© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3441.t1 |
| Gene name | |
| Location | scaffold_05:698071..699694 |
| Strand | - |
| Gene length (bp) | 1623 |
| Transcript length (bp) | 1623 |
| Coding sequence length (bp) | 1623 |
| Protein length (aa) | 541 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00083 | Sugar_tr | Sugar (and other) transporter | 5.9E-65 | 46 | 508 |
| PF07690 | MFS_1 | Major Facilitator Superfamily | 1.1E-12 | 48 | 449 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 62 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 100 | 119 | 19 |
| 2 | 129 | 151 | 22 |
| 3 | 306 | 328 | 22 |
| 4 | 343 | 365 | 22 |
| 5 | 372 | 394 | 22 |
| 6 | 404 | 426 | 22 |
| 7 | 446 | 465 | 19 |
| 8 | 475 | 494 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 46.50 | 26.39 | 66.62 |
| 5d_25C | Five days - 25 degrees Celsius | 37.08 | 21.29 | 52.88 |
| 7d_25C | Seven days - 25 degrees Celsius | 32.86 | 17.80 | 47.93 |
| 10d_25C | Ten days - 25 degrees Celsius | 10.02 | 4.29 | 15.76 |
| 7d_15C | Seven days - 15 degrees Celsius | 28.06 | 13.26 | 42.86 |
| 7d_30C | Seven days - 30 degrees Celsius | 15.35 | 7.20 | 23.50 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.413424 | no |
| 3d_25C | 7d_25C | 0.179558 | no |
| 3d_25C | 7d_15C | 0.057587 | no |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.714371 | no |
| 5d_25C | 7d_15C | 0.347983 | no |
| 5d_25C | 7d_30C | 0.000700 | yes |
| 5d_25C | 10d_25C | 0.000700 | yes |
| 7d_25C | 7d_15C | 0.653765 | no |
| 7d_25C | 7d_30C | 0.002761 | yes |
| 7d_25C | 10d_25C | 0.000700 | yes |
| 7d_15C | 7d_30C | 0.030863 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.177767 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3441.t1 MDLRHEIPKIEPGLSSNDTLTDSITRNITTKNAPSTTGSMLRLSLWVSFAAWISNFDNGYAGTVLIMPSYKHAFG SCVQVIDPNTYAEIRHCSLTPLQQSLISLNFLFVAIGGAIAGMTGRYFGRRGSIQAGCTLAIIGAAGMLGTSGSF LRYMVCRSISAVGVGQLIVSSVTYGSECIVANKRGLSLGLYNVGLAGGNLAASAVCAGSARLEATNDWQWKTPIL CQIPLGVILGAGILMLPESPRWLMIHGREEEARSSFGVLYCQSPYSPEITMQIDDIRTNLAIERASLKSVSCFDI YRRKHISRTLISAMIMIGIAITGIQFVQPYAALFLKGVGISDPYLINVIIGLCILGGSFFGPFIVEYGGRRIAML SGYIVMAVCMLTLSSVSTALGMDTSAEIVIVVLLCLWAFVFGGTIAASANLSSVEMHSVSLRTYGQANTTVFYGI FAFGATFWTPYMLGAGYGDMGPNVGYFYAGVTVVIAILTFLLVPETAGITLEQIDEGFDSGIKAWKTSLPKNRAI ASSQKRSMAGGHVGA* |
| Coding | >Pro_DTO377G3_2|g3441.t1 ATGGATTTGCGACACGAAATTCCGAAAATAGAGCCTGGGTTGAGCTCTAATGACACACTCACCGATTCCATTACC CGAAACATTACCACAAAAAATGCTCCAAGCACGACCGGATCGATGCTGCGTCTTTCATTATGGGTCTCGTTTGCC GCATGGATCTCGAACTTCGACAACGGCTACGCCGGTACGGTGCTGATCATGCCGTCCTACAAACACGCCTTTGGA AGCTGCGTGCAAGTTATAGACCCGAATACGTATGCCGAAATTCGACATTGCTCATTGACGCCACTACAACAATