Penicillium roqueforti LCP96 04111

General Properties

Protein ID	Pro_DTO377G3_2\|g3516.t1
Gene name
Location	scaffold_05:874023..875645
Strand	-
Gene length (bp)	1622
Transcript length (bp)	1569
Coding sequence length (bp)	1569
Protein length (aa)	523

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF00448	SRP54	SRP54-type protein, GTPase domain	5.0E-75	102	296
PF02978	SRP_SPB	Signal peptide binding domain	1.7E-29	329	429
PF02881	SRP54_N	SRP54-type protein, helical bundle domain	1.9E-19	6	83
PF02492	cobW	CobW/HypB/UreG, nucleotide-binding domain	7.6E-07	103	253

GO

GO Term	Description	Terminal node
GO:0008312	7S RNA binding	Yes
GO:0048500	signal recognition particle	Yes
GO:0005525	GTP binding	Yes
GO:0006614	SRP-dependent cotranslational protein targeting to membrane	Yes
GO:0003723	RNA binding	No
GO:0006605	protein targeting	No
GO:0033365	protein localization to organelle	No
GO:0032991	protein-containing complex	No
GO:0005488	binding	No
GO:0006886	intracellular protein transport	No
GO:0051641	cellular localization	No
GO:0000166	nucleotide binding	No
GO:0051234	establishment of localization	No
GO:0003676	nucleic acid binding	No
GO:0005575	cellular_component	No
GO:0015031	protein transport	No
GO:0036094	small molecule binding	No
GO:0097367	carbohydrate derivative binding	No
GO:0017076	purine nucleotide binding	No
GO:0006613	cotranslational protein targeting to membrane	No
GO:0008150	biological_process	No
GO:0006810	transport	No
GO:0043167	ion binding	No
GO:0046907	intracellular transport	No
GO:0006612	protein targeting to membrane	No
GO:0035639	purine ribonucleoside triphosphate binding	No
GO:0032553	ribonucleotide binding	No
GO:0051179	localization	No
GO:1901265	nucleoside phosphate binding	No
GO:0072657	protein localization to membrane	No
GO:0009987	cellular process	No
GO:0051668	localization within membrane	No
GO:0070972	protein localization to endoplasmic reticulum	No
GO:0033036	macromolecule localization	No
GO:0043168	anion binding	No
GO:1901363	heterocyclic compound binding	No
GO:1990904	ribonucleoprotein complex	No
GO:0071705	nitrogen compound transport	No
GO:0008104	protein localization	No
GO:0072599	establishment of protein localization to endoplasmic reticulum	No
GO:0071702	organic substance transport	No
GO:0032555	purine ribonucleotide binding	No
GO:0097159	organic cyclic compound binding	No
GO:0019001	guanyl nucleotide binding	No
GO:0051649	establishment of localization in cell	No
GO:0032561	guanyl ribonucleotide binding	No
GO:0045047	protein targeting to ER	No
GO:0090150	establishment of protein localization to membrane	No
GO:0072594	establishment of protein localization to organelle	No
GO:0070727	cellular macromolecule localization	No
GO:0003674	molecular_function	No
GO:0045184	establishment of protein localization	No

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 67	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
3d_25C	Three days - 25 degrees Celsius	38.40	22.37	54.43
5d_25C	Five days - 25 degrees Celsius	42.37	25.05	59.70
7d_25C	Seven days - 25 degrees Celsius	42.89	25.28	60.50
10d_25C	Ten days - 25 degrees Celsius	51.44	30.81	72.07
7d_15C	Seven days - 15 degrees Celsius	46.64	27.76	65.52
7d_30C	Seven days - 30 degrees Celsius	42.02	24.68	59.36

