© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3454.t1 |
| Gene name | |
| Location | scaffold_05:734640..735979 |
| Strand | + |
| Gene length (bp) | 1339 |
| Transcript length (bp) | 1272 |
| Coding sequence length (bp) | 1272 |
| Protein length (aa) | 424 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF16899 | Cyclin_C_2 | Cyclin C-terminal domain | 4.1E-31 | 185 | 331 |
| PF00134 | Cyclin_N | Cyclin, N-terminal domain | 4.9E-05 | 108 | 180 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 41 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 34.73 | 19.10 | 50.36 |
| 5d_25C | Five days - 25 degrees Celsius | 32.67 | 17.70 | 47.64 |
| 7d_25C | Seven days - 25 degrees Celsius | 33.74 | 18.39 | 49.09 |
| 10d_25C | Ten days - 25 degrees Celsius | 32.08 | 17.24 | 46.92 |
| 7d_15C | Seven days - 15 degrees Celsius | 26.21 | 13.50 | 38.91 |
| 7d_30C | Seven days - 30 degrees Celsius | 26.02 | 13.36 | 38.67 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.868830 | no |
| 3d_25C | 7d_25C | 0.942098 | no |
| 3d_25C | 7d_15C | 0.327538 | no |
| 3d_25C | 7d_30C | 0.308820 | no |
| 3d_25C | 10d_25C | 0.824242 | no |
| 5d_25C | 7d_25C | 0.936850 | no |
| 5d_25C | 7d_15C | 0.478789 | no |
| 5d_25C | 7d_30C | 0.455884 | no |
| 5d_25C | 10d_25C | 0.964416 | no |
| 7d_25C | 7d_15C | 0.392652 | no |
| 7d_25C | 7d_30C | 0.369523 | no |
| 7d_25C | 10d_25C | 0.894004 | no |
| 7d_15C | 7d_30C | 0.986790 | no |
| 7d_15C | 10d_25C | 0.513360 | no |
| 7d_30C | 10d_25C | 0.496596 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3454.t1 MIEDDIYRASSQYRLWSYTEPSLQSLRATTNAVASERVRAALHRSRETHQSTASSAAGTPLPESNTDTKNKDVEC LTPEEELVLVRYYCEKTLELGETYKPPIPTMVRATAIQYLRRFYLTNSPMTYHPKSIMACALFVATKTDNYYISL RQFADGIPGDTKTEDVIAPEFLLMQGLRFTFDVRHPFRGLEGGVMELQAIAEGQGQPAPHLPYETAEDLQQGLLS IAPPPVPSSSMSDRIARAHGTTRELLKSAAQMTDAYFLYTPSQIWFSAFLLADRPLAEFLLDVKLGGPVTATIPA PETDENGLVNPLYEIRFKLHHVLTECSALLQSYTPLSSDPAQMKSLKRIAKKVYHCQNPEKVNLAATKRESTQPS SAVQSDTGIVNSESETERLAKKRKLEQGQAVRQDDDVFGPELVTQRTK* |
| Coding | >Pro_DTO377G3_2|g3454.t1 ATGATTGAAGATGACATCTACCGCGCCTCGTCCCAGTACCGTCTGTGGTCATACACCGAGCCATCTCTGCAATCT CTCAGAGCTACGACAAATGCCGTTGCTAGCGAGCGCGTGCGCGCCGCTTTGCACAGATCGCGCGAGACTCATCAG TCGACCGCATCCTCCGCGGCGGGAACACCACTACCGGAAAGCAACACGGACACGAAGAATAAAGATGTAGAATGT TTGACACCGGAGGAGGAGCTCGTTCTCGTGCGGTATTACTGCGAGAAGACGCTAGAGCTGGGAGAGACATATAAG CCACCAATCCCAACAATGGTCCGGGCCACCGCGATCCAATACCTCCGCCGCTTCTACCTAACCAATTCACCCATG ACATACCATCCGAAGTCGATCATGGCGTGTGCGCTCTTCGTCGCGACGAAAACCGATAATTACTATATATCTCTT CGACAATTTGCAGATGGAATTCCTGGTGACACAAAGACAGAGGACGTCATCGCACCGGAATTCTTGCTTATGCAG GGACTGCGTTTCACCTTTGATGTACGGCATCCGTTTCGAGGACTGGAAGGCGGCGTCATGGAACTACAAGCCATC GCGGAAGGCCAAGGACAACCGGCCCCCCATCTACCATATGAGACCGCAGAAGACCTCCAGCAAGGATTGCTGTCC ATCGCACCTCCTCCCGTCCCATCATCTTCAATGTCAGATCGAATCGCTCGAGCCCACGGCACAACTCGTGAGCTG CTGAAATCCGCTGCGCAGATGACGGACGCCTACTTCTTGTACACACCATCCCAGATATGGTTCTCTGCCTTTTTA CTGGCAGATCGTCCCCTAGCAGAGTTTTTGCTGGATGTCAAACTCGGTGGTCCAGTTACAGCCACAATCCCTGCC CCCGAAACAGACGAAAATGGCCTGGTGAACCCTCTATACGAAATCCGCTTCAAGCTGCATCACGTCTTGACTGAG TGCTCTGCTCTACTCCAATCCTACACGCCTCTCTCCTCCGACCCCGCGCAAATGAAGAGCCTCAAGCGCATCGCA AAGAAAGTATATCATTGCCAGAACCCCGAGAAAGTGAACCTGGCTGCAACTAAACGGGAATCAACCCAGCCATCT TCCGCTGTTCAAAGTGACACTGGAATAGTCAACTCCGAGAGCGAAACAGAACGCCTAGCGAAAAAGCGGAAATTA GAACAAGGGCAGGCTGTCCGTCAGGATGATGATGTTTTTGGTCCGGAGTTGGTCACTCAGCGAACCAAGTAG |
| Transcript | >Pro_DTO377G3_2|g3454.t1 ATGATTGAAGATGACATCTACCGCGCCTCGTCCCAGTACCGTCTGTGGTCATACACCGAGCCATCTCTGCAATCT CTCAGAGCTACGACAAATGCCGTTGCTAGCGAGCGCGTGCGCGCCGCTTTGCACAGATCGCGCGAGACTCATCAG TCGACCGCATCCTCCGCGGCGGGAACACCACTACCGGAAAGCAACACGGACACGAAGAATAAAGATGTAGAATGT TTGACACCGGAGGAGGAGCTCGTTCTCGTGCGGTATTACTGCGAGAAGACGCTAGAGCTGGGAGAGACATATAAG CCACCAATCCCAACAATGGTCCGGGCCACCGCGATCCAATACCTCCGCCGCTTCTACCTAACCAATTCACCCATG ACATACCATCCGAAGTCGATCATGGCGTGTGCGCTCTTCGTCGCGACGAAAACCGATAATTACTATATATCTCTT CGACAATTTGCAGATGGAATTCCTGGTGACACAAAGACAGAGGACGTCATCGCACCGGAATTCTTGCTTATGCAG GGACTGCGTTTCACCTTTGATGTACGGCATCCGTTTCGAGGACTGGAAGGCGGCGTCATGGAACTACAAGCCATC GCGGAAGGCCAAGGACAACCGGCCCCCCATCTACCATATGAGACCGCAGAAGACCTCCAGCAAGGATTGCTGTCC ATCGCACCTCCTCCCGTCCCATCATCTTCAATGTCAGATCGAATCGCTCGAGCCCACGGCACAACTCGTGAGCTG CTGAAATCCGCTGCGCAGATGACGGACGCCTACTTCTTGTACACACCATCCCAGATATGGTTCTCTGCCTTTTTA CTGGCAGATCGTCCCCTAGCAGAGTTTTTGCTGGATGTCAAACTCGGTGGTCCAGTTACAGCCACAATCCCTGCC CCCGAAACAGACGAAAATGGCCTGGTGAACCCTCTATACGAAATCCGCTTCAAGCTGCATCACGTCTTGACTGAG TGCTCTGCTCTACTCCAATCCTACACGCCTCTCTCCTCCGACCCCGCGCAAATGAAGAGCCTCAAGCGCATCGCA AAGAAAGTATATCATTGCCAGAACCCCGAGAAAGTGAACCTGGCTGCAACTAAACGGGAATCAACCCAGCCATCT TCCGCTGTTCAAAGTGACACTGGAATAGTCAACTCCGAGAGCGAAACAGAACGCCTAGCGAAAAAGCGGAAATTA GAACAAGGGCAGGCTGTCCGTCAGGATGATGATGTTTTTGGTCCGGAGTTGGTCACTCAGCGAACCAAGTAG |
| Gene | >Pro_DTO377G3_2|g3454.t1 ATGATTGAAGATGACATCTACCGCGCCTCGTCCCAGTACCGTCTGTGGTCATACACCGAGCCATCTCTGCAATCT CTCAGAGCTACGACAAATGCCGTTGCTAGCGAGCGCGTGCGCGCCGCTTTGCACAGATCGCGCGAGACTCATCAG TCGACCGCATCCTCCGCGGCGGGAACACCACTACCGGAAAGCAACACGGACACGAAGAATAAAGATGTAGAATGT TTGACACCGGAGGAGGAGCTCGTTCTCGTGCGGTATTACTGCGAGAAGACGCTAGAGCTGGGAGAGACATATAAG CCACCAATCCCAACAATGGTCCGGGTACGTTACGCTCTTCATAAGTACAAATAAGCTTGGGAAGCTGACATTTTT CATTCTACGCATACAGGCCACCGCGATCCAATACCTCCGCCGCTTCTACCTAACCAATTCACCCATGACATACCA TCCGAAGTCGATCATGGCGTGTGCGCTCTTCGTCGCGACGAAAACCGATAATTACTATATATCTCTTCGACAATT TGCAGATGGAATTCCTGGTGACACAAAGACAGAGGACGTCATCGCACCGGAATTCTTGCTTATGCAGGGACTGCG TTTCACCTTTGATGTACGGCATCCGTTTCGAGGACTGGAAGGCGGCGTCATGGAACTACAAGCCATCGCGGAAGG CCAAGGACAACCGGCCCCCCATCTACCATATGAGACCGCAGAAGACCTCCAGCAAGGATTGCTGTCCATCGCACC TCCTCCCGTCCCATCATCTTCAATGTCAGATCGAATCGCTCGAGCCCACGGCACAACTCGTGAGCTGCTGAAATC CGCTGCGCAGATGACGGACGCCTACTTCTTGTACACACCATCCCAGATATGGTTCTCTGCCTTTTTACTGGCAGA TCGTCCCCTAGCAGAGTTTTTGCTGGATGTCAAACTCGGTGGTCCAGTTACAGCCACAATCCCTGCCCCCGAAAC AGACGAAAATGGCCTGGTGAACCCTCTATACGAAATCCGCTTCAAGCTGCATCACGTCTTGACTGAGTGCTCTGC TCTACTCCAATCCTACACGCCTCTCTCCTCCGACCCCGCGCAAATGAAGAGCCTCAAGCGCATCGCAAAGAAAGT ATATCATTGCCAGAACCCCGAGAAAGTGAACCTGGCTGCAACTAAACGGGAATCAACCCAGCCATCTTCCGCTGT TCAAAGTGACACTGGAATAGTCAACTCCGAGAGCGAAACAGAACGCCTAGCGAAAAAGCGGAAATTAGAACAAGG GCAGGCTGTCCGTCAGGATGATGATGTTTTTGGTCCGGAGTTGGTCACTCAGCGAACCAAGTAG |