© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3511.t1 |
| Gene name | |
| Location | scaffold_05:862599..863993 |
| Strand | + |
| Gene length (bp) | 1394 |
| Transcript length (bp) | 1158 |
| Coding sequence length (bp) | 1158 |
| Protein length (aa) | 386 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 64 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 28 | 47 | 19 |
| 2 | 62 | 84 | 22 |
| 3 | 105 | 127 | 22 |
| 4 | 137 | 159 | 22 |
| 5 | 180 | 202 | 22 |
| 6 | 217 | 239 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 3.56 | 0.73 | 6.39 |
| 5d_25C | Five days - 25 degrees Celsius | 3.24 | 0.69 | 5.78 |
| 7d_25C | Seven days - 25 degrees Celsius | 2.72 | 0.47 | 4.97 |
| 10d_25C | Ten days - 25 degrees Celsius | 1.91 | 0.08 | 3.73 |
| 7d_15C | Seven days - 15 degrees Celsius | 5.67 | 1.56 | 9.78 |
| 7d_30C | Seven days - 30 degrees Celsius | 3.25 | 0.70 | 5.80 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.884496 | no |
| 3d_25C | 7d_25C | 0.628413 | no |
| 3d_25C | 7d_15C | 0.322146 | no |
| 3d_25C | 7d_30C | 0.891107 | no |
| 3d_25C | 10d_25C | 0.239033 | no |
| 5d_25C | 7d_25C | 0.772701 | no |
| 5d_25C | 7d_15C | 0.201864 | no |
| 5d_25C | 7d_30C | 0.995636 | no |
| 5d_25C | 10d_25C | 0.328059 | no |
| 7d_25C | 7d_15C | 0.075626 | no |
| 7d_25C | 7d_30C | 0.762269 | no |
| 7d_25C | 10d_25C | 0.542135 | no |
| 7d_15C | 7d_30C | 0.205431 | no |
| 7d_15C | 10d_25C | 0.025611 | yes |
| 7d_30C | 10d_25C | 0.328200 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3511.t1 MNLLYIRDAIFRRDDDGILMSSRGEQGLIISVVFTVLATCFVMMRMYTRMKLMNRVEANDWMVIIALVNSYVFMG LDIIEAVSGMGVHFKDIPPNIFERQMKAFWLTIPFYNAAVLCAKASILMQYFRVFPTHRMRVVCWIMITILAVYG TWAVISAFLNCIPVAKFWDDSIQGFCLNKTNLWFSNASMHISTDVAILIIPIPALMAVDLPRKQKVALMIMFALG GFVCVTSIIRLVSLKQIAESSDPTYDNVGAASWSAIECNTGIICACLPTLKPLVARIFPGMISTFNASRPARGDT TRRNSDWNCDASTLGAPGEEHEYGAGDPERVLALVPRTSFRSSIKRWTREEDKKLTGIISAPRPLSRPNTLTHPR PLPADLAVPF* |
| Coding | >Pro_DTO377G3_2|g3511.t1 ATGAATCTATTGTACATTCGAGATGCGATCTTCAGGCGAGATGATGACGGCATACTTATGTCCTCCCGAGGCGAG CAGGGCTTGATTATAAGCGTTGTGTTCACGGTCTTGGCAACCTGCTTCGTGATGATGAGGATGTATACTCGTATG AAACTTATGAACCGAGTGGAAGCAAATGACTGGATGGTTATTATCGCACTGGTGAATTCATATGTCTTCATGGGC CTCGACATTATCGAAGCCGTCAGTGGCATGGGAGTGCATTTCAAAGATATCCCACCAAACATTTTCGAGAGACAG ATGAAGGCCTTCTGGCTCACCATTCCTTTCTACAACGCCGCCGTCCTCTGCGCCAAAGCCTCAATTCTGATGCAG TACTTTCGAGTCTTCCCAACGCACCGCATGCGCGTCGTATGTTGGATCATGATCACCATCCTCGCCGTCTATGGC ACATGGGCGGTGATCAGTGCATTCCTCAACTGCATTCCCGTGGCCAAATTCTGGGACGATTCAATACAAGGTTTC TGTTTGAACAAGACCAACCTGTGGTTCTCCAATGCTAGTATGCATATCTCAACCGATGTTGCTATCCTGATCATT CCCATCCCGGCTCTAATGGCAGTCGACTTACCTCGAAAACAAAAGGTCGCTTTAATGATCATGTTCGCCCTGGGT GGCTTTGTCTGCGTCACCAGTATCATCCGTCTAGTCAGCCTGAAACAAATCGCCGAATCATCCGATCCCACCTAC GACAACGTCGGCGCCGCCTCCTGGTCCGCCATAGAATGCAACACAGGCATAATATGCGCCTGCTTACCAACCCTA AAACCCCTCGTCGCCCGTATATTCCCAGGCATGATATCGACCTTCAATGCCAGCCGCCCCGCCCGCGGCGATACA ACCCGGCGCAACTCCGACTGGAACTGTGATGCATCAACCCTCGGCGCACCCGGCGAAGAACACGAGTATGGCGCC GGTGACCCGGAGCGCGTTCTCGCTCTTGTTCCTAGGACCAGCTTCAGATCTAGCATTAAGCGCTGGACGAGAGAG GAAGATAAGAAATTGACAGGGATTATCTCGGCTCCTCGGCCTCTGAGTCGGCCCAATACGCTGACGCATCCTCGT CCTTTGCCTGCGGATTTGGCGGTGCCGTTTTGA |
