© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3464.t1 |
| Gene name | |
| Location | scaffold_05:750889..753055 |
| Strand | - |
| Gene length (bp) | 2166 |
| Transcript length (bp) | 2052 |
| Coding sequence length (bp) | 2052 |
| Protein length (aa) | 684 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01179 | Cu_amine_oxid | Copper amine oxidase, enzyme domain | 1.8E-157 | 238 | 651 |
| PF02728 | Cu_amine_oxidN3 | Copper amine oxidase, N3 domain | 8.3E-23 | 111 | 212 |
| PF02727 | Cu_amine_oxidN2 | Copper amine oxidase, N2 domain | 3.6E-14 | 21 | 104 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0048038 | quinone binding | Yes |
| GO:0008131 | primary amine oxidase activity | Yes |
| GO:0009308 | amine metabolic process | Yes |
| GO:0005507 | copper ion binding | Yes |
| GO:0046914 | transition metal ion binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0046872 | metal ion binding | No |
| GO:0043167 | ion binding | No |
| GO:0008150 | biological_process | No |
| GO:0016641 | oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0005488 | binding | No |
| GO:0003674 | molecular_function | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:0016638 | oxidoreductase activity, acting on the CH-NH2 group of donors | No |
| GO:0043169 | cation binding | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 16 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 18.11 | 9.81 | 26.42 |
| 5d_25C | Five days - 25 degrees Celsius | 10.34 | 4.89 | 15.79 |
| 7d_25C | Seven days - 25 degrees Celsius | 8.91 | 3.98 | 13.84 |
| 10d_25C | Ten days - 25 degrees Celsius | 3.96 | 1.30 | 6.62 |
| 7d_15C | Seven days - 15 degrees Celsius | 10.21 | 4.77 | 15.65 |
| 7d_30C | Seven days - 30 degrees Celsius | 6.59 | 2.73 | 10.45 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.030434 | yes |
| 3d_25C | 7d_25C | 0.011688 | yes |
| 3d_25C | 7d_15C | 0.033253 | yes |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.699124 | no |
| 5d_25C | 7d_15C | 0.978969 | no |
| 5d_25C | 7d_30C | 0.144366 | no |
| 5d_25C | 10d_25C | 0.002297 | yes |
| 7d_25C | 7d_15C | 0.740880 | no |
| 7d_25C | 7d_30C | 0.397338 | no |
| 7d_25C | 10d_25C | 0.011993 | yes |
| 7d_15C | 7d_30C | 0.171662 | no |
| 7d_15C | 10d_25C | 0.002761 | yes |