Differential expression

Label1	Label2	Q-value	Significant difference
3d_25C	5d_25C	0.751775	no
3d_25C	7d_25C	0.711496	no
3d_25C	7d_15C	0.458586	no
3d_25C	7d_30C	0.772954	no
3d_25C	10d_25C	0.224884	no
5d_25C	7d_25C	0.973417	no
5d_25C	7d_15C	0.751201	no
5d_25C	7d_30C	0.981972	no
5d_25C	10d_25C	0.460934	no
7d_25C	7d_15C	0.785129	no
7d_25C	7d_30C	0.954999	no
7d_25C	10d_25C	0.495714	no
7d_15C	7d_30C	0.721933	no
7d_15C	10d_25C	0.739614	no
7d_30C	10d_25C	0.433317	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Pro_DTO377G3_2\|g3516.t1 MVLQDLGRRINSAVNDLTRSSNLDEKAFDDMLKEICAALLSADVNVRLVGTLRKSIKASVNFASLPAAVNKKRLI QKTVFDELVKLVDPRADSFRPKKGRSNVIMFVGLQGAGKTTTCTKLARHYQTRGFKTALVCADTFRAGAFDQLKQ NATKAKIPYYGSLTQTDPAVVAAEGVAKFKKERFDIIIVDTSGRHRQEEELFTEMTQIQNAVTPDQTILVLDSTI GQSAEAQSAAFKATADFGAIIITKTDGHAAGGGAISAVAATHTPIIFLGTGEHMMDLERFEPRAFVQKLLGMGDV AGLVEHVQAMTKDSAGAKETYKHIAEGIYTLRDFRENITSIMKMGPLSKLSGMIPGLSNMTQGLDDEDGSLKLRR MVYIFDSMTVAELDGDGKNFVEQPSRMVRIAHGSGTSVREVEDVLSQHRMMAGMAKRVGGQKKQMQQAQNMMKGG NKNQQMAAMQKRMASMGGAGGGGMPGMPDMAKMMQMMGGGGGGMPDMQSLMSQMGGLMGGMGGGGGGRGRGR*
Coding	>Pro_DTO377G3_2\|g3516.t1 ATGGTTCTTCAAGACCTTGGGCGGCGAATCAACTCCGCTGTCAATGACCTGACGAGGTCCAGTAACCTCGATGAG AAGGCCTTCGATGACATGCTCAAAGAAATTTGCGCCGCTCTTCTTTCCGCCGATGTCAACGTCCGTCTCGTTGGA ACCCTACGCAAATCGATCAAGGCTAGCGTAAACTTCGCATCGCTCCCAGCCGCAGTGAACAAGAAGCGACTGATC CAGAAGACCGTCTTCGACGAGCTCGTAAAATTGGTGGACCCGCGTGCAGACTCCTTCCGGCCGAAGAAGGGTCGC TCCAATGTGATCATGTTCGTCGGTTTGCAGGGTGCGGGTAAGACAACAACGTGTACAAAGCTGGCTCGGCACTAC CAGACGCGAGGATTCAAAACAGCGCTGGTTTGCGCAGATACCTTCCGTGCCGGTGCTTTTGATCAGCTGAAACAG AACGCTACCAAGGCCAAGATCCCATACTATGGTAGTCTGACGCAGACGGATCCTGCTGTCGTGGCCGCGGAGGGT GTGGCCAAGTTTAAGAAAGAGCGTTTCGATATCATCATTGTCGATACCAGTGGTCGCCACCGACAAGAGGAGGAG CTCTTCACGGAAATGACACAAATTCAGAATGCTGTAACACCAGATCAGACTATTCTCGTGCTCGACAGCACAATT GGTCAATCTGCCGAGGCTCAGTCCGCTGCGTTCAAGGCAACGGCAGACTTTGGAGCTATTATTATTACCAAGACT GACGGTCATGCCGCCGGTGGTGGTGCCATTTCCGCTGTCGCCGCGACGCACACTCCTATTATCTTCCTTGGTACT GGTGAGCACATGATGGACCTAGAGCGATTCGAGCCCCGCGCGTTTGTTCAGAAGCTACTAGGCATGGGCGATGTC GCCGGGCTGGTCGAGCATGTACAGGCCATGACAAAGGATTCCGCGGGTGCCAAGGAGACATACAAGCACATTGCG