCGCCCACACCCAGGGC
CGCAAGCACCAGACCAATCTGGAGCGACGCGCTGCCCGCGAGGACCGGGAAGGCAAAAAGGATCAATCCACCTTG
CCTGGTGTCGCCGGTGTTCAGGTCAAGAAGCAGCTGATCAAGATCGGCCGACCTGGTTACAAGATCACCAAGATC
CGCGACCCATTGACTCGCCAGAACGGAATGTTGTTCCAGCTGCAGTTCCAGGAGATCACTCCGGGCGTCAAGCCC
CGTGTGCGCTTCATGTCGGCCTTTGAGCAGCAGGTCGAGACTCCCGACAAGAACTACCAGTACCTGGTGGTTGCC
GCCGAACCCTACCAGAACAGTGCGTTCAAGATCCAGGCGAAGGAGATCGATCGCCGCGACGAGAACTACTGGACC
TGGTTCGACGAGGACAGCAAGGAGTTCTGGATCCAGATCCTGTTCAAGACTGAGCGTGAGGAGATCTTCAGCGGT
GTTCCTGGTCTCGCGCCCTCCCAGACCTGA
Gene >Pro_DTO377G3_2|g3586.t1
ATGGATTACCAGGTACGTACACGCTGACTTAGCCCGCGCGGCTTCATCTCTTTCATCAAGAAAGAGCTTATCGCT
GACACATCCCGCAGAACAGAGCTGGTTCCAAGTTCGGCGGCGGCGGCGTCGCCTCCCAATCTGCCACCAACGCCG
ACCGACGTGAGCGACTTCGCAGAATCGCCATGGAGACTATGGATATCGAGAAAGATCCCTACATCTTCAAGAACA
ACGTGGGCACTTTCGAATGCCGTCTCTGCCTGACAGTCCACCAGAACGACGGCTCCTACCTCGCCCACACCCAGG
GCCGCAAGCACCAGACCAATCTGGAGCGACGCGCTGCCCGCGAGGACCGGGAAGGCAAAAAGGATCAATCCACCT
TGCCTGGTGTCGCCGGTGTTCAGGTCAAGAAGCAGCTGATCAAGATCGGCCGACCTGGTTACAAGATCACCAAGA
TCCGCGACCCATTGACTCGCCAGAACGGAATGTTGTTCCAGCTGCAGTTCCAGGAGATCACTCCGGGCGTCAAGC
CCCGTGTGCGCTTCATGTCGGCCTTTGAGCAGCAGGTCGAGACTCCCGACAAGAACTACCAGTACCTGGTGGTTG
CCGCCGAACCCTACCAGAACAGTGCGTTCAAGATCCAGGCGAAGGAGATCGATCGCCGCGACGAGAACTACTGGA
CCTGGTTCGACGAGGACAGCAAGGAGTTCTGGATCCAGATCCTGTTCAAGACTGAGCGTGAGGAGATCTTCAGCG
GTGTTCCTGGTCTCGCGCCCTCCCAGACCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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