© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3577.t1 |
| Gene name | |
| Location | scaffold_06:140262..141518 |
| Strand | + |
| Gene length (bp) | 1256 |
| Transcript length (bp) | 1017 |
| Coding sequence length (bp) | 1017 |
| Protein length (aa) | 339 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02826 | 2-Hacid_dh_C | D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain | 1.1E-58 | 127 | 301 |
| PF00389 | 2-Hacid_dh | D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain | 9.8E-15 | 24 | 332 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | Yes |
| GO:0051287 | NAD binding | Yes |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | No |
| GO:0005488 | binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0036094 | small molecule binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 42 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 3.38 | 0.72 | 6.03 |
| 5d_25C | Five days - 25 degrees Celsius | 4.14 | 0.88 | 7.40 |
| 7d_25C | Seven days - 25 degrees Celsius | 7.41 | 2.35 | 12.47 |
| 10d_25C | Ten days - 25 degrees Celsius | 13.17 | 5.13 | 21.20 |
| 7d_15C | Seven days - 15 degrees Celsius | 2.74 | 0.40 | 5.07 |
| 7d_30C | Seven days - 30 degrees Celsius | 10.51 | 3.76 | 17.27 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.726917 | no |
| 3d_25C | 7d_25C | 0.049197 | yes |
| 3d_25C | 7d_15C | 0.735102 | no |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.167227 | no |
| 5d_25C | 7d_15C | 0.428503 | no |
| 5d_25C | 7d_30C | 0.013810 | yes |
| 5d_25C | 10d_25C | 0.002761 | yes |
| 7d_25C | 7d_15C | 0.024417 | yes |
| 7d_25C | 7d_30C | 0.402214 | no |
| 7d_25C | 10d_25C | 0.115127 | no |
| 7d_15C | 7d_30C | 0.001804 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.602273 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3577.t1 MGSTGPKPKVLRLGSIDYAQAAWNALGEVAQLVESAATTRAEFIQECKDGKLDGVVAIYRTMGSLSQTGLVDEEL VNVLPSSLRYIAHCGAGYDQVDVHACSARNPPILVSNVPTAVDDATADVNMFLILGALRNFNTGMNALREGKWRG HPAPPLGHDPQGKVLGILGMGGIGRNLKKKAEAFGMKVIYHNRRRLSDEMSAGAKYVSFDELLSTSDVISLNLPL NKNTRHIIGKAEFAKMKDGVVVVNTARGAVMDEAALVDALDSGKVFSAGLDVFEEEPRIHPGLLSNQNVILVPHM GTWTSETILAIEEWTIENIRMALEVGKLKSPVPEQADL* |
| Coding | >Pro_DTO377G3_2|g3577.t1 ATGGGTTCTACCGGCCCCAAGCCCAAGGTCCTACGCCTTGGAAGTATCGACTATGCACAGGCAGCCTGGAATGCA TTGGGAGAGGTAGCACAGCTAGTTGAGTCAGCGGCGACCACCCGAGCCGAGTTCATCCAAGAGTGCAAAGACGGC AAGCTGGATGGTGTTGTTGCGATATACCGAACAATGGGGTCTTTGAGCCAAACAGGGCTTGTAGACGAGGAGCTA GTGAATGTGCTACCAAGCTCACTCCGATATATCGCGCATTGTGGAGCCGGATATGACCAAGTGGACGTTCATGCC TGCAGTGCGCGCAACCCCCCGATTCTGGTTTCCAATGTCCCAACTGCAGTGGACGATGCCACTGCCGACGTGAAC ATGTTCCTGATTCTTGGTGCATTGCGCAACTTCAACACCGGCATGAACGCCTTGCGCGAGGGTAAATGGCGTGGC CACCCGGCGCCTCCTCTCGGCCATGATCCCCAGGGAAAGGTCCTTGGGATTCTGGGAATGGGTGGTATTGGACGT AATTTGAAGAAAAAGGCAGAGGCCTTTGGGATGAAGGTCATCTATCATAACCGCCGCAGACTCAGTGATGAGATG