© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3487.t1 |
| Gene name | |
| Location | scaffold_05:800424..801594 |
| Strand | - |
| Gene length (bp) | 1170 |
| Transcript length (bp) | 999 |
| Coding sequence length (bp) | 999 |
| Protein length (aa) | 333 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03060 | NMO | Nitronate monooxygenase | 1.5E-54 | 5 | 309 |
| PF00478 | IMPDH | IMP dehydrogenase / GMP reductase domain | 2.3E-12 | 4 | 213 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0018580 | nitronate monooxygenase activity | Yes |
| GO:0003824 | catalytic activity | Yes |
| GO:0016491 | oxidoreductase activity | No |
| GO:0016701 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen | No |
| GO:0016703 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) | No |
| GO:0004497 | monooxygenase activity | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 21 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 39.67 | 21.13 | 58.22 |
| 5d_25C | Five days - 25 degrees Celsius | 22.89 | 10.55 | 35.24 |
| 7d_25C | Seven days - 25 degrees Celsius | 22.87 | 10.07 | 35.67 |
| 10d_25C | Ten days - 25 degrees Celsius | 11.39 | 3.67 | 19.10 |
| 7d_15C | Seven days - 15 degrees Celsius | 35.05 | 16.74 | 53.36 |
| 7d_30C | Seven days - 30 degrees Celsius | 18.44 | 7.85 | 29.03 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.039566 | yes |
| 3d_25C | 7d_25C | 0.048448 | yes |
| 3d_25C | 7d_15C | 0.729536 | no |
| 3d_25C | 7d_30C | 0.006742 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.998471 | no |
| 5d_25C | 7d_15C | 0.152550 | no |
| 5d_25C | 7d_30C | 0.572611 | no |
| 5d_25C | 10d_25C | 0.031751 | yes |
| 7d_25C | 7d_15C | 0.157617 | no |
| 7d_25C | 7d_30C | 0.580044 | no |
| 7d_25C | 10d_25C | 0.033697 | yes |
| 7d_15C | 7d_30C | 0.029538 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.181081 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3487.t1 MPFNTALTRKLGIRVPVVQGGMQWVGYAELASAVSNAGGLGILTALTQPTPEDLRKEIRRCRTMTKYPFGVNLTL LPAIVPPDYSAYAQVIIDEGVKIVETAGNNPGPVITQLKKAGIIVLHKCTTIRHAKSAVKLGVDFLSIDGFECAG HVGEHDITNFILLSRARQELKIPFIASGGFADGQGLAAALALGAEGINMGTRFMSTVEAPIHQKVKEAIVAAQET DTALVLRRWKNTSRLFANKVAKDALKIEQESKTGEFSEVGPYVSGKRGRQVFINGDVDFGVWTAGQVIGLIHDIP TCEVLLTRIEKEAVEAMTRTRSLFIDAPSSKL* |
| Coding | >Pro_DTO377G3_2|g3487.t1 ATGCCTTTCAACACAGCCTTGACGCGAAAGCTCGGTATTCGAGTGCCCGTCGTGCAGGGTGGTATGCAATGGGTT GGATACGCTGAGCTGGCCTCGGCTGTTAGCAACGCTGGCGGACTTGGAATTCTCACAGCTCTCACCCAACCAACC CCCGAAGACCTCCGCAAAGAAATCCGCAGATGTCGCACCATGACCAAATACCCCTTCGGAGTGAATCTGACCCTC CTCCCCGCCATTGTTCCCCCCGATTACAGTGCCTACGCCCAAGTAATTATCGACGAAGGAGTCAAGATTGTCGAG ACTGCCGGTAACAACCCCGGCCCCGTCATCACCCAGCTGAAGAAGGCCGGCATCATCGTCCTACACAAGTGCACG ACCATCCGCCATGCCAAGTCCGCCGTCAAGCTCGGCGTGGACTTTCTTTCTATCGACGGCTTTGAGTGTGCCGGC CACGTCGGTGAGCACGACATCACCAATTTTATCCTTTTGAGCCGTGCGCGCCAGGAACTCAAGATTCCGTTCATC GCCTCTGGTGGATTCGCCGATGGCCAGGGTCTTGCTGCTGCCCTGGCGCTCGGCGCTGAGGGTATCAACATGGGT ACTCGCTTTATGAGCACTGTTGAAGCCCCAATCCACCAGAAGGTCAAGGAGGCTATCGTCGCGGCACAGGAGACT GATACTGCGCTTGTGCTGCGTCGGTGGAAGAATACCTCCCGCCTGTTCGCTAACAAGGTGGCTAAGGATGCATTG AAGATTGAGCAGGAGAGTAAGACTGGCGAGTTCAGCGAGGTTGGGCCCTATGTTAGTGGCAAGCGGGGTCGTCAA GTCTTCATTAACGGTGACGTTGATTTCGGCGTGTGGACTGCCGGTCAGGTTATTGGCTTGATTCACGACATCCCA ACTTGCGAGGTCCTGCTCACCCGGATCGAGAAGGAGGCCGTGGAGGCGATGACTCGGACCAGGTCTTTGTTTATC GATGCTCCCTCCAGCAAGCTTTGA |
| Transcript | >Pro_DTO377G3_2|g3487.t1 ATGCCTTTCAACACAGCCTTGACGCGAAAGCTCGGTATTCGAGTGCCCGTCGTGCAGGGTGGTATGCAATGGGTT GGATACGCTGAGCTGGCCTCGGCTGTTAGCAACGCTGGCGGACTTGGAATTCTCACAGCTCTCACCCAACCAACC CCCGAAGACCTCCGCAAAGAAATCCGCAGATGTCGCACCATGACCAAATACCCCTTCGGAGTGAATCTGACCCTC CTCCCCGCCATTGTTCCCCCCGATTACAGTGCCTACGCCCAAGTAATTATCGACGAAGGAGTCAAGATTGTCGAG ACTGCCGGTAACAACCCCGGCCCCGTCATCACCCAGCTGAAGAAGGCCGGCATCATCGTCCTACACAAGTGCACG ACCATCCGCCATGCCAAGTCCGCCGTCAAGCTCGGCGTGGACTTTCTTTCTATCGACGGCTTTGAGTGTGCCGGC CACGTCGGTGAGCACGACATCACCAATTTTATCCTTTTGAGCCGTGCGCGCCAGGAACTCAAGATTCCGTTCATC GCCTCTGGTGGATTCGCCGATGGCCAGGGTCTTGCTGCTGCCCTGGCGCTCGGCGCTGAGGGTATCAACATGGGT ACTCGCTTTATGAGCACTGTTGAAGCCCCAATCCACCAGAAGGTCAAGGAGGCTATCGTCGCGGCACAGGAGACT GATACTGCGCTTGTGCTGCGTCGGTGGAAGAATACCTCCCGCCTGTTCGCTAACAAGGTGGCTAAGGATGCATTG AAGATTGAGCAGGAGAGTAAGACTGGCGAGTTCAGCGAGGTTGGGCCCTATGTTAGTGGCAAGCGGGGTCGTCAA GTCTTCATTAACGGTGACGTTGATTTCGGCGTGTGGACTGCCGGTCAGGTTATTGGCTTGATTCACGACATCCCA ACTTGCGAGGTCCTGCTCACCCGGATCGAGAAGGAGGCCGTGGAGGCGATGACTCGGACCAGGTCTTTGTTTATC GATGCTCCCTCCAGCAAGCTTTGA |
| Gene | >Pro_DTO377G3_2|g3487.t1 ATGCCTTTCAACACAGCCTTGACGCGAAAGCTCGGTATTCGAGGTGCGCTATGAATTCATTATTCTGCAAATATC ACCAGCTGCTGATCACAGATATAGTGCCCGTCGTGCAGGGTGGTATGCAATGGGTTGGATACGCTGAGCTGGCCT CGGCTGTTAGCAACGCTGGCGGACTTGGAATTGTATGTTTACTCTTCAATGAAAGCCCTAATTTAATACAGTACT AACAATACAATCCAGCTCACAGCTCTCACCCAACCAACCCCCGAAGACCTCCGCAAAGAAATCCGCAGATGTCGC ACCATGACCAAATACCCCTTCGGAGTGAATCTGACCCTCCTCCCCGCCATTGTTCCCCCCGATTACAGTGCCTAC GCCCAAGTAATTATCGACGAAGGAGTCAAGATTGTCGAGACTGCCGGTAACAACCCCGGCCCCGTCATCACCCAG CTGAAGAAGGCCGGCATCATCGTCCTACACAAGTGCACGACCATCCGCCATGCCAAGTCCGCCGTCAAGCTCGGC GTGGACTTTCTTTCTATCGACGGCTTTGAGTGTGCCGGCCACGTCGGTGAGCACGACATCACCAATTTTATCCTT TTGAGCCGTGCGCGCCAGGAACTCAAGATTCCGTTCATCGCCTCTGGTGGATTCGCCGATGGCCAGGGTCTTGCT GCTGCCCTGGCGCTCGGCGCTGAGGGTATCAACATGGGTACTCGCTTTATGAGCACTGTTGAAGCCCCAATCCAC CAGAAGGTCAAGGAGGCTATCGTCGCGGCACAGGAGACTGATACTGCGCTTGTGCTGCGTCGGTGGAAGAATACC TCCCGCCTGTTCGCTAACAAGGTGGCTAAGGATGCATTGAAGATTGAGCAGGAGAGTAAGACTGGCGAGTTCAGC GAGGTTGGGCCCTATGTTAGTGGCAAGCGGGGTCGTCAAGTCTTCATTAACGGTGACGTTGATTTCGGCGTAAGT TAATTGCAAAATTATGTTTCATGTGCATTCGCTGACTCTTTCGTTATACAGGTGTGGACTGCCGGTCAGGTTATT GGCTTGATTCACGACATCCCAACTTGCGAGGTCCTGCTCACCCGGATCGAGAAGGAGGCCGTGGAGGCGATGACT CGGACCAGGTCTTTGTTTATCGATGCTCCCTCCAGCAAGCTTTGA |