© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3491.t1 |
| Gene name | |
| Location | scaffold_05:808296..810023 |
| Strand | + |
| Gene length (bp) | 1727 |
| Transcript length (bp) | 1344 |
| Coding sequence length (bp) | 1344 |
| Protein length (aa) | 448 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00928 | Adap_comp_sub | Adaptor complexes medium subunit family | 5.3E-91 | 156 | 442 |
| PF01217 | Clat_adaptor_s | Clathrin adaptor complex small chain | 1.8E-08 | 3 | 131 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 18 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 81.51 | 49.47 | 113.55 |
| 5d_25C | Five days - 25 degrees Celsius | 66.30 | 40.06 | 92.54 |
| 7d_25C | Seven days - 25 degrees Celsius | 66.98 | 40.52 | 93.44 |
| 10d_25C | Ten days - 25 degrees Celsius | 62.46 | 37.45 | 87.47 |
| 7d_15C | Seven days - 15 degrees Celsius | 77.52 | 47.18 | 107.86 |
| 7d_30C | Seven days - 30 degrees Celsius | 62.75 | 37.63 | 87.87 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.403938 | no |
| 3d_25C | 7d_25C | 0.436249 | no |
| 3d_25C | 7d_15C | 0.879225 | no |
| 3d_25C | 7d_30C | 0.274443 | no |
| 3d_25C | 10d_25C | 0.260752 | no |
| 5d_25C | 7d_25C | 0.976742 | no |
| 5d_25C | 7d_15C | 0.555301 | no |
| 5d_25C | 7d_30C | 0.864341 | no |
| 5d_25C | 10d_25C | 0.851052 | no |
| 7d_25C | 7d_15C | 0.586997 | no |
| 7d_25C | 7d_30C | 0.834648 | no |
| 7d_25C | 10d_25C | 0.819975 | no |
| 7d_15C | 7d_30C | 0.392090 | no |
| 7d_15C | 10d_25C | 0.378459 | no |
| 7d_30C | 10d_25C | 0.989377 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3491.t1 MASALFFLDLKGKTLLARNYRGDIPMSAVEKFPILLSDAEEESSAVPPCFSHEGINYLYIRHSNLYILALTKRNT NATEILLFLHKLVEVFTEYFKVLEEESIRDNFVVIYELLDEMMDFGYPQTTESKILQEYITQESHKLDVQARPPI AVTNAVSWRSEGIRYRKNEVFLDVVESLNLLVSANGNVLRSEILGAVKMKCYLSGMPELRLGLNDKAMFETTGRA TRGKSVEMEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTQVKPLIWVECVVESHSGSRIEYMLKAKAQ FKRRSTANNVEILVPVPEDADSPRFRTNIGTVHYAPEKSAIIWKIKQFGGGKEFLMRAELGLPSVKGDDERGGGM TGGFGGSMGGAGGVGKSKRPINVKFEIPYFTTSGIQVRYLKITEPKLQYPSLPWVRYITQSGDIAMRMPEIQ* |