| 7d_30C | 10d_25C | 0.154330 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3464.t1 MVLDRLHQLTHQVSATAPPPHPLDPLSTVEIDAAVNIVRKEHGSLNFNAVTLYEPRKAQMMAWVADPENAPRPSR AADIVAIAPGGKIYDGVVDLDQKKIIKWQHTPNVQPLITMEDLQEVEHVVRKDAKVIEQCGIIGIPKEDMHKVYC DPWTIGYDERFGTGVRLQQALMYYRPHPDDSQYTYPLDFCPIFNAETKQIIHIDVPSVRRPLSKAPPNNYHPASI EKEGGYRTDLKPIHITQPEGVSFEVKGRIIEWQNWNIHVGFNYREGIVLNNITFNDKGNVRPVFWRLSMAEMVVP YGNPEHPHQRKHAFDLGEYGGGYMTNSLTLGCDCKGAIHYMDAAFVNRAGASTIIKNAICIHEEDAGILFKHTDF RDESMVVTRGRKLIISQIFTAANYEYCVYWIFHQDGTIQLEIKLTGILNTYAMNPGEDTKGWGTEVYPGVNAHNH QHLFCLRVDPNIDGPNNTVFQVDAVQGPGEVGSAENKYGNAFYAKKTKFSTPIEAMSDYNGSTSRSWDMANTNKL NPYSKKPVSYKLVSRDVPPLLPKAGSLVWKRAGFARHAVHVTKYDDDQVHPAGRHVPQTSGEPSEGLPAWIEAAG PSCSIDNTDVVLWHTFGLTHFPAPEDYPIMPAEPMTLLLRPRHFFDRNPVLDVPPSFARTPTQVAANASTCACKK NDGSSVLV* |
| Coding | >Pro_DTO377G3_2|g3464.t1 ATGGTTCTCGACCGACTACACCAATTGACTCACCAGGTCAGCGCTACTGCACCGCCACCTCATCCACTTGATCCT CTGTCTACGGTGGAAATTGATGCGGCTGTCAACATTGTCCGCAAAGAACATGGCTCGCTCAACTTCAATGCGGTC ACACTATACGAGCCCCGCAAGGCCCAGATGATGGCCTGGGTGGCTGATCCAGAAAATGCGCCTCGTCCTAGCCGA GCCGCTGATATTGTTGCCATTGCGCCTGGTGGTAAGATCTACGATGGTGTGGTTGACCTGGACCAGAAGAAGATC ATCAAGTGGCAGCACACACCGAATGTTCAGCCTCTGATCACTATGGAGGATTTGCAGGAGGTTGAGCATGTTGTA CGCAAGGATGCTAAGGTCATCGAGCAATGTGGTATCATTGGAATTCCCAAGGAGGATATGCATAAAGTATACTGT GACCCATGGACAATTGGATATGATGAGCGCTTTGGAACTGGTGTCCGTCTTCAGCAAGCCCTGATGTACTATCGC CCTCACCCAGACGACTCCCAATATACCTATCCCTTGGACTTCTGTCCCATCTTCAACGCCGAGACCAAGCAGATC ATCCACATTGATGTGCCGTCTGTGCGAAGACCGCTCAGCAAGGCGCCTCCAAACAACTACCACCCGGCCTCGATC GAAAAAGAAGGAGGATACCGAACCGATCTTAAGCCAATTCACATCACCCAGCCAGAGGGTGTGTCTTTCGAGGTC AAAGGACGCATAATCGAATGGCAGAACTGGAATATCCACGTCGGCTTCAACTACCGGGAAGGAATTGTCCTGAAC AACATCACATTCAACGACAAGGGCAATGTGCGGCCTGTATTCTGGCGTCTTTCAATGGCCGAGATGGTCGTGCCA TACGGCAACCCGGAGCATCCCCACCAACGCAAGCATGCATTTGACCTGGGCGAGTACGGCGGTGGATACATGACA AACAGCCTGACATTGGGATGCGACTGCAAGGGCGCAATCCACTACATGGACGCAGCATTCGTCAACCGGGCGGGC GCTAGCACAATCATCAAGAACGCCATCTGCATCCACGAAGAAGATGCCGGCATCCTATTCAAGCACACCGATTTC CGCGACGAGTCGATGGTCGTAACCCGCGGCCGCAAGCTCATCATCTCGCAGATCTTTACCGCAGCAAATTACGAG TACTGCGTGTACTGGATCTTCCACCAGGACGGCACAATCCAGCTCGAGATCAAGCTGACCGGCATCCTCAACACT TACGCCATGAACCCAGGCGAGGATACCAAGGGCTGGGGAACCGAGGTGTACCCCGGCGTCAACGCCCATAACCAC CAGCACCTGTTCTGTCTCCGTGTAGACCCGAACATCGACGGGCCGAACAATACCGTCTTCCAGGTAGACGCAGTC CAAGGACCCGGTGAAGTCGGCAGTGCCGAGAACAAGTACGGCAACGCCTTCTACGCCAAAAAGACAAAGTTCTCC ACACCCATCGAGGCTATGTCCGACTATAACGGGTCTACCAGCCGTTCTTGGGACATGGCCAATACCAACAAGCTC AACCCATACAGCAAGAAGCCCGTCAGCTACAAGCTAGTCAGCCGCGATGTTCCTCCCCTTCTCCCCAAGGCCGGC AGCCTGGTCTGGAAGCGAGCAGGCTTCGCACGCCATGCTGTCCATGTCACCAAATATGACGACGACCAAGTCCAC CCAGCTGGCCGCCACGTCCCCCAGACCTCCGGTGAGCCTTCGGAGGGTCTGCCGGCGTGGATCGAAGCTGCTGGC CCCAGCTGCTCTATTGATAACACCGACGTCGTGCTCTGGCATACTTTCGGTCTGACGCACTTCCCTGCGCCGGAG GACTACCCGATTATGCCTGCAGAGCCGATGACACTTCTGCTGCGCCCGCGTCACTTCTTTGACCGCAATCCTGTT CTCGATGTGCCTCCTAGCTTTGCGCGCACACCCACGCAGGTGGCTGCTAATGCGAGCACATGTGCCTGCAAGAAG AATGATGGCTCCAGTGTTTTGGTTTGA |
| Transcript | >Pro_DTO377G3_2|g3464.t1 ATGGTTCTCGACCGACTACACCAATTGACTCACCAGGTCAGCGCTACTGCACCGCCACCTCATCCACTTGATCCT CTGTCTACGGTGGAAATTGATGCGGCTGTCAACATTGTCCGCAAAGAACATGGCTCGCTCAACTTCAATGCGGTC ACACTATACGAGCCCCGCAAGGCCCAGATGATGGCCTGGGTGGCTGATCCAGAAAATGCGCCTCGTCCTAGCCGA GCCGCTGATATTGTTGCCATTGCGCCTGGTGGTAAGATCTACGATGGTGTGGTTGACCTGGACCAGAAGAAGATC ATCAAGTGGCAGCACACACCGAATGTTCAGCCTCTGATCACTATGGAGGATTTGCAGGAGGTTGAGCATGTTGTA CGCAAGGATGCTAAGGTCATCGAGCAATGTGGTATCATTGGAATTCCCAAGGAGGATATGCATAAAGTATACTGT GACCCATGGACAATTGGATATGATGAGCGCTTTGGAACTGGTGTCCGTCTTCAGCAAGCCCTGATGTACTATCGC CCTCACCCAGACGACTCCCAATATACCTATCCCTTGGACTTCTGTCCCATCTTCAACGCCGAGACCAAGCAGATC ATCCACATTGATGTGCCGTCTGTGCGAAGACCGCTCAGCAAGGCGCCTCCAAACAACTACCACCCGGCCTCGATC GAAAAAGAAGGAGGATACCGAACCGATCTTAAGCCAATTCACATCACCCAGCCAGAGGGTGTGTCTTTCGAGGTC AAAGGACGCATAATCGAATGGCAGAACTGGAATATCCACGTCGGCTTCAACTACCGGGAAGGAATTGTCCTGAAC AACATCACATTCAACGACAAGGGCAATGTGCGGCCTGTATTCTGGCGTCTTTCAATGGCCGAGATGGTCGTGCCA TACGGCAACCCGGAGCATCCCCACCAACGCAAGCATGCATTTGACCTGGGCGAGTACGGCGGTGGATACATGACA AACAGCCTGACATTGGGATGCGACTGCAAGGGCGCAATCCACTACATGGACGCAGCATTCGTCAACCGGGCGGGC GCTAGCACAATCATCAAGAACGCCATCTGCATCCACGAAGAAGATGCCGGCATCCTATTCAAGCACACCGATTTC CGCGACGAGTCGATGGTCGTAACCCGCGGCCGCAAGCTCATCATCTCGCAGATCTTTACCGCAGCAAATTACGAG TACTGCGTGTACTGGATCTTCCACCAGGACGGCACAATCCAGCTCGAGATCAAGCTGACCGGCATCCTCAACACT TACGCCATGAACCCAGGCGAGGATACCAAGGGCTGGGGAACCGAGGTGTACCCCGGCGTCAACGCCCATAACCAC CAGCACCTGTTCTGTCTCCGTGTAGACCCGAACATCGACGGGCCGAACAATACCGTCTTCCAGGTAGACGCAGTC CAAGGACCCGGTGAAGTCGGCAGTGCCGAGAACAAGTACGGCAACGCCTTCTACGCCAAAAAGACAAAGTTCTCC ACACCCATCGAGGCTATGTCCGACTATAACGGGTCTACCAGCCGTTCTTGGGACATGGCCAATACCAACAAGCTC AACCCATACAGCAAGAAGCCCGTCAGCTACAAGCTAGTCAGCCGCGATGTTCCTCCCCTTCTCCCCAAGGCCGGC AGCCTGGTCTGGAAGCGAGCAGGCTTCGCACGCCATGCTGTCCATGTCACCAAATATGACGACGACCAAGTCCAC CCAGCTGGCCGCCACGTCCCCCAGACCTCCGGTGAGCCTTCGGAGGGTCTGCCGGCGTGGATCGAAGCTGCTGGC CCCAGCTGCTCTATTGATAACACCGACGTCGTGCTCTGGCATACTTTCGGTCTGACGCACTTCCCTGCGCCGGAG GACTACCCGATTATGCCTGCAGAGCCGATGACACTTCTGCTGCGCCCGCGTCACTTCTTTGACCGCAATCCTGTT CTCGATGTGCCTCCTAGCTTTGCGCGCACACCCACGCAGGTGGCTGCTAATGCGAGCACATGTGCCTGCAAGAAG AATGATGGCTCCAGTGTTTTGGTTTGA |
