© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3556.t1 |
| Gene name | |
| Location | scaffold_06:88123..89676 |
| Strand | - |
| Gene length (bp) | 1553 |
| Transcript length (bp) | 1362 |
| Coding sequence length (bp) | 1362 |
| Protein length (aa) | 454 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00230 | MIP | Major intrinsic protein | 2.7E-44 | 158 | 400 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0015267 | channel activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0022803 | passive transmembrane transporter activity | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 43 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 164 | 186 | 22 |
| 2 | 196 | 218 | 22 |
| 3 | 239 | 261 | 22 |
| 4 | 295 | 317 | 22 |
| 5 | 330 | 352 | 22 |
| 6 | 377 | 399 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 88.83 | 54.36 | 123.30 |
| 5d_25C | Five days - 25 degrees Celsius | 104.16 | 63.58 | 144.74 |
| 7d_25C | Seven days - 25 degrees Celsius | 155.46 | 93.86 | 217.05 |
| 10d_25C | Ten days - 25 degrees Celsius | 177.66 | 107.33 | 247.98 |
| 7d_15C | Seven days - 15 degrees Celsius | 265.73 | 148.68 | 382.79 |
| 7d_30C | Seven days - 30 degrees Celsius | 44.73 | 24.81 | 64.66 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.541577 | no |
| 3d_25C | 7d_25C | 0.006742 | yes |
| 3d_25C | 7d_15C | 0.000700 | yes |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.001278 | yes |
| 5d_25C | 7d_25C | 0.052958 | no |
| 5d_25C | 7d_15C | 0.000700 | yes |
| 5d_25C | 7d_30C | 0.000700 | yes |
| 5d_25C | 10d_25C | 0.007437 | yes |
| 7d_25C | 7d_15C | 0.013513 | yes |
| 7d_25C | 7d_30C | 0.000700 | yes |
| 7d_25C | 10d_25C | 0.627258 | no |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.080312 | no |
| 7d_30C | 10d_25C | 0.000700 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3556.t1 MGNSREPGRDGGVKDAVDAPEYEQPEGTEEEASKNEGMGKNPSYSLAGSGAQNPNNNQGYTDEEYQKYASQYNKQ DDGPTWSLAHPLPHIVRPGMRHGALPEDRKEDRKEDRDGTTENQQDSAHEEEVRKQQSSENRTKKVNDPKEDGFF NTWSKIRHQLREPLAEWLGTTMAMTIGLCATLSNFTSSGQAGSYPAQSLAWGFGFMVAIYTTGGMSGGHLNPAIS ISLSVFRGFPARRCVIYIAAQLLGAITAGGISYAIYHDAIVEVARLANVPQNASVASQALLTLPKPFVRPATAFF TEFVGSAILLGSILALGDDTNAPPGAGMQAFIIGIIISIVILALGYNTGGCFNGARDFGPRLVALMAGWGGNIFR EYHAWWVWGPWIADITGGLFGALIYDMAIFTGGESPVNYPPRRRKRAYRVRALNFRKKLRIGRKKLPDLERSVAA TEQ* |