| Coding | >Pro_DTO377G3_2|g3491.t1 ATGGCGTCGGCACTCTTCTTCCTCGACCTCAAGGGCAAGACCCTACTGGCCCGCAATTACCGCGGAGATATTCCC ATGTCCGCAGTCGAGAAATTCCCTATCCTCCTCAGTGATGCCGAAGAAGAAAGCTCAGCAGTTCCTCCCTGTTTC TCTCACGAGGGAATCAATTACCTCTATATCCGCCACAGCAACCTCTATATCCTCGCATTGACCAAACGAAACACA AATGCCACCGAAATTCTACTCTTCCTCCACAAGCTGGTGGAGGTCTTCACCGAATATTTCAAGGTATTGGAGGAG GAGAGTATTCGGGATAACTTCGTCGTCATTTACGAATTACTGGATGAGATGATGGATTTTGGATACCCGCAGACA ACAGAGAGCAAGATTCTACAAGAATACATCACCCAAGAGTCACACAAGCTGGATGTCCAAGCACGGCCACCTATC GCTGTCACAAATGCTGTCTCCTGGCGCAGCGAGGGGATACGCTACCGCAAAAACGAAGTCTTCCTCGACGTGGTC GAGTCTCTCAATCTTCTCGTTTCAGCAAATGGAAACGTCCTGCGCTCTGAGATTCTGGGCGCTGTCAAGATGAAG TGCTACCTGAGTGGTATGCCAGAGTTGCGATTGGGCTTGAACGACAAAGCCATGTTCGAGACCACGGGTCGTGCT ACACGAGGCAAGTCGGTCGAGATGGAGGACGTGAAGTTCCACCAGTGTGTCCGACTTTCGCGCTTCGAGAATGAC CGCACAATCAGTTTCATCCCTCCGGACGGTGAATTCGAGCTCATGAGCTACCGACTGAACACACAAGTGAAGCCG TTGATCTGGGTGGAGTGCGTGGTTGAATCGCACTCGGGATCCCGAATTGAATATATGCTCAAGGCCAAAGCCCAA TTCAAACGCCGCAGTACCGCCAACAACGTGGAGATTCTCGTCCCCGTCCCCGAAGACGCCGACTCCCCGCGCTTC CGCACAAATATCGGAACCGTGCACTACGCTCCCGAGAAGTCCGCCATCATCTGGAAGATCAAGCAATTCGGCGGC GGCAAGGAATTCCTCATGCGCGCAGAGCTAGGTCTACCCTCTGTCAAGGGTGACGACGAGCGCGGCGGCGGTATG ACCGGTGGGTTCGGAGGCAGCATGGGCGGAGCCGGCGGCGTAGGCAAGTCGAAACGTCCCATCAACGTCAAGTTC GAGATCCCCTATTTCACGACCAGCGGCATCCAAGTGCGATATCTGAAGATCACCGAACCAAAGCTGCAATACCCC TCTCTCCCCTGGGTGCGATACATCACACAGTCGGGCGACATTGCCATGCGCATGCCAGAAATCCAATGA |
| Transcript | >Pro_DTO377G3_2|g3491.t1 ATGGCGTCGGCACTCTTCTTCCTCGACCTCAAGGGCAAGACCCTACTGGCCCGCAATTACCGCGGAGATATTCCC ATGTCCGCAGTCGAGAAATTCCCTATCCTCCTCAGTGATGCCGAAGAAGAAAGCTCAGCAGTTCCTCCCTGTTTC TCTCACGAGGGAATCAATTACCTCTATATCCGCCACAGCAACCTCTATATCCTCGCATTGACCAAACGAAACACA AATGCCACCGAAATTCTACTCTTCCTCCACAAGCTGGTGGAGGTCTTCACCGAATATTTCAAGGTATTGGAGGAG GAGAGTATTCGGGATAACTTCGTCGTCATTTACGAATTACTGGATGAGATGATGGATTTTGGATACCCGCAGACA ACAGAGAGCAAGATTCTACAAGAATACATCACCCAAGAGTCACACAAGCTGGATGTCCAAGCACGGCCACCTATC GCTGTCACAAATGCTGTCTCCTGGCGCAGCGAGGGGATACGCTACCGCAAAAACGAAGTCTTCCTCGACGTGGTC GAGTCTCTCAATCTTCTCGTTTCAGCAAATGGAAACGTCCTGCGCTCTGAGATTCTGGGCGCTGTCAAGATGAAG TGCTACCTGAGTGGTATGCCAGAGTTGCGATTGGGCTTGAACGACAAAGCCATGTTCGAGACCACGGGTCGTGCT ACACGAGGCAAGTCGGTCGAGATGGAGGACGTGAAGTTCCACCAGTGTGTCCGACTTTCGCGCTTCGAGAATGAC CGCACAATCAGTTTCATCCCTCCGGACGGTGAATTCGAGCTCATGAGCTACCGACTGAACACACAAGTGAAGCCG TTGATCTGGGTGGAGTGCGTGGTTGAATCGCACTCGGGATCCCGAATTGAATATATGCTCAAGGCCAAAGCCCAA TTCAAACGCCGCAGTACCGCCAACAACGTGGAGATTCTCGTCCCCGTCCCCGAAGACGCCGACTCCCCGCGCTTC CGCACAAATATCGGAACCGTGCACTACGCTCCCGAGAAGTCCGCCATCATCTGGAAGATCAAGCAATTCGGCGGC GGCAAGGAATTCCTCATGCGCGCAGAGCTAGGTCTACCCTCTGTCAAGGGTGACGACGAGCGCGGCGGCGGTATG ACCGGTGGGTTCGGAGGCAGCATGGGCGGAGCCGGCGGCGTAGGCAAGTCGAAACGTCCCATCAACGTCAAGTTC GAGATCCCCTATTTCACGACCAGCGGCATCCAAGTGCGATATCTGAAGATCACCGAACCAAAGCTGCAATACCCC TCTCTCCCCTGGGTGCGATACATCACACAGTCGGGCGACATTGCCATGCGCATGCCAGAAATCCAATGA |
| Gene | >Pro_DTO377G3_2|g3491.t1 ATGGCGTCGGCACTCTTCTTCCTCGACCTCAAGGGCAAGGTAGGCTATTGGAAACTGTGCAGAACAGGGCGATGC GACCCCCTGCCGGGAAAATCGTCAATGCGTCCAGGGACAAGCCCCCACTGACCATCTATAGACCCTACTGGCCCG CAATTACCGCGGAGATATTCCCATGTCCGCAGTCGAGAAATTCCCTATCCTCCTCAGTGATGCCGAAGAAGAAAG CTCAGCAGTTCCTCCCTGTTTCTCTCACGAGGGAATCAATGTGCGTCCCACCGAGCCTGGGCATTGCCCTGACCA CGCCCACTCCTGAGTGTCTCCTATTGTGCGCTCCCACGTACTGACACAGGGGTGTTTTCGTCTAGTACCTCTATA TCCGCCACAGCAACCTCTATATCCTCGCATTGACCAAACGAAACACAAATGCCACCGAAATTCTACTCTTCCTCC ACAAGCTGGTGGAGGTCTTCACCGAATATTTCAAGGTATTGGAGGAGGAGAGTATTCGGGATAACTTCGTCGTCA TTTACGAATTACTGGATGAGATGATGGATTTTGGATACCCGCAGACAACAGAGAGCAAGATTCTACAAGAGTAAG CAGCTGGGTCTGGTGCGGCGGGGGTGGTGATGAAACAGCATAACTAACAGACCTGCGCTATGACCAGATACATCA CCCAAGAGTCACACAAGCTGGATGTCCAAGCACGGCCACCTATCGCTGTCACAAATGCTGTCTCCTGGCGCAGCG AGGGGATACGCTACCGCAAAAACGAAGTCTTCCTCGACGTGGTCGAGTCTCTCAATCTTCTCGTTTCAGCAAATG GAAACGTCCTGCGCTCTGAGATTCTGGGCGCTGTCAAGATGAAGTGCTACCTGAGTGGTATGCCAGAGTTGCGAT TGGGCTTGAACGACAAAGCCATGTTCGAGACCACGGGTCGTGCTACACGAGGCAAGTCGGTCGAGATGGAGGACG TGAAGTTCCACCAGTGTGTCCGACTTTCGCGCTTCGAGAATGACCGCACAATCAGTTTCATCCCTCCGGACGGTG AATTCGAGCTCATGAGCTACCGACTGAACACACAAGTGAAGCCGTTGATCTGGGTGGAGTGCGTGGTTGAATCGC ACTCGGGATCCCGAATTGAATATATGCTCAAGGTAACATTCCCACCCAGTTTACCAAATATCAATCCCTAACCAG TATTTCACGACAGGCCAAAGCCCAATTCAAACGCCGCAGTACCGCCAACAACGTGGAGATTCTCGTCCCCGTCCC CGAAGACGCCGACTCCCCGCGCTTCCGCACAAATATCGGAACCGTGCACTACGCTCCCGAGAAGTCCGCCATCAT CTGGAAGATCAAGCAATTCGGCGGCGGCAAGGAATTCCTCATGCGCGCAGAGCTAGGTCTACCCTCTGTCAAGGG TGACGACGAGCGCGGCGGCGGTATGACCGGTGGGTTCGGAGGCAGCATGGGCGGAGCCGGCGGCGTAGGCAAGTC GAAACGTCCCATCAACGTCAAGTTCGAGATCCCCTATTTCACGACCAGCGGCATCCAAGTGCGATATCTGAAGAT CACCGAACCAAAGGTAAGTCTTTCCCATCAGTGGATTCTTATAATCTATCACTAACAATCAACTCCCACAGCTGC AATACCCCTCTCTCCCCTGGGTGCGATACATCACACAGTCGGGCGACATTGCCATGCGCATGCCAGAAATCCAAT GA |