© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3555.t1 |
| Gene name | |
| Location | scaffold_06:86452..87529 |
| Strand | - |
| Gene length (bp) | 1077 |
| Transcript length (bp) | 1026 |
| Coding sequence length (bp) | 1026 |
| Protein length (aa) | 342 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02826 | 2-Hacid_dh_C | D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain | 7.9E-56 | 126 | 303 |
| PF00389 | 2-Hacid_dh | D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain | 1.4E-19 | 57 | 335 |
| PF03446 | NAD_binding_2 | NAD binding domain of 6-phosphogluconate dehydrogenase | 1.1E-07 | 164 | 272 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0051287 | NAD binding | Yes |
| GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | Yes |
| GO:0055114 | oxidation-reduction process | Yes |
| GO:0050661 | NADP binding | Yes |
| GO:0000166 | nucleotide binding | No |
| GO:0008150 | biological_process | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | No |
| GO:0003824 | catalytic activity | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:0048037 | cofactor binding | No |
| GO:0050662 | coenzyme binding | No |
| GO:0008152 | metabolic process | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003674 | molecular_function | No |
| GO:0036094 | small molecule binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3555.t1 MTIGRKPRVVSLGEPAFVGSEYLTQFKTEFDYSVLPATNREEAQVLLPKDINENGPIDAFIVRMGTPPYEPLDQD FFRALAPGCKIITSASAGYNEFDVDWMTNQEIVFCNTVNAVAEATADMAIFLILAVLRNTTNAERSARSGMWRKG ANLVPTCDPSGLTLGIVGMGAIGKYLAKKAAVFNMKIKYYNRHQLPASEEAAYGATYCQSLHELLRESDVVSLNC PLNAATTNLISEAEFSAMKDGVFLINTARGAVIDEKALIAALESGKVQRAGLDVFVNEPSPNPYFLQSDKIVVQP HLGGLTEKAFQKAERECFENIRAFFKTGKANSPVNIKVQTP* |
| Coding | >Pro_DTO377G3_2|g3555.t1 ATGACTATCGGAAGAAAGCCGCGCGTTGTTTCCCTCGGGGAGCCTGCATTCGTGGGCAGTGAATATCTTACTCAA TTCAAGACCGAATTTGACTATTCCGTCCTCCCTGCAACAAATCGCGAGGAAGCCCAGGTATTGCTACCCAAAGAC ATCAACGAAAATGGACCGATAGACGCGTTCATCGTTCGCATGGGTACGCCACCCTACGAGCCACTCGATCAGGAT TTTTTTCGAGCACTAGCACCGGGGTGTAAGATTATCACTTCTGCTAGTGCCGGATACAACGAGTTCGACGTGGAC TGGATGACAAACCAGGAAATTGTGTTTTGTAATACTGTGAATGCCGTCGCTGAGGCTACAGCAGACATGGCTATA TTTCTGATACTTGCTGTTCTGAGGAACACTACAAACGCCGAGCGGAGTGCACGGAGCGGGATGTGGAGGAAGGGC GCAAACCTGGTTCCTACTTGTGATCCGTCGGGATTGACACTTGGTATTGTCGGTATGGGTGCTATTGGAAAGTAC CTCGCCAAGAAAGCCGCGGTCTTCAATATGAAGATCAAGTACTACAATCGACACCAACTACCGGCCTCCGAAGAA GCAGCGTACGGTGCAACATATTGCCAGTCTCTACATGAGCTTCTGCGCGAATCAGATGTCGTCTCCTTGAATTGC CCTCTGAATGCGGCAACCACGAATCTAATCAGCGAAGCCGAATTCTCCGCTATGAAAGACGGTGTATTCCTCATT AACACGGCTAGAGGAGCAGTCATCGACGAAAAGGCTCTCATTGCGGCACTTGAGTCAGGCAAGGTACAGCGGGCT GGACTTGATGTTTTTGTGAACGAGCCGAGTCCGAATCCCTACTTTTTACAAAGTGATAAAATCGTTGTGCAGCCA CATTTGGGTGGTTTGACTGAGAAGGCATTCCAAAAAGCCGAGAGAGAATGCTTTGAGAACATCCGTGCTTTTTTC AAGACTGGGAAGGCAAACTCGCCAGTGAATATCAAAGTCCAAACCCCCTGA |
