Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g3488.t1
Gene name
Locationscaffold_05:802732..803476
Strand+
Gene length (bp)744
Transcript length (bp)558
Coding sequence length (bp)558
Protein length (aa) 186

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01127 Sdh_cyt Succinate dehydrogenase/Fumarate reductase transmembrane subunit 7.0E-25 60 180

GO

GO Term Description Terminal node
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors Yes
GO:0003674 molecular_function No
GO:0016491 oxidoreductase activity No
GO:0003824 catalytic activity No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 38 0.45

Transmembrane Domains

Domain # Start End Length
1 88 110 22
2 120 142 22
3 162 184 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g3488.t1
MFSQKLAQQSLRRLAVQQPLAMRSSMMGASPVAVALSKNIQTRQVTSNTQDPNEILVQQRLRRPVAPHLSIYRPQ
IGWIGSSLHRITGVALSGTLYLWATAYLASPALGWHIESASMVAAMGALPFAAKVALKTTLALPFTYHCMNGIRH
LMWDLGRGLTNPVIIKTGWTVIGLSVASAVGLALI*
Coding >Pro_DTO377G3_2|g3488.t1
ATGTTCTCCCAGAAGCTTGCCCAACAATCGCTGCGACGGCTTGCCGTCCAGCAACCGCTCGCTATGCGGTCGTCC
ATGATGGGCGCTTCGCCTGTGGCCGTTGCCCTCAGCAAGAACATTCAGACAAGACAAGTCACTTCAAACACCCAG
GACCCCAACGAGATCCTCGTCCAGCAGCGTCTTCGCCGTCCTGTTGCCCCTCATCTTAGCATCTACAGGCCCCAG
ATCGGCTGGATCGGTAGTTCCCTCCACCGTATCACTGGTGTGGCTCTCTCCGGCACCCTCTACCTTTGGGCTACT
GCCTACCTTGCCTCTCCCGCTCTCGGATGGCACATCGAGTCTGCCTCCATGGTCGCTGCCATGGGTGCCCTCCCT
TTCGCGGCCAAGGTCGCCCTGAAGACTACCCTGGCCCTTCCTTTCACCTACCACTGCATGAACGGTATCCGCCAC
TTGATGTGGGATCTCGGCCGTGGTCTCACTAACCCTGTTATCATCAAGACTGGCTGGACTGTGATTGGTCTCAGC
GTTGCCAGTGCTGTTGGTCTTGCTTTGATTTAA
Transcript >Pro_DTO377G3_2|g3488.t1
ATGTTCTCCCAGAAGCTTGCCCAACAATCGCTGCGACGGCTTGCCGTCCAGCAACCGCTCGCTATGCGGTCGTCC
ATGATGGGCGCTTCGCCTGTGGCCGTTGCCCTCAGCAAGAACATTCAGACAAGACAAGTCACTTCAAACACCCAG
GACCCCAACGAGATCCTCGTCCAGCAGCGTCTTCGCCGTCCTGTTGCCCCTCATCTTAGCATCTACAGGCCCCAG
ATCGGCTGGATCGGTAGTTCCCTCCACCGTATCACTGGTGTGGCTCTCTCCGGCACCCTCTACCTTTGGGCTACT
GCCTACCTTGCCTCTCCCGCTCTCGGATGGCACATCGAGTCTGCCTCCATGGTCGCTGCCATGGGTGCCCTCCCT
TTCGCGGCCAAGGTCGCCCTGAAGACTACCCTGGCCCTTCCTTTCACCTACCACTGCATGAACGGTATCCGCCAC
TTGATGTGGGATCTCGGCCGTGGTCTCACTAACCCTGTTATCATCAAGACTGGCTGGACTGTGATTGGTCTCAGC
GTTGCCAGTGCTGTTGGTCTTGCTTTGATTTAA
Gene >Pro_DTO377G3_2|g3488.t1
ATGTTCTCCCAGAAGCTTGCCCAACAATCGCTGCGACGGCGTATGTCTAGCCCAATTCCTACCTTGTCCGAATCT
GCGATCTAACTTATCCCGGACAGTTGCCGTCCAGCAACCGCTCGCTATGCGGTCGTCCATGATGGGCGCTTCGCC
TGTGGCCGTTGCCCTCAGCAAGAACATTCAGACAAGGTCAGTTATACAGCGCTTAAACGACAAGCTTTAATTGCT
TCGCTCGTCTTCGAATCAAGCACATGCCGAATGCCTACGTCATCCGCAATCTCCATAAGTCTATACTAACCAGGG
AATATGGTCTATAGACAAGTCACTTCAAACACCCAGGACCCCAACGAGATCCTCGTCCAGCAGCGTCTTCGCCGT
CCTGTTGCCCCTCATCTTAGCATCTACAGGCCCCAGATCGGCTGGATCGGTAGTTCCCTCCACCGTATCACTGGT
GTGGCTCTCTCCGGCACCCTCTACCTTTGGGCTACTGCCTACCTTGCCTCTCCCGCTCTCGGATGGCACATCGAG
TCTGCCTCCATGGTCGCTGCCATGGGTGCCCTCCCTTTCGCGGCCAAGGTCGCCCTGAAGACTACCCTGGCCCTT
CCTTTCACCTACCACTGCATGAACGGTATCCGCCACTTGATGTGGGATCTCGGCCGTGGTCTCACTAACCCTGTT
ATCATCAAGACTGGCTGGACTGTGATTGGTCTCAGCGTTGCCAGTGCTGTTGGTCTTGCTTTGATTTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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