© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3583.t1 |
| Gene name | |
| Location | scaffold_06:152397..153314 |
| Strand | + |
| Gene length (bp) | 917 |
| Transcript length (bp) | 870 |
| Coding sequence length (bp) | 870 |
| Protein length (aa) | 290 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF06220 | zf-U1 | U1 zinc finger | 3.5E-06 | 9 | 43 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0008270 | zinc ion binding | Yes |
| GO:0046914 | transition metal ion binding | No |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:0046872 | metal ion binding | No |
| GO:0043169 | cation binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3583.t1 MSEFWKSAPRYWCKQCKVFIRDTPFEKTQHEASPKHQGNLKRFLRQIHNDNEQKQRDSQRAKTEVERLRQAVSGG SSTDKDSAKGNAPPAPKSTARPASLEERKKQMAQLVAMGVAVPEEFRANMALAGDWQTTSETRIEVQQGLEGPTK SVGIRKRKLEGDEEEDEHAPEPIINKGWGSRMRQYPVAQEDEGLDDLIASTKDIKRTKTFIPKVELDEQETATEQ PTLTAKTEDDSFKPEAQETNESSEIKTEEPAQSSVEPVIEEKPQSEDATPGVVFKKRKPKAMRK* |
| Coding | >Pro_DTO377G3_2|g3583.t1 ATGTCTGAATTCTGGAAATCAGCACCGCGCTACTGGTGCAAACAGTGCAAGGTCTTCATCCGTGACACGCCCTTC GAAAAGACCCAACACGAAGCCAGCCCAAAACATCAAGGCAATCTCAAGCGCTTCCTTAGACAAATACACAATGAC AATGAACAAAAACAAAGAGACTCACAACGCGCGAAAACCGAAGTCGAACGATTGCGACAGGCTGTCAGTGGCGGG TCCTCCACCGACAAAGACAGCGCGAAAGGAAACGCACCGCCAGCCCCTAAATCCACAGCCCGGCCTGCTTCCCTA GAAGAACGAAAGAAACAGATGGCACAGCTCGTGGCAATGGGTGTCGCCGTCCCCGAGGAATTCCGCGCTAATATG GCCTTAGCAGGGGATTGGCAGACGACATCTGAGACAAGGATCGAGGTCCAACAAGGATTAGAAGGCCCCACAAAG TCAGTTGGAATACGCAAGCGCAAACTTGAAGGCGATGAGGAGGAGGATGAGCACGCGCCTGAACCTATTATCAAC AAAGGTTGGGGCTCGAGGATGAGGCAATACCCTGTTGCACAAGAGGACGAGGGCTTGGATGACTTGATTGCATCC ACAAAAGATATTAAGAGGACGAAAACCTTCATTCCGAAAGTCGAGCTTGATGAGCAAGAGACAGCTACTGAACAA CCTACCCTCACTGCAAAGACAGAAGATGATTCTTTCAAGCCAGAGGCGCAAGAGACGAATGAGTCAAGTGAGATC AAGACTGAAGAGCCCGCTCAATCTTCAGTAGAGCCAGTTATTGAAGAGAAGCCGCAGAGTGAAGATGCTACGCCT GGTGTCGTCTTCAAGAAGCGCAAGCCGAAGGCAATGAGAAAATAG |
| Transcript | >Pro_DTO377G3_2|g3583.t1 ATGTCTGAATTCTGGAAATCAGCACCGCGCTACTGGTGCAAACAGTGCAAGGTCTTCATCCGTGACACGCCCTTC GAAAAGACCCAACACGAAGCCAGCCCAAAACATCAAGGCAATCTCAAGCGCTTCCTTAGACAAATACACAATGAC AATGAACAAAAACAAAGAGACTCACAACGCGCGAAAACCGAAGTCGAACGATTGCGACAGGCTGTCAGTGGCGGG TCCTCCACCGACAAAGACAGCGCGAAAGGAAACGCACCGCCAGCCCCTAAATCCACAGCCCGGCCTGCTTCCCTA GAAGAACGAAAGAAACAGATGGCACAGCTCGTGGCAATGGGTGTCGCCGTCCCCGAGGAATTCCGCGCTAATATG GCCTTAGCAGGGGATTGGCAGACGACATCTGAGACAAGGATCGAGGTCCAACAAGGATTAGAAGGCCCCACAAAG TCAGTTGGAATACGCAAGCGCAAACTTGAAGGCGATGAGGAGGAGGATGAGCACGCGCCTGAACCTATTATCAAC AAAGGTTGGGGCTCGAGGATGAGGCAATACCCTGTTGCACAAGAGGACGAGGGCTTGGATGACTTGATTGCATCC ACAAAAGATATTAAGAGGACGAAAACCTTCATTCCGAAAGTCGAGCTTGATGAGCAAGAGACAGCTACTGAACAA CCTACCCTCACTGCAAAGACAGAAGATGATTCTTTCAAGCCAGAGGCGCAAGAGACGAATGAGTCAAGTGAGATC AAGACTGAAGAGCCCGCTCAATCTTCAGTAGAGCCAGTTATTGAAGAGAAGCCGCAGAGTGAAGATGCTACGCCT GGTGTCGTCTTCAAGAAGCGCAAGCCGAAGGCAATGAGAAAATAG |
| Gene | >Pro_DTO377G3_2|g3583.t1 ATGTCTGAATTCTGGAAATCAGCAGTAAGTGTGAAATTTACCTGTCTAGAACCCTGCTGACTATTTCACAGCCGC GCTACTGGTGCAAACAGTGCAAGGTCTTCATCCGTGACACGCCCTTCGAAAAGACCCAACACGAAGCCAGCCCAA AACATCAAGGCAATCTCAAGCGCTTCCTTAGACAAATACACAATGACAATGAACAAAAACAAAGAGACTCACAAC GCGCGAAAACCGAAGTCGAACGATTGCGACAGGCTGTCAGTGGCGGGTCCTCCACCGACAAAGACAGCGCGAAAG GAAACGCACCGCCAGCCCCTAAATCCACAGCCCGGCCTGCTTCCCTAGAAGAACGAAAGAAACAGATGGCACAGC TCGTGGCAATGGGTGTCGCCGTCCCCGAGGAATTCCGCGCTAATATGGCCTTAGCAGGGGATTGGCAGACGACAT CTGAGACAAGGATCGAGGTCCAACAAGGATTAGAAGGCCCCACAAAGTCAGTTGGAATACGCAAGCGCAAACTTG AAGGCGATGAGGAGGAGGATGAGCACGCGCCTGAACCTATTATCAACAAAGGTTGGGGCTCGAGGATGAGGCAAT ACCCTGTTGCACAAGAGGACGAGGGCTTGGATGACTTGATTGCATCCACAAAAGATATTAAGAGGACGAAAACCT TCATTCCGAAAGTCGAGCTTGATGAGCAAGAGACAGCTACTGAACAACCTACCCTCACTGCAAAGACAGAAGATG ATTCTTTCAAGCCAGAGGCGCAAGAGACGAATGAGTCAAGTGAGATCAAGACTGAAGAGCCCGCTCAATCTTCAG TAGAGCCAGTTATTGAAGAGAAGCCGCAGAGTGAAGATGCTACGCCTGGTGTCGTCTTCAAGAAGCGCAAGCCGA AGGCAATGAGAAAATAG |