| Coding | >Pro_DTO377G3_2|g3556.t1 ATGGGAAACTCGAGGGAACCTGGCCGGGATGGCGGAGTCAAGGATGCTGTGGATGCTCCCGAATATGAGCAACCA GAAGGCACCGAAGAAGAAGCAAGCAAGAATGAAGGCATGGGCAAAAACCCATCATATAGTTTGGCTGGCTCTGGC GCACAGAATCCAAACAACAACCAAGGATATACAGATGAAGAGTACCAGAAGTACGCTTCTCAATATAACAAACAA GATGATGGCCCGACCTGGAGCTTGGCTCATCCACTGCCCCATATAGTCCGGCCCGGCATGCGTCACGGCGCCTTG CCAGAGGACCGAAAAGAGGATCGAAAAGAGGATAGAGACGGCACGACAGAGAACCAGCAGGATTCAGCGCACGAG GAGGAAGTTCGCAAACAGCAGTCGTCAGAAAATCGAACGAAGAAGGTCAACGACCCCAAAGAAGACGGCTTTTTC AATACATGGTCGAAAATTCGCCACCAACTTCGTGAGCCGCTGGCCGAATGGCTCGGAACAACTATGGCAATGACA ATTGGTCTTTGCGCGACCTTATCAAACTTCACTTCCTCCGGACAAGCCGGATCATACCCTGCCCAAAGTCTCGCC TGGGGCTTTGGATTCATGGTCGCTATCTACACCACCGGAGGTATGTCTGGTGGTCATTTAAACCCAGCCATCTCA ATCTCGCTGTCTGTATTCCGTGGATTCCCCGCGCGGCGATGCGTGATCTACATTGCCGCGCAACTCCTCGGAGCT ATCACCGCAGGGGGAATATCATACGCGATCTACCATGACGCCATTGTTGAAGTCGCCAGATTGGCGAACGTGCCT CAGAATGCAAGTGTCGCCTCGCAGGCTCTCCTCACGTTACCGAAACCATTTGTCCGTCCTGCGACTGCATTCTTC ACCGAGTTTGTCGGCAGCGCAATATTACTTGGCTCGATTCTAGCTCTGGGGGATGACACTAATGCGCCCCCGGGA GCAGGAATGCAGGCATTTATTATTGGGATCATTATCTCGATTGTGATCCTTGCACTTGGGTATAATACCGGAGGT TGTTTCAATGGCGCACGAGACTTTGGCCCACGGCTTGTTGCCCTCATGGCTGGATGGGGTGGCAATATCTTCCGA GAATACCATGCATGGTGGGTTTGGGGACCATGGATCGCAGACATCACCGGTGGATTGTTTGGCGCATTGATCTAT GATATGGCTATCTTTACCGGTGGTGAGAGTCCAGTCAACTATCCCCCGCGGAGACGAAAGCGGGCATACCGTGTG AGAGCCTTGAATTTTCGGAAGAAGCTTCGTATTGGGAGAAAAAAGCTGCCCGATCTTGAACGTTCTGTTGCAGCT ACTGAGCAATGA |
| Transcript | >Pro_DTO377G3_2|g3556.t1 ATGGGAAACTCGAGGGAACCTGGCCGGGATGGCGGAGTCAAGGATGCTGTGGATGCTCCCGAATATGAGCAACCA GAAGGCACCGAAGAAGAAGCAAGCAAGAATGAAGGCATGGGCAAAAACCCATCATATAGTTTGGCTGGCTCTGGC GCACAGAATCCAAACAACAACCAAGGATATACAGATGAAGAGTACCAGAAGTACGCTTCTCAATATAACAAACAA GATGATGGCCCGACCTGGAGCTTGGCTCATCCACTGCCCCATATAGTCCGGCCCGGCATGCGTCACGGCGCCTTG CCAGAGGACCGAAAAGAGGATCGAAAAGAGGATAGAGACGGCACGACAGAGAACCAGCAGGATTCAGCGCACGAG GAGGAAGTTCGCAAACAGCAGTCGTCAGAAAATCGAACGAAGAAGGTCAACGACCCCAAAGAAGACGGCTTTTTC AATACATGGTCGAAAATTCGCCACCAACTTCGTGAGCCGCTGGCCGAATGGCTCGGAACAACTATGGCAATGACA ATTGGTCTTTGCGCGACCTTATCAAACTTCACTTCCTCCGGACAAGCCGGATCATACCCTGCCCAAAGTCTCGCC TGGGGCTTTGGATTCATGGTCGCTATCTACACCACCGGAGGTATGTCTGGTGGTCATTTAAACCCAGCCATCTCA ATCTCGCTGTCTGTATTCCGTGGATTCCCCGCGCGGCGATGCGTGATCTACATTGCCGCGCAACTCCTCGGAGCT