TCAGCGGGTGCGAAATATGTTTCTTTTGATGAACTCCTGTCCACCAGTGACGTGATCAGCTTGAACCTGCCATTG AATAAAAACACGCGCCATATTATCGGCAAAGCTGAGTTCGCTAAGATGAAGGACGGCGTGGTAGTGGTCAACACT GCCCGCGGCGCTGTCATGGACGAGGCTGCTCTGGTTGATGCCCTAGATAGTGGTAAAGTGTTCTCGGCTGGCCTC GACGTCTTTGAGGAAGAGCCTCGGATTCATCCTGGGTTGCTCAGTAACCAGAATGTGATTCTGGTTCCCCATATG GGCACTTGGACTAGTGAGACAATTCTTGCCATAGAAGAATGGACAATTGAGAACATCCGTATGGCTCTTGAAGTT GGAAAACTAAAGAGCCCAGTTCCGGAACAGGCGGACCTTTGA |
| Transcript | >Pro_DTO377G3_2|g3577.t1 ATGGGTTCTACCGGCCCCAAGCCCAAGGTCCTACGCCTTGGAAGTATCGACTATGCACAGGCAGCCTGGAATGCA TTGGGAGAGGTAGCACAGCTAGTTGAGTCAGCGGCGACCACCCGAGCCGAGTTCATCCAAGAGTGCAAAGACGGC AAGCTGGATGGTGTTGTTGCGATATACCGAACAATGGGGTCTTTGAGCCAAACAGGGCTTGTAGACGAGGAGCTA GTGAATGTGCTACCAAGCTCACTCCGATATATCGCGCATTGTGGAGCCGGATATGACCAAGTGGACGTTCATGCC TGCAGTGCGCGCAACCCCCCGATTCTGGTTTCCAATGTCCCAACTGCAGTGGACGATGCCACTGCCGACGTGAAC ATGTTCCTGATTCTTGGTGCATTGCGCAACTTCAACACCGGCATGAACGCCTTGCGCGAGGGTAAATGGCGTGGC CACCCGGCGCCTCCTCTCGGCCATGATCCCCAGGGAAAGGTCCTTGGGATTCTGGGAATGGGTGGTATTGGACGT AATTTGAAGAAAAAGGCAGAGGCCTTTGGGATGAAGGTCATCTATCATAACCGCCGCAGACTCAGTGATGAGATG TCAGCGGGTGCGAAATATGTTTCTTTTGATGAACTCCTGTCCACCAGTGACGTGATCAGCTTGAACCTGCCATTG AATAAAAACACGCGCCATATTATCGGCAAAGCTGAGTTCGCTAAGATGAAGGACGGCGTGGTAGTGGTCAACACT GCCCGCGGCGCTGTCATGGACGAGGCTGCTCTGGTTGATGCCCTAGATAGTGGTAAAGTGTTCTCGGCTGGCCTC GACGTCTTTGAGGAAGAGCCTCGGATTCATCCTGGGTTGCTCAGTAACCAGAATGTGATTCTGGTTCCCCATATG GGCACTTGGACTAGTGAGACAATTCTTGCCATAGAAGAATGGACAATTGAGAACATCCGTATGGCTCTTGAAGTT GGAAAACTAAAGAGCCCAGTTCCGGAACAGGCGGACCTTTGA |
| Gene | >Pro_DTO377G3_2|g3577.t1 ATGGGTTCTACCGGCCCCAAGCCCAAGGTCCTACGCCTTGGAAGTATCGACTAGTACGTTCACCCCATCTTTTCG CACCATTGATATCCATTTCATGAAATTGACATTCTTCAAACACAGTGCACAGGCAGCCTGGAATGCATTGGGAGA GGTAGCACAGCTAGTTGAGTCAGCGGCGACCACCCGAGCCGAGTTCATCCAAGAGTGCAAAGACGGCAAGCTGGA TGGTGTTGTTGCGATATACCGAACAATGGGGTCTTTGAGCCAAACAGGGCTTGTAGACGAGGAGCTAGTGAATGT GCTACCAAGCTCACTCCGATATATCGCGCATTGTGGTACGTTGAGCTTATGATATGAGTGCTCAAATATGTATAT GTTGACATGCAAAATCTATAGGAGCCGGATATGACCAAGTGGACGTTCATGCCTGCAGTGCGCGCAACCCCCCGA TTCTGGTTTCCAATGTCCCAACTGCAGTGGACGATGCCACTGCCGACGTGAACATGTTCCTGATTCTTGGTGCAT TGCGCAACTTCAACACCGGCATGAACGCCTTGCGCGAGGGTAAATGGCGTGGCCACCCGGCGCCTCCTCTCGGCC ATGATCCCCAGGGAAAGGTCCTTGGGATTCTGGGAATGGGTGGTATTGGACGTAATTTGAAGAAAAAGGCAGAGG CCTTTGGGATGAAGGTCATCTATCATAACCGCCGCAGACTCAGTGATGAGATGTCAGCGGGTGCGAAATATGTTT CTTTTGATGAACTCCTGTCCACCAGTGACGTGATCAGCTTGAACCTGCCATTGAATGTAAGTGATTTCTTGTTCC AAAAGGGAAGCAAATGTGGTATGATACTAATCGCTTGAAGAAAAACACGCGCCATATTATCGGCAAAGCTGAGTT CGCTAAGATGAAGGACGGCGTGGTAGTGGTCAACACTGCCCGCGGCGCTGTCATGGACGAGGCTGCTCTGGTTGA TGCCCTAGATAGTGGTAAAGTGTTCTCGGCTGGCCTCGACGTCTTTGAGGAAGAGCCTCGGATTCATCCTGGGTT GCTCAGTAACCAGAATGTGATTCTGGTTCCCCATATGGGCACTTGGACTAGTGAGGTGAGTTTTGTATTTCCCCA TAAGTAGTGGTGTGAGACTGACTTGACAAAAGACAATTCTTGCCATAGAAGAATGGACAATTGAGAACATCCGTA TGGCTCTTGAAGTTGGAAAACTAAAGAGCCCAGTTCCGGAACAGGCGGACCTTTGA |