Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g3511.t1
Gene name
Locationscaffold_05:862599..863993
Strand+
Gene length (bp)1394
Transcript length (bp)1158
Coding sequence length (bp)1158
Protein length (aa) 386

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PFAM Domains

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 64 0.5

Transmembrane Domains

Domain # Start End Length
1 28 47 19
2 62 84 22
3 105 127 22
4 137 159 22
5 180 202 22
6 217 239 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 3.56 0.73 6.39
5d_25C Five days - 25 degrees Celsius 3.24 0.69 5.78
7d_25C Seven days - 25 degrees Celsius 2.72 0.47 4.97
10d_25C Ten days - 25 degrees Celsius 1.91 0.08 3.73
7d_15C Seven days - 15 degrees Celsius 5.67 1.56 9.78
7d_30C Seven days - 30 degrees Celsius 3.25 0.70 5.80

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.884496 no
3d_25C 7d_25C 0.628413 no
3d_25C 7d_15C 0.322146 no
3d_25C 7d_30C 0.891107 no
3d_25C 10d_25C 0.239033 no
5d_25C 7d_25C 0.772701 no
5d_25C 7d_15C 0.201864 no
5d_25C 7d_30C 0.995636 no
5d_25C 10d_25C 0.328059 no
7d_25C 7d_15C 0.075626 no
7d_25C 7d_30C 0.762269 no
7d_25C 10d_25C 0.542135 no
7d_15C 7d_30C 0.205431 no
7d_15C 10d_25C 0.025611 yes
7d_30C 10d_25C 0.328200 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g3511.t1
MNLLYIRDAIFRRDDDGILMSSRGEQGLIISVVFTVLATCFVMMRMYTRMKLMNRVEANDWMVIIALVNSYVFMG
LDIIEAVSGMGVHFKDIPPNIFERQMKAFWLTIPFYNAAVLCAKASILMQYFRVFPTHRMRVVCWIMITILAVYG
TWAVISAFLNCIPVAKFWDDSIQGFCLNKTNLWFSNASMHISTDVAILIIPIPALMAVDLPRKQKVALMIMFALG
GFVCVTSIIRLVSLKQIAESSDPTYDNVGAASWSAIECNTGIICACLPTLKPLVARIFPGMISTFNASRPARGDT
TRRNSDWNCDASTLGAPGEEHEYGAGDPERVLALVPRTSFRSSIKRWTREEDKKLTGIISAPRPLSRPNTLTHPR
PLPADLAVPF*
Coding >Pro_DTO377G3_2|g3511.t1
ATGAATCTATTGTACATTCGAGATGCGATCTTCAGGCGAGATGATGACGGCATACTTATGTCCTCCCGAGGCGAG
CAGGGCTTGATTATAAGCGTTGTGTTCACGGTCTTGGCAACCTGCTTCGTGATGATGAGGATGTATACTCGTATG
AAACTTATGAACCGAGTGGAAGCAAATGACTGGATGGTTATTATCGCACTGGTGAATTCATATGTCTTCATGGGC
CTCGACATTATCGAAGCCGTCAGTGGCATGGGAGTGCATTTCAAAGATATCCCACCAAACATTTTCGAGAGACAG
ATGAAGGCCTTCTGGCTCACCATTCCTTTCTACAACGCCGCCGTCCTCTGCGCCAAAGCCTCAATTCTGATGCAG
TACTTTCGAGTCTTCCCAACGCACCGCATGCGCGTCGTATGTTGGATCATGATCACCATCCTCGCCGTCTATGGC
ACATGGGCGGTGATCAGTGCATTCCTCAACTGCATTCCCGTGGCCAAATTCTGGGACGATTCAATACAAGGTTTC
TGTTTGAACAAGACCAACCTGTGGTTCTCCAATGCTAGTATGCATATCTCAACCGATGTTGCTATCCTGATCATT
CCCATCCCGGCTCTAATGGCAGTCGACTTACCTCGAAAACAAAAGGTCGCTTTAATGATCATGTTCGCCCTGGGT
GGCTTTGTCTGCGTCACCAGTATCATCCGTCTAGTCAGCCTGAAACAAATCGCCGAATCATCCGATCCCACCTAC
GACAACGTCGGCGCCGCCTCCTGGTCCGCCATAGAATGCAACACAGGCATAATATGCGCCTGCTTACCAACCCTA
AAACCCCTCGTCGCCCGTATATTCCCAGGCATGATATCGACCTTCAATGCCAGCCGCCCCGCCCGCGGCGATACA
ACCCGGCGCAACTCCGACTGGAACTGTGATGCATCAACCCTCGGCGCACCCGGCGAAGAACACGAGTATGGCGCC
GGTGACCCGGAGCGCGTTCTCGCTCTTGTTCCTAGGACCAGCTTCAGATCTAGCATTAAGCGCTGGACGAGAGAG
GAAGATAAGAAATTGACAGGGATTATCTCGGCTCCTCGGCCTCTGAGTCGGCCCAATACGCTGACGCATCCTCGT
CCTTTGCCTGCGGATTTGGCGGTGCCGTTTTGA
Transcript >Pro_DTO377G3_2|g3511.t1
ATGAATCTATTGTACATTCGAGATGCGATCTTCAGGCGAGATGATGACGGCATACTTATGTCCTCCCGAGGCGAG
CAGGGCTTGATTATAAGCGTTGTGTTCACGGTCTTGGCAACCTGCTTCGTGATGATGAGGATGTATACTCGTATG
AAACTTATGAACCGAGTGGAAGCAAATGACTGGATGGTTATTATCGCACTGGTGAATTCATATGTCTTCATGGGC
CTCGACATTATCGAAGCCGTCAGTGGCATGGGAGTGCATTTCAAAGATATCCCACCAAACATTTTCGAGAGACAG
ATGAAGGCCTTCTGGCTCACCATTCCTTTCTACAACGCCGCCGTCCTCTGCGCCAAAGCCTCAATTCTGATGCAG
TACTTTCGAGTCTTCCCAACGCACCGCATGCGCGTCGTATGTTGGATCATGATCACCATCCTCGCCGTCTATGGC
ACATGGGCGGTGATCAGTGCATTCCTCAACTGCATTCCCGTGGCCAAATTCTGGGACGATTCAATACAAGGTTTC
TGTTTGAACAAGACCAACCTGTGGTTCTCCAATGCTAGTATGCATATCTCAACCGATGTTGCTATCCTGATCATT
CCCATCCCGGCTCTAATGGCAGTCGACTTACCTCGAAAACAAAAGGTCGCTTTAATGATCATGTTCGCCCTGGGT
GGCTTTGTCTGCGTCACCAGTATCATCCGTCTAGTCAGCCTGAAACAAATCGCCGAATCATCCGATCCCACCTAC
GACAACGTCGGCGCCGCCTCCTGGTCCGCCATAGAATGCAACACAGGCATAATATGCGCCTGCTTACCAACCCTA
AAACCCCTCGTCGCCCGTATATTCCCAGGCATGATATCGACCTTCAATGCCAGCCGCCCCGCCCGCGGCGATACA
ACCCGGCGCAACTCCGACTGGAACTGTGATGCATCAACCCTCGGCGCACCCGGCGAAGAACACGAGTATGGCGCC
GGTGACCCGGAGCGCGTTCTCGCTCTTGTTCCTAGGACCAGCTTCAGATCTAGCATTAAGCGCTGGACGAGAGAG
GAAGATAAGAAATTGACAGGGATTATCTCGGCTCCTCGGCCTCTGAGTCGGCCCAATACGCTGACGCATCCTCGT
CCTTTGCCTGCGGATTTGGCGGTGCCGTTTTGA
Gene >Pro_DTO377G3_2|g3511.t1
ATGAATCTATTGTACATTCGAGATGCGATCTTCAGGCGAGATGATGACGGCATACTTATGTCCTCCCGAGGCGAG
CAGGGCTTGATTATAAGCGTTGTGTTCACGGTCTTGGCAACCTGCTTCGTGATGATGAGGATGTATACTCGTATG
AAACTTATGAACCGAGTGGAAGCAAATGACTGGATGGTTATTATCGCACTGGTGGGTTGGTTGATTGGTACTGAT
ATCAAAGGACTCCAGATACTGATGCAGATGTATAGGTGAATTCATATGTCTTCATGGGCCTCGACATTATCGAAG
CCGTCAGTGGCATGGGAGTGCATTTCAAAGATATCCCACCAAACATTTTCGAGAGACAGATGAAGGTGAGCTTGC
CCTAAGCCGGGTCATTAGCTGTCAACTGCATCTAACAAACAATCCGAATAGGCCTTCTGGCTCACCATTCCTTTC
TACAACGCCGCCGTCCTCTGCGCCAAAGCCTCAATTCTGATGCAGTACTTTCGAGTCTTCCCAACGCACCGCATG
CGCGTCGTATGTTGGATCATGATCACCATCCTCGCCGTCTATGGCACATGGGCGGTGATCAGTGCATTCCTCAAC
TGCATTCCCGTGGCCAAATTCTGGGACGATTCAATACAAGGTTTCTGTTTGAACAAGACCAACCTGTGGTTCTCC
AATGCTAGTATGCATATCTCAACCGATGTTGCTATCCTGATCATTCCCATCCCGGCTCTAATGGCAGTCGACTTA
CCTCGAAAACAAAAGGTCGCTTTAATGATCATGTTCGCCCTGGGTGGCTTGTGAGTTACCCTGTTCCAAACATCA
TCTTTTCCCACGACTAACATAACATCCACTAGTGTCTGCGTCACCAGTATCATCCGTCTAGTCAGCCTGAAACAA
ATCGCCGAATCATCCGATCCCACCTGTACGTATCGTACCGCTCAGCCCTATCATCCCAAAAACCAAGCTAACCCC
ACAAACTAGACGACAACGTCGGCGCCGCCTCCTGGTCCGCCATAGAATGCAACACAGGCATAATATGCGCCTGCT
TACCAACCCTAAAACCCCTCGTCGCCCGTATATTCCCAGGCATGATATCGACCTTCAATGCCAGCCGCCCCGCCC
GCGGCGATACAACCCGGCGCAACTCCGACTGGAACTGTGATGCATCAACCCTCGGCGCACCCGGCGAAGAACACG
AGTATGGCGCCGGTGACCCGGAGCGCGTTCTCGCTCTTGTTCCTAGGACCAGCTTCAGATCTAGCATTAAGCGCT
GGACGAGAGAGGAAGATAAGAAATTGACAGGGATTATCTCGGCTCCTCGGCCTCTGAGTCGGCCCAATACGCTGA
CGCATCCTCGTCCTTTGCCTGCGGATTTGGCGGTGCCGTTTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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