ATCACCGCAGGGGGAATATCATACGCGATCTACCATGACGCCATTGTTGAAGTCGCCAGATTGGCGAACGTGCCT CAGAATGCAAGTGTCGCCTCGCAGGCTCTCCTCACGTTACCGAAACCATTTGTCCGTCCTGCGACTGCATTCTTC ACCGAGTTTGTCGGCAGCGCAATATTACTTGGCTCGATTCTAGCTCTGGGGGATGACACTAATGCGCCCCCGGGA GCAGGAATGCAGGCATTTATTATTGGGATCATTATCTCGATTGTGATCCTTGCACTTGGGTATAATACCGGAGGT TGTTTCAATGGCGCACGAGACTTTGGCCCACGGCTTGTTGCCCTCATGGCTGGATGGGGTGGCAATATCTTCCGA GAATACCATGCATGGTGGGTTTGGGGACCATGGATCGCAGACATCACCGGTGGATTGTTTGGCGCATTGATCTAT GATATGGCTATCTTTACCGGTGGTGAGAGTCCAGTCAACTATCCCCCGCGGAGACGAAAGCGGGCATACCGTGTG AGAGCCTTGAATTTTCGGAAGAAGCTTCGTATTGGGAGAAAAAAGCTGCCCGATCTTGAACGTTCTGTTGCAGCT ACTGAGCAATGA |
| Gene | >Pro_DTO377G3_2|g3556.t1 ATGGGAAACTCGAGGGAACCTGGCCGGGATGGCGGAGTCAAGGGTATGATACAGGTTTGAAGGGATTGCTGCGAG ATAGCAATAATGCTGATACAACGACAGATGCTGTGGATGCTCCCGAATATGAGCAACCAGAAGGCACCGAAGAAG AAGCAAGCAAGAATGAAGGCATGGGCAAAAACCCATCATATAGTTTGGCTGGCTCTGGCGCACAGAATCCAAACA ACAACCAAGGATATACAGATGAAGAGTACCAGAAGTACGCTTCTCAATATAACAAACAAGATGATGGCCCGACCT GGAGCTTGGCTCATCCACTGCCCCATATAGTCCGGCCCGGCATGCGTCACGGCGCCTTGCCAGAGGACCGAAAAG AGGATCGAAAAGAGGATAGAGACGGCACGACAGAGAACCAGCAGGATTCAGCGCACGAGGAGGAAGTTCGCAAAC AGCAGTCGTCAGAAAATCGAACGAAGAAGGTCAACGACCCCAAAGAAGACGGCTTTTTCAATACATGGTCGAAAA TTCGCCACCAACTTCGTGAGCCGCTGGCCGAATGGCTCGGAGTAAGTTTTATCGATATGGCTCAAAAATACAATC AATCAAGCAGTCTGCTAACAAGTGTCTCGCACAGACAACTATGGCAATGACAATTGGTCTTTGCGCGACCTTATC AAACTTCACTTCCTCCGGACAAGCCGGATCATACCCTGCCCAAAGTCTCGCCTGGGGCTTTGGATTCATGGTCGC TATCTACACCACCGGAGGTATGTCTGGTGGTCATTTAAACCCAGCCATCTCAATCTCGCTGTCTGTATTCCGTGG ATTCCCCGCGCGGCGATGCGTGATCTACATTGCCGCGCAACTCCTCGGAGCTATCACCGCAGGGGGAATATCATA CGCGATCTACCATGACGCCATTGTTGAAGTCGCCAGATTGGCGAACGTGCCTCAGAATGCAAGTGTCGCCTCGCA GGCTCTCCTCACGTTACCGAAACCATTTGTCCGTCCTGCGACTGCATTCTTCACCGAGTTTGTCGGCAGCGCAAT ATTACTTGGCTCGATTCTAGCTCTGGGGGATGACACTAATGCGCCCCCGGGAGCAGGAATGCAGGCATTTATTAT TGGGATCATTATCTCGATTGTGATCCTTGCACTTGGGTATAATACCGGAGGGTATGTGTCCTATTTCTAAACTCC CGATTCTAAGTGCTTTCGAAGATAACTAATGATCTGATAGTTGTTTCAATGGCGCACGAGACTTTGGCCCACGGC TTGTTGCCCTCATGGCTGGATGGGGTGGCAATATCTTCCGAGAATACCATGCATGGTGGGTTTGGGGACCATGGA TCGCAGACATCACCGGTGGATTGTTTGGCGCATTGATCTATGATATGGCTATCTTTACCGGTGGTGAGAGTCCAG TCAACTATCCCCCGCGGAGACGAAAGCGGGCATACCGTGTGAGAGCCTTGAATTTTCGGAAGAAGCTTCGTATTG GGAGAAAAAAGCTGCCCGATCTTGAACGTTCTGTTGCAGCTACTGAGCAATGA |