| Gene | >Pro_DTO377G3_2|g3464.t1 ATGGTTCTCGACCGACTACACCAATTGACTCACCAGGTCAGCGCTACTGCACCGCCACCTCATCCACTTGATCCT CTGTCTACGGTGGAAATTGATGCGGCTGTCAACATTGTCCGCAAAGAACATGGCTCGCTCAACTTCAATGCGGTC ACACTATACGAGCCCCGCAAGGCCCAGATGATGGCCTGGGTGGCTGATCCAGAAAATGCGCCTCGTCCTAGCCGA GCCGCTGATATTGTTGCCATTGCGCCTGGTGGTAAGATCTACGATGGTGTGGTTGACCTGGACCAGAAGAAGATC ATCAAGTGGCAGCACACACCGAATGTTCAGCCTCTGATCACTATGGAGGATTTGCAGGAGGTTGAGCATGTTGTA CGCAAGGATGCTAAGGTCATCGAGCAATGTGGTATCATTGGAATTCCCAAGGAGGATATGCATAAAGTATACTGT GACCGTAAGTGGACTTCCCTCGTTTGTCAAAGATTGATATTGACCAAATGGTATTATAGCATGGACAATTGGATA TGATGAGCGCTTTGGAACTGGTGTCCGTCTTCAGCAAGCCCTGATGTACTATCGCCCTCACCCAGACGACTCCCA ATATACCTATCCCTTGGACTTCTGTCCCATCTTCAACGCCGAGACCAAGCAGATCATCCACATTGATGTGCCGTC TGTGCGAAGACCGCTCAGCAAGGCGCCTCCAAACAACTACCACCCGGCCTCGATCGAAAAAGAAGGAGGATACCG AACCGATCTTAAGCCAATTCACATCACCCAGCCAGAGGGTGTGTCTTTCGAGGTCAAAGGACGCATAATCGAATG GCAGAACTGGAATATCCACGTCGGCTTCAACTACCGGGAAGGAATTGTCCTGAACAACATCACATTCAACGACAA GGGCAATGTGCGGCCTGTATTCTGGCGTCTTTCAATGGCCGAGATGGTCGTGCCATACGGCAACCCGGAGCATCC CCACCAACGCAAGCATGCATTTGACCTGGGCGAGTACGGCGGTGGATACATGACAAACAGCCTGACATTGGGATG CGACTGCAAGGGCGCAATCCACTACATGGACGCAGCATTCGTCAACCGGGCGGGCGCTAGCACAATCATCAAGAA CGCCATCTGCATCCACGAAGAAGATGCCGGCATCCTATTCAAGCACACCGATTTCCGCGACGAGTCGATGGTCGT AACCCGCGGCCGCAAGCTCATCATCTCGCAGATCTTTACCGCAGCAAATTACGAGTACTGCGTGTACTGGATCTT CCACCAGGACGGCACAATCCAGCTCGAGATCAAGCTGACCGGCATCCTCAACACTTACGCCATGAACCCAGGCGA GGATACCAAGGGCTGGGGAACCGAGGTGTACCCCGGCGTCAACGCCCATAACCACCAGCACCTGTTCTGTCTCCG TGTAGACCCGAACATCGACGGGCCGAACAATACCGTCTTCCAGGTAGACGCAGTCCAAGGACCCGGTGAAGTCGG CAGTGCCGAGAACAAGTACGGCAACGCCTTCTACGCCAAAAAGACAAAGTTCTCCACACCCATCGAGGCTATGTC CGACTATAACGGGTCTACCAGCCGTTCTTGGGACATGGCCAATACCAACAAGCTCAACCCATACAGCAAGAAGCC CGTCAGCTACAAGCTAGTCAGCCGCGATGTTCCTCCCCTTCTCCCCAAGGCCGGCAGCCTGGTCTGGAAGCGAGC AGGCTTCGCACGCCATGCTGTCCATGTCACCAAATGTGAGTTTTGCAATTTCCCCCTTCTGATATCGTGTTCCTT TTCTGACTTCATTCTCTAGATGACGACGACCAAGTCCACCCAGCTGGCCGCCACGTCCCCCAGACCTCCGGTGAG CCTTCGGAGGGTCTGCCGGCGTGGATCGAAGCTGCTGGCCCCAGCTGCTCTATTGATAACACCGACGTCGTGCTC TGGCATACTTTCGGTCTGACGCACTTCCCTGCGCCGGAGGACTACCCGATTATGCCTGCAGAGCCGATGACACTT CTGCTGCGCCCGCGTCACTTCTTTGACCGCAATCCTGTTCTCGATGTGCCTCCTAGCTTTGCGCGCACACCCACG CAGGTGGCTGCTAATGCGAGCACATGTGCCTGCAAGAAGAATGATGGCTCCAGTGTTTTGGTTTGA |