| Transcript | >Pro_DTO377G3_2|g3555.t1 ATGACTATCGGAAGAAAGCCGCGCGTTGTTTCCCTCGGGGAGCCTGCATTCGTGGGCAGTGAATATCTTACTCAA TTCAAGACCGAATTTGACTATTCCGTCCTCCCTGCAACAAATCGCGAGGAAGCCCAGGTATTGCTACCCAAAGAC ATCAACGAAAATGGACCGATAGACGCGTTCATCGTTCGCATGGGTACGCCACCCTACGAGCCACTCGATCAGGAT TTTTTTCGAGCACTAGCACCGGGGTGTAAGATTATCACTTCTGCTAGTGCCGGATACAACGAGTTCGACGTGGAC TGGATGACAAACCAGGAAATTGTGTTTTGTAATACTGTGAATGCCGTCGCTGAGGCTACAGCAGACATGGCTATA TTTCTGATACTTGCTGTTCTGAGGAACACTACAAACGCCGAGCGGAGTGCACGGAGCGGGATGTGGAGGAAGGGC GCAAACCTGGTTCCTACTTGTGATCCGTCGGGATTGACACTTGGTATTGTCGGTATGGGTGCTATTGGAAAGTAC CTCGCCAAGAAAGCCGCGGTCTTCAATATGAAGATCAAGTACTACAATCGACACCAACTACCGGCCTCCGAAGAA GCAGCGTACGGTGCAACATATTGCCAGTCTCTACATGAGCTTCTGCGCGAATCAGATGTCGTCTCCTTGAATTGC CCTCTGAATGCGGCAACCACGAATCTAATCAGCGAAGCCGAATTCTCCGCTATGAAAGACGGTGTATTCCTCATT AACACGGCTAGAGGAGCAGTCATCGACGAAAAGGCTCTCATTGCGGCACTTGAGTCAGGCAAGGTACAGCGGGCT GGACTTGATGTTTTTGTGAACGAGCCGAGTCCGAATCCCTACTTTTTACAAAGTGATAAAATCGTTGTGCAGCCA CATTTGGGTGGTTTGACTGAGAAGGCATTCCAAAAAGCCGAGAGAGAATGCTTTGAGAACATCCGTGCTTTTTTC AAGACTGGGAAGGCAAACTCGCCAGTGAATATCAAAGTCCAAACCCCCTGA |
| Gene | >Pro_DTO377G3_2|g3555.t1 ATGACTATCGGAAGAAAGCCGCGCGTTGTTTCCCTCGGGGAGCCTGCATTCGTGGGCAGTGAATATCTTACTCAA TTCAAGACCGAATTTGACTATTCCGTCCTCCCTGCAACAAATCGCGAGGAAGCCCAGGTATTGCTACCCAAAGAC ATCAACGAAAATGGACCGATAGACGCGTTCATCGTTCGCATGGGTACGCCACCCTACGAGCCACTCGATCAGGAT TTTTTTCGAGCACTAGCACCGGGGTGTAAGATTATCACTTCTGCTAGTGCCGGATACAACGAGTTCGACGTGGAC TGGATGACAAACCAGGAAATTGTGTTTTGTAATACTGTGAATGCCGTCGCTGAGGCTACAGCAGACATGGCTATA TTTCTGATACTTGCTGTTCTGAGGAACACTACAAACGCCGAGCGGAGTGCACGGAGCGGGATGTGGAGGAAGGGC GCAAACCTGGTTCCTACTTGTGATCCGTCGGGATTGACACTTGGTATTGTCGGTATGGGTGCTATTGGAAAGGTG AATAGTCCGAAGTCCATTGACTCGGAGCGCTGCTGACTTCCTTCTCAGTACCTCGCCAAGAAAGCCGCGGTCTTC AATATGAAGATCAAGTACTACAATCGACACCAACTACCGGCCTCCGAAGAAGCAGCGTACGGTGCAACATATTGC CAGTCTCTACATGAGCTTCTGCGCGAATCAGATGTCGTCTCCTTGAATTGCCCTCTGAATGCGGCAACCACGAAT CTAATCAGCGAAGCCGAATTCTCCGCTATGAAAGACGGTGTATTCCTCATTAACACGGCTAGAGGAGCAGTCATC GACGAAAAGGCTCTCATTGCGGCACTTGAGTCAGGCAAGGTACAGCGGGCTGGACTTGATGTTTTTGTGAACGAG CCGAGTCCGAATCCCTACTTTTTACAAAGTGATAAAATCGTTGTGCAGCCACATTTGGGTGGTTTGACTGAGAAG GCATTCCAAAAAGCCGAGAGAGAATGCTTTGAGAACATCCGTGCTTTTTTCAAGACTGGGAAGGCAAACTCGCCA GTGAATATCAAAGTCCAAACCCCCTGA |