© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g351.t1 |
| Gene name | |
| Location | scaffold_01:886280..887411 |
| Strand | + |
| Gene length (bp) | 1131 |
| Transcript length (bp) | 1131 |
| Coding sequence length (bp) | 1131 |
| Protein length (aa) | 377 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04757 | Pex2_Pex12 | Pex2 / Pex12 amino terminal region | 3.1E-46 | 40 | 261 |
| PF13923 | zf-C3HC4_2 | Zinc finger, C3HC4 type (RING finger) | 1.1E-11 | 324 | 362 |
| PF13639 | zf-RING_2 | Ring finger domain | 1.3E-09 | 324 | 363 |
| PF13920 | zf-C3HC4_3 | Zinc finger, C3HC4 type (RING finger) | 8.7E-10 | 322 | 366 |
| PF00097 | zf-C3HC4 | Zinc finger, C3HC4 type (RING finger) | 9.7E-10 | 325 | 362 |
| PF13445 | zf-RING_UBOX | RING-type zinc-finger | 6.9E-08 | 325 | 360 |
| PF14634 | zf-RING_5 | zinc-RING finger domain | 1.3E-06 | 324 | 364 |
| PF14447 | Prok-RING_4 | Prokaryotic RING finger family 4 | 2.6E-06 | 325 | 366 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0046872 | metal ion binding | Yes |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:0043169 | cation binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 194 | 216 | 22 |
| 2 | 237 | 256 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g351.t1 MADDDSHLSLSTPNSALGSSTSHFYPFATSPDIIRSHEKDSFLTGSLIQQSQGIVRALRGARYAHTHSDAIKHLT ELLYFSLTTAIGNRTLGEEYCDLVQLEDDTLQLPSIGRRVGYFLSSILVPWTLQRLLPALRQRIRNKLERNIARQ QSRAAQQAGLLNKPQFSTTPTKRPLFTKLRIQQYVLEHLDSITSLSPIYALSIATFYFTGSYYHISKRIWSLRYV FTKKIDDNEQRIGYEVLGVLLVLQIAVQGFLHARKLAASMNEDESESTDAGQSPSQGGAVLASIQNPSSIPLLPA SVPLYDLEEDPGAVSWIPEGQQRKCTLCLEMFKDPSVTTCGHVFCWICVRDWVREKPECPLCRQEVLLSKVLPLR G* |
| Coding | >Pro_DTO377G3_2|g351.t1 ATGGCCGACGACGACTCCCATCTCTCTCTATCAACCCCGAACTCAGCCCTCGGCTCCTCTACCTCTCACTTCTAC CCTTTCGCAACCTCACCAGACATCATCCGCTCGCATGAGAAGGATTCATTCCTTACGGGCAGTCTAATTCAACAA TCTCAAGGGATCGTTCGTGCTCTCCGCGGCGCCCGATACGCCCACACCCACTCCGACGCCATCAAACACCTCACA GAACTCCTCTACTTCTCCCTAACAACCGCCATCGGCAACCGCACCCTAGGCGAAGAATACTGCGACCTCGTACAG CTAGAAGATGACACACTTCAATTGCCGTCAATTGGCCGTCGCGTGGGGTACTTCTTAAGCAGCATTCTAGTACCG TGGACACTGCAGCGGCTACTACCTGCATTGCGACAGAGGATCCGCAACAAGCTCGAGCGCAACATTGCACGCCAA CAGTCACGAGCGGCGCAGCAGGCTGGCCTGCTCAACAAGCCCCAGTTCTCAACCACCCCGACTAAACGGCCGTTG TTTACGAAACTGCGCATCCAGCAGTATGTCCTTGAACACCTGGACTCCATCACATCCTTGTCGCCCATTTATGCG CTGAGTATTGCCACCTTCTATTTCACAGGCTCGTACTACCACATCTCCAAGCGGATTTGGAGCCTTCGTTACGTT TTCACGAAAAAGATCGACGACAATGAGCAGCGCATCGGATATGAGGTTCTGGGTGTGTTGCTTGTTCTCCAAATC GCCGTGCAGGGATTCCTGCACGCCCGCAAACTCGCCGCGAGCATGAATGAAGATGAGAGCGAGTCTACAGACGCT GGTCAGTCTCCCTCGCAGGGTGGAGCTGTTCTCGCTTCGATTCAGAACCCGTCCTCTATTCCTCTCCTTCCTGCG TCTGTGCCTCTGTATGATCTCGAGGAGGATCCTGGCGCTGTCTCATGGATTCCCGAGGGTCAGCAGCGGAAGTGC ACCCTGTGTCTGGAAATGTTCAAGGACCCTAGTGTTACAACCTGTGGACATGTCTTTTGCTGGATTTGTGTTCGG GACTGGGTTCGTGAAAAGCCCGAGTGCCCGCTCTGTCGGCAAGAGGTCTTGCTATCTAAGGTGCTTCCTCTAAGA GGGTAG |