| Transcript | >Pro_DTO377G3_2|g3511.t1 ATGAATCTATTGTACATTCGAGATGCGATCTTCAGGCGAGATGATGACGGCATACTTATGTCCTCCCGAGGCGAG CAGGGCTTGATTATAAGCGTTGTGTTCACGGTCTTGGCAACCTGCTTCGTGATGATGAGGATGTATACTCGTATG AAACTTATGAACCGAGTGGAAGCAAATGACTGGATGGTTATTATCGCACTGGTGAATTCATATGTCTTCATGGGC CTCGACATTATCGAAGCCGTCAGTGGCATGGGAGTGCATTTCAAAGATATCCCACCAAACATTTTCGAGAGACAG ATGAAGGCCTTCTGGCTCACCATTCCTTTCTACAACGCCGCCGTCCTCTGCGCCAAAGCCTCAATTCTGATGCAG TACTTTCGAGTCTTCCCAACGCACCGCATGCGCGTCGTATGTTGGATCATGATCACCATCCTCGCCGTCTATGGC ACATGGGCGGTGATCAGTGCATTCCTCAACTGCATTCCCGTGGCCAAATTCTGGGACGATTCAATACAAGGTTTC TGTTTGAACAAGACCAACCTGTGGTTCTCCAATGCTAGTATGCATATCTCAACCGATGTTGCTATCCTGATCATT CCCATCCCGGCTCTAATGGCAGTCGACTTACCTCGAAAACAAAAGGTCGCTTTAATGATCATGTTCGCCCTGGGT GGCTTTGTCTGCGTCACCAGTATCATCCGTCTAGTCAGCCTGAAACAAATCGCCGAATCATCCGATCCCACCTAC GACAACGTCGGCGCCGCCTCCTGGTCCGCCATAGAATGCAACACAGGCATAATATGCGCCTGCTTACCAACCCTA AAACCCCTCGTCGCCCGTATATTCCCAGGCATGATATCGACCTTCAATGCCAGCCGCCCCGCCCGCGGCGATACA ACCCGGCGCAACTCCGACTGGAACTGTGATGCATCAACCCTCGGCGCACCCGGCGAAGAACACGAGTATGGCGCC GGTGACCCGGAGCGCGTTCTCGCTCTTGTTCCTAGGACCAGCTTCAGATCTAGCATTAAGCGCTGGACGAGAGAG GAAGATAAGAAATTGACAGGGATTATCTCGGCTCCTCGGCCTCTGAGTCGGCCCAATACGCTGACGCATCCTCGT CCTTTGCCTGCGGATTTGGCGGTGCCGTTTTGA |
| Gene | >Pro_DTO377G3_2|g3511.t1 ATGAATCTATTGTACATTCGAGATGCGATCTTCAGGCGAGATGATGACGGCATACTTATGTCCTCCCGAGGCGAG CAGGGCTTGATTATAAGCGTTGTGTTCACGGTCTTGGCAACCTGCTTCGTGATGATGAGGATGTATACTCGTATG AAACTTATGAACCGAGTGGAAGCAAATGACTGGATGGTTATTATCGCACTGGTGGGTTGGTTGATTGGTACTGAT ATCAAAGGACTCCAGATACTGATGCAGATGTATAGGTGAATTCATATGTCTTCATGGGCCTCGACATTATCGAAG CCGTCAGTGGCATGGGAGTGCATTTCAAAGATATCCCACCAAACATTTTCGAGAGACAGATGAAGGTGAGCTTGC CCTAAGCCGGGTCATTAGCTGTCAACTGCATCTAACAAACAATCCGAATAGGCCTTCTGGCTCACCATTCCTTTC TACAACGCCGCCGTCCTCTGCGCCAAAGCCTCAATTCTGATGCAGTACTTTCGAGTCTTCCCAACGCACCGCATG CGCGTCGTATGTTGGATCATGATCACCATCCTCGCCGTCTATGGCACATGGGCGGTGATCAGTGCATTCCTCAAC TGCATTCCCGTGGCCAAATTCTGGGACGATTCAATACAAGGTTTCTGTTTGAACAAGACCAACCTGTGGTTCTCC AATGCTAGTATGCATATCTCAACCGATGTTGCTATCCTGATCATTCCCATCCCGGCTCTAATGGCAGTCGACTTA CCTCGAAAACAAAAGGTCGCTTTAATGATCATGTTCGCCCTGGGTGGCTTGTGAGTTACCCTGTTCCAAACATCA TCTTTTCCCACGACTAACATAACATCCACTAGTGTCTGCGTCACCAGTATCATCCGTCTAGTCAGCCTGAAACAA ATCGCCGAATCATCCGATCCCACCTGTACGTATCGTACCGCTCAGCCCTATCATCCCAAAAACCAAGCTAACCCC ACAAACTAGACGACAACGTCGGCGCCGCCTCCTGGTCCGCCATAGAATGCAACACAGGCATAATATGCGCCTGCT TACCAACCCTAAAACCCCTCGTCGCCCGTATATTCCCAGGCATGATATCGACCTTCAATGCCAGCCGCCCCGCCC GCGGCGATACAACCCGGCGCAACTCCGACTGGAACTGTGATGCATCAACCCTCGGCGCACCCGGCGAAGAACACG AGTATGGCGCCGGTGACCCGGAGCGCGTTCTCGCTCTTGTTCCTAGGACCAGCTTCAGATCTAGCATTAAGCGCT GGACGAGAGAGGAAGATAAGAAATTGACAGGGATTATCTCGGCTCCTCGGCCTCTGAGTCGGCCCAATACGCTGA CGCATCCTCGTCCTTTGCCTGCGGATTTGGCGGTGCCGTTTTGA |