© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3541.t1 |
| Gene name | |
| Location | scaffold_06:56016..57242 |
| Strand | - |
| Gene length (bp) | 1226 |
| Transcript length (bp) | 1176 |
| Coding sequence length (bp) | 1176 |
| Protein length (aa) | 392 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01545 | Cation_efflux | Cation efflux family | 1.3E-26 | 76 | 263 |
| PF16916 | ZT_dimer | Dimerisation domain of Zinc Transporter | 2.7E-10 | 284 | 347 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0008324 | cation transmembrane transporter activity | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0006812 | cation transport | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0051179 | localization | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0005575 | cellular_component | No |
| GO:0003674 | molecular_function | No |
| GO:0005215 | transporter activity | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0051234 | establishment of localization | No |
| GO:0009987 | cellular process | No |
| GO:0006811 | ion transport | No |
| GO:0006810 | transport | No |
| GO:0008150 | biological_process | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 70 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 73 | 95 | 22 |
| 2 | 99 | 121 | 22 |
| 3 | 142 | 164 | 22 |
| 4 | 179 | 201 | 22 |
| 5 | 235 | 257 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3541.t1 MTLLHDPLNLNQYKTTISEPKKNWVPISFSDEKEKLTGFYKEQNEMIEGFLTAGEEERLKAEDEAQNGGKVKLAV RASFTVNFFLFVIQLYAAVTTGSLALFATAADAFMDLVSSVVMLVTSRMSSRPKPYKYPVGRRRVETMGVIMFCA LMTIVAVELIIESAKALAAGKTESEQLDLVPLVCVGVAIFSKFCMFLYCYGLRRYPAAHVFYIDHRNDLAVNGFG LIMSIVGDRFVWYLDPIGACCIALLILFSWASTAFDNMWLIVGKCAPREFLNKCVYVTLTHDQRIQKVDTCRAYH SGQQLYVEVDIVMDPETKLRESHDVSQALQRKLEGLADVERAFVHVDYDYEHDVNEEHRPLYEIGGSKHSIRALV KRLWSRNEEKADGTAV* |
| Coding | >Pro_DTO377G3_2|g3541.t1 ATGACACTCCTCCACGACCCTCTAAACCTCAACCAATACAAAACAACTATATCCGAGCCAAAAAAGAACTGGGTC CCAATCTCTTTCAGCGACGAAAAGGAAAAGCTCACGGGCTTCTACAAAGAGCAAAATGAAATGATCGAGGGCTTC CTCACAGCCGGCGAGGAAGAGCGCCTAAAAGCCGAAGACGAAGCCCAGAACGGCGGCAAAGTAAAGCTAGCCGTG CGCGCCAGCTTCACAGTCAACTTCTTCCTCTTCGTCATCCAGCTCTACGCAGCCGTCACAACAGGCTCTCTCGCC CTCTTCGCCACCGCCGCAGATGCCTTCATGGACCTCGTTTCGTCGGTTGTGATGCTAGTCACGTCGCGCATGTCC TCGCGCCCAAAGCCATACAAGTACCCCGTTGGCCGGCGTCGGGTCGAAACAATGGGCGTCATCATGTTCTGTGCG TTGATGACCATCGTGGCGGTGGAGCTGATCATCGAATCGGCCAAGGCGCTTGCGGCCGGCAAGACTGAGTCCGAG CAGCTGGATCTCGTGCCGCTGGTCTGCGTGGGCGTCGCTATCTTCTCCAAGTTCTGTATGTTCTTGTACTGCTAT GGCTTGCGTCGGTATCCCGCTGCTCATGTCTTTTACATTGACCACCGTAATGATCTGGCTGTCAATGGGTTTGGG TTGATCATGTCGATTGTGGGTGATCGGTTCGTCTGGTATCTTGATCCCATTGGTGCTTGCTGCATTGCGCTGCTT ATCTTGTTTTCGTGGGCGTCGACTGCGTTTGATAATATGTGGTTGATTGTGGGCAAGTGTGCCCCGCGTGAATTC CTGAATAAGTGTGTCTATGTGACATTGACGCACGATCAGAGGATTCAGAAGGTGGATACGTGTCGCGCTTATCAC TCCGGGCAGCAACTCTATGTTGAGGTTGATATCGTCATGGACCCTGAGACTAAGCTTCGGGAGTCCCACGATGTA AGCCAAGCGTTGCAGCGGAAGTTGGAAGGTCTCGCGGACGTCGAGCGAGCCTTTGTGCATGTCGATTATGATTAT GAGCATGATGTCAACGAGGAACACAGACCACTCTATGAGATTGGTGGATCGAAGCACTCCATCCGAGCTTTGGTG AAACGATTGTGGTCTAGAAACGAGGAGAAGGCAGACGGGACTGCTGTGTGA |
| Transcript | >Pro_DTO377G3_2|g3541.t1 ATGACACTCCTCCACGACCCTCTAAACCTCAACCAATACAAAACAACTATATCCGAGCCAAAAAAGAACTGGGTC CCAATCTCTTTCAGCGACGAAAAGGAAAAGCTCACGGGCTTCTACAAAGAGCAAAATGAAATGATCGAGGGCTTC CTCACAGCCGGCGAGGAAGAGCGCCTAAAAGCCGAAGACGAAGCCCAGAACGGCGGCAAAGTAAAGCTAGCCGTG CGCGCCAGCTTCACAGTCAACTTCTTCCTCTTCGTCATCCAGCTCTACGCAGCCGTCACAACAGGCTCTCTCGCC CTCTTCGCCACCGCCGCAGATGCCTTCATGGACCTCGTTTCGTCGGTTGTGATGCTAGTCACGTCGCGCATGTCC TCGCGCCCAAAGCCATACAAGTACCCCGTTGGCCGGCGTCGGGTCGAAACAATGGGCGTCATCATGTTCTGTGCG TTGATGACCATCGTGGCGGTGGAGCTGATCATCGAATCGGCCAAGGCGCTTGCGGCCGGCAAGACTGAGTCCGAG CAGCTGGATCTCGTGCCGCTGGTCTGCGTGGGCGTCGCTATCTTCTCCAAGTTCTGTATGTTCTTGTACTGCTAT GGCTTGCGTCGGTATCCCGCTGCTCATGTCTTTTACATTGACCACCGTAATGATCTGGCTGTCAATGGGTTTGGG TTGATCATGTCGATTGTGGGTGATCGGTTCGTCTGGTATCTTGATCCCATTGGTGCTTGCTGCATTGCGCTGCTT ATCTTGTTTTCGTGGGCGTCGACTGCGTTTGATAATATGTGGTTGATTGTGGGCAAGTGTGCCCCGCGTGAATTC CTGAATAAGTGTGTCTATGTGACATTGACGCACGATCAGAGGATTCAGAAGGTGGATACGTGTCGCGCTTATCAC TCCGGGCAGCAACTCTATGTTGAGGTTGATATCGTCATGGACCCTGAGACTAAGCTTCGGGAGTCCCACGATGTA AGCCAAGCGTTGCAGCGGAAGTTGGAAGGTCTCGCGGACGTCGAGCGAGCCTTTGTGCATGTCGATTATGATTAT GAGCATGATGTCAACGAGGAACACAGACCACTCTATGAGATTGGTGGATCGAAGCACTCCATCCGAGCTTTGGTG AAACGATTGTGGTCTAGAAACGAGGAGAAGGCAGACGGGACTGCTGTGTGA |
| Gene | >Pro_DTO377G3_2|g3541.t1 ATGACACTCCTCCACGACCCTCTAAACCTCAACCAATACAAAACAACTATATCCGAGCCAAAAAAGAACTGGGTC CCAATCTCTTTCAGCGACGAAAAGGAAAAGCTCACGGGCTTCTACAAAGAGCAAAATGAAATGATCGAGGGCTTC CTCACAGCCGGCGAGGAAGAGCGCCTAAAAGCCGAAGACGAAGCCCAGAACGGCGGCAAAGTAAAGCTAGCCGTG CGCGCCAGCTTCACAGTCAACTTCTTCCTCTTCGTCATCCAGCTCTACGCAGCCGTCACAACAGGCTCTCTCGCC CTCTTCGCCACCGCCGCAGATGCCTTCATGGACCTCGTTTCGTCGGTTGTGATGCTAGTCACGTCGCGCATGTCC TCGCGCCCAAAGCCATACAAGTACCCCGTTGGCCGGCGTCGGGTCGAAACAATGGGCGTCATCATGTTCTGTGCG TTGATGACCATCGTGGCGGTGGAGCTGATCATCGAATCGGCCAAGGCGCTTGCGGCCGGCAAGACTGAGTCCGAG CAGCTGGATCTCGTGCCGCTGGTCTGCGTGGGCGTCGCTATCTTCTCCAAGTTCTGTATGTTCTTGTACTGCTAT GGCTTGCGTCGGTATCCCGCTGCTCATGTCTTTTACATTGACCACCGTAATGATCTGGCTGTCAATGGGTTTGGG TTGATCATGTCGATTGTGGGTGATCGGTTCGTCTGGTATCTTGATCCCATTGGTGCTTGCTGCATTGCGCTGCTT ATCTTGTTTTCGTGGGCGTCGACTGCGTTTGATAATATGTGGTTGATTGTGGGCAAGTGTGCCCCGCGTGAATTC CTGAATAAGTGTGTCTATGTGACATTGACGCACGATCAGAGGATTCAGAAGGTGGATACGGTGAGTTGAGAAGGT GGGTGTATTATTGACGTTTGACTAACGGTGCATAGTGTCGCGCTTATCACTCCGGGCAGCAACTCTATGTTGAGG TTGATATCGTCATGGACCCTGAGACTAAGCTTCGGGAGTCCCACGATGTAAGCCAAGCGTTGCAGCGGAAGTTGG AAGGTCTCGCGGACGTCGAGCGAGCCTTTGTGCATGTCGATTATGATTATGAGCATGATGTCAACGAGGAACACA GACCACTCTATGAGATTGGTGGATCGAAGCACTCCATCCGAGCTTTGGTGAAACGATTGTGGTCTAGAAACGAGG AGAAGGCAGACGGGACTGCTGTGTGA |