GAAGGTATCTACACTCTGCGCGACTTCCGGGAGAACATCACCTCAATCATGAAGATGGGCCCGCTGTCTAAATTG TCCGGCATGATTCCCGGTCTGTCTAACATGACCCAGGGTCTGGATGACGAGGACGGCTCACTGAAGCTGCGCCGC ATGGTCTACATCTTCGACAGCATGACTGTAGCCGAGCTGGATGGCGACGGCAAGAACTTCGTCGAGCAGCCTAGC CGCATGGTCCGCATCGCGCACGGCAGCGGAACCAGCGTCCGTGAAGTTGAGGACGTGCTCTCCCAGCACCGCATG ATGGCCGGCATGGCCAAGCGTGTTGGCGGCCAGAAGAAGCAGATGCAACAAGCTCAGAACATGATGAAGGGCGGA AACAAGAACCAGCAGATGGCTGCCATGCAGAAGCGCATGGCGTCGATGGGCGGTGCCGGCGGCGGTGGCATGCCC GGTATGCCCGATATGGCCAAGATGATGCAGATGATGGGAGGTGGCGGTGGCGGCATGCCGGATATGCAGAGCCTA ATGAGCCAAATGGGCGGGTTGATGGGTGGAATGGGAGGAGGTGGTGGTGGACGTGGAAGAGGACGTTAA
Transcript	>Pro_DTO377G3_2\|g3516.t1 ATGGTTCTTCAAGACCTTGGGCGGCGAATCAACTCCGCTGTCAATGACCTGACGAGGTCCAGTAACCTCGATGAG AAGGCCTTCGATGACATGCTCAAAGAAATTTGCGCCGCTCTTCTTTCCGCCGATGTCAACGTCCGTCTCGTTGGA ACCCTACGCAAATCGATCAAGGCTAGCGTAAACTTCGCATCGCTCCCAGCCGCAGTGAACAAGAAGCGACTGATC CAGAAGACCGTCTTCGACGAGCTCGTAAAATTGGTGGACCCGCGTGCAGACTCCTTCCGGCCGAAGAAGGGTCGC TCCAATGTGATCATGTTCGTCGGTTTGCAGGGTGCGGGTAAGACAACAACGTGTACAAAGCTGGCTCGGCACTAC CAGACGCGAGGATTCAAAACAGCGCTGGTTTGCGCAGATACCTTCCGTGCCGGTGCTTTTGATCAGCTGAAACAG AACGCTACCAAGGCCAAGATCCCATACTATGGTAGTCTGACGCAGACGGATCCTGCTGTCGTGGCCGCGGAGGGT GTGGCCAAGTTTAAGAAAGAGCGTTTCGATATCATCATTGTCGATACCAGTGGTCGCCACCGACAAGAGGAGGAG CTCTTCACGGAAATGACACAAATTCAGAATGCTGTAACACCAGATCAGACTATTCTCGTGCTCGACAGCACAATT GGTCAATCTGCCGAGGCTCAGTCCGCTGCGTTCAAGGCAACGGCAGACTTTGGAGCTATTATTATTACCAAGACT GACGGTCATGCCGCCGGTGGTGGTGCCATTTCCGCTGTCGCCGCGACGCACACTCCTATTATCTTCCTTGGTACT GGTGAGCACATGATGGACCTAGAGCGATTCGAGCCCCGCGCGTTTGTTCAGAAGCTACTAGGCATGGGCGATGTC GCCGGGCTGGTCGAGCATGTACAGGCCATGACAAAGGATTCCGCGGGTGCCAAGGAGACATACAAGCACATTGCG GAAGGTATCTACACTCTGCGCGACTTCCGGGAGAACATCACCTCAATCATGAAGATGGGCCCGCTGTCTAAATTG TCCGGCATGATTCCCGGTCTGTCTAACATGACCCAGGGTCTGGATGACGAGGACGGCTCACTGAAGCTGCGCCGC ATGGTCTACATCTTCGACAGCATGACTGTAGCCGAGCTGGATGGCGACGGCAAGAACTTCGTCGAGCAGCCTAGC CGCATGGTCCGCATCGCGCACGGCAGCGGAACCAGCGTCCGTGAAGTTGAGGACGTGCTCTCCCAGCACCGCATG ATGGCCGGCATGGCCAAGCGTGTTGGCGGCCAGAAGAAGCAGATGCAACAAGCTCAGAACATGATGAAGGGCGGA AACAAGAACCAGCAGATGGCTGCCATGCAGAAGCGCATGGCGTCGATGGGCGGTGCCGGCGGCGGTGGCATGCCC GGTATGCCCGATATGGCCAAGATGATGCAGATGATGGGAGGTGGCGGTGGCGGCATGCCGGATATGCAGAGCCTA ATGAGCCAAATGGGCGGGTTGATGGGTGGAATGGGAGGAGGTGGTGGTGGACGTGGAAGAGGACGTTAA
Gene	>Pro_DTO377G3_2\|g3516.t1 ATGGTTCTTCAAGACCTTGGGCGGCGAATCAACTCCGCTGTCAATGACCTGACGAGGTCCAGTAACCTCGATGAG AAGGTATGCTATGTGTCCAGTGTGGCCCATAAGCCAGCCCGCTAATATAACAACAGGCCTTCGATGACATGCTCA AAGAAATTTGCGCCGCTCTTCTTTCCGCCGATGTCAACGTCCGTCTCGTTGGAACCCTACGCAAATCGATCAAGG CTAGCGTAAACTTCGCATCGCTCCCAGCCGCAGTGAACAAGAAGCGACTGATCCAGAAGACCGTCTTCGACGAGC TCGTAAAATTGGTGGACCCGCGTGCAGACTCCTTCCGGCCGAAGAAGGGTCGCTCCAATGTGATCATGTTCGTCG GTTTGCAGGGTGCGGGTAAGACAACAACGTGTACAAAGCTGGCTCGGCACTACCAGACGCGAGGATTCAAAACAG CGCTGGTTTGCGCAGATACCTTCCGTGCCGGTGCTTTTGATCAGCTGAAACAGAACGCTACCAAGGCCAAGATCC CATACTATGGTAGTCTGACGCAGACGGATCCTGCTGTCGTGGCCGCGGAGGGTGTGGCCAAGTTTAAGAAAGAGC GTTTCGATATCATCATTGTCGATACCAGTGGTCGCCACCGACAAGAGGAGGAGCTCTTCACGGAAATGACACAAA TTCAGAATGCTGTAACACCAGATCAGACTATTCTCGTGCTCGACAGCACAATTGGTCAATCTGCCGAGGCTCAGT CCGCTGCGTTCAAGGCAACGGCAGACTTTGGAGCTATTATTATTACCAAGACTGACGGTCATGCCGCCGGTGGTG GTGCCATTTCCGCTGTCGCCGCGACGCACACTCCTATTATCTTCCTTGGTACTGGTGAGCACATGATGGACCTAG AGCGATTCGAGCCCCGCGCGTTTGTTCAGAAGCTACTAGGCATGGGCGATGTCGCCGGGCTGGTCGAGCATGTAC AGGCCATGACAAAGGATTCCGCGGGTGCCAAGGAGACATACAAGCACATTGCGGAAGGTATCTACACTCTGCGCG ACTTCCGGGAGAACATCACCTCAATCATGAAGATGGGCCCGCTGTCTAAATTGTCCGGCATGATTCCCGGTCTGT CTAACATGACCCAGGGTCTGGATGACGAGGACGGCTCACTGAAGCTGCGCCGCATGGTCTACATCTTCGACAGCA TGACTGTAGCCGAGCTGGATGGCGACGGCAAGAACTTCGTCGAGCAGCCTAGCCGCATGGTCCGCATCGCGCACG GCAGCGGAACCAGCGTCCGTGAAGTTGAGGACGTGCTCTCCCAGCACCGCATGATGGCCGGCATGGCCAAGCGTG TTGGCGGCCAGAAGAAGCAGATGCAACAAGCTCAGAACATGATGAAGGGCGGAAACAAGAACCAGCAGATGGCTG CCATGCAGAAGCGCATGGCGTCGATGGGCGGTGCCGGCGGCGGTGGCATGCCCGGTATGCCCGATATGGCCAAGA TGATGCAGATGATGGGAGGTGGCGGTGGCGGCATGCCGGATATGCAGAGCCTAATGAGCCAAATGGGCGGGTTGA TGGGTGGAATGGGAGGAGGTGGTGGTGGACGTGGAAGAGGACGTTAA

Fungal Genomics

General Properties

PFAM Domains

GO

SignalP

Transmembrane Domains

Transcription Factor Class

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Sequences