| Transcript | >Pro_DTO377G3_2|g351.t1 ATGGCCGACGACGACTCCCATCTCTCTCTATCAACCCCGAACTCAGCCCTCGGCTCCTCTACCTCTCACTTCTAC CCTTTCGCAACCTCACCAGACATCATCCGCTCGCATGAGAAGGATTCATTCCTTACGGGCAGTCTAATTCAACAA TCTCAAGGGATCGTTCGTGCTCTCCGCGGCGCCCGATACGCCCACACCCACTCCGACGCCATCAAACACCTCACA GAACTCCTCTACTTCTCCCTAACAACCGCCATCGGCAACCGCACCCTAGGCGAAGAATACTGCGACCTCGTACAG CTAGAAGATGACACACTTCAATTGCCGTCAATTGGCCGTCGCGTGGGGTACTTCTTAAGCAGCATTCTAGTACCG TGGACACTGCAGCGGCTACTACCTGCATTGCGACAGAGGATCCGCAACAAGCTCGAGCGCAACATTGCACGCCAA CAGTCACGAGCGGCGCAGCAGGCTGGCCTGCTCAACAAGCCCCAGTTCTCAACCACCCCGACTAAACGGCCGTTG TTTACGAAACTGCGCATCCAGCAGTATGTCCTTGAACACCTGGACTCCATCACATCCTTGTCGCCCATTTATGCG CTGAGTATTGCCACCTTCTATTTCACAGGCTCGTACTACCACATCTCCAAGCGGATTTGGAGCCTTCGTTACGTT TTCACGAAAAAGATCGACGACAATGAGCAGCGCATCGGATATGAGGTTCTGGGTGTGTTGCTTGTTCTCCAAATC GCCGTGCAGGGATTCCTGCACGCCCGCAAACTCGCCGCGAGCATGAATGAAGATGAGAGCGAGTCTACAGACGCT GGTCAGTCTCCCTCGCAGGGTGGAGCTGTTCTCGCTTCGATTCAGAACCCGTCCTCTATTCCTCTCCTTCCTGCG TCTGTGCCTCTGTATGATCTCGAGGAGGATCCTGGCGCTGTCTCATGGATTCCCGAGGGTCAGCAGCGGAAGTGC ACCCTGTGTCTGGAAATGTTCAAGGACCCTAGTGTTACAACCTGTGGACATGTCTTTTGCTGGATTTGTGTTCGG GACTGGGTTCGTGAAAAGCCCGAGTGCCCGCTCTGTCGGCAAGAGGTCTTGCTATCTAAGGTGCTTCCTCTAAGA GGGTAG |
| Gene | >Pro_DTO377G3_2|g351.t1 ATGGCCGACGACGACTCCCATCTCTCTCTATCAACCCCGAACTCAGCCCTCGGCTCCTCTACCTCTCACTTCTAC CCTTTCGCAACCTCACCAGACATCATCCGCTCGCATGAGAAGGATTCATTCCTTACGGGCAGTCTAATTCAACAA TCTCAAGGGATCGTTCGTGCTCTCCGCGGCGCCCGATACGCCCACACCCACTCCGACGCCATCAAACACCTCACA GAACTCCTCTACTTCTCCCTAACAACCGCCATCGGCAACCGCACCCTAGGCGAAGAATACTGCGACCTCGTACAG CTAGAAGATGACACACTTCAATTGCCGTCAATTGGCCGTCGCGTGGGGTACTTCTTAAGCAGCATTCTAGTACCG TGGACACTGCAGCGGCTACTACCTGCATTGCGACAGAGGATCCGCAACAAGCTCGAGCGCAACATTGCACGCCAA CAGTCACGAGCGGCGCAGCAGGCTGGCCTGCTCAACAAGCCCCAGTTCTCAACCACCCCGACTAAACGGCCGTTG TTTACGAAACTGCGCATCCAGCAGTATGTCCTTGAACACCTGGACTCCATCACATCCTTGTCGCCCATTTATGCG CTGAGTATTGCCACCTTCTATTTCACAGGCTCGTACTACCACATCTCCAAGCGGATTTGGAGCCTTCGTTACGTT TTCACGAAAAAGATCGACGACAATGAGCAGCGCATCGGATATGAGGTTCTGGGTGTGTTGCTTGTTCTCCAAATC GCCGTGCAGGGATTCCTGCACGCCCGCAAACTCGCCGCGAGCATGAATGAAGATGAGAGCGAGTCTACAGACGCT GGTCAGTCTCCCTCGCAGGGTGGAGCTGTTCTCGCTTCGATTCAGAACCCGTCCTCTATTCCTCTCCTTCCTGCG TCTGTGCCTCTGTATGATCTCGAGGAGGATCCTGGCGCTGTCTCATGGATTCCCGAGGGTCAGCAGCGGAAGTGC ACCCTGTGTCTGGAAATGTTCAAGGACCCTAGTGTTACAACCTGTGGACATGTCTTTTGCTGGATTTGTGTTCGG GACTGGGTTCGTGAAAAGCCCGAGTGCCCGCTCTGTCGGCAAGAGGTCTTGCTATCTAAGGTGCTTCCTCTAAGA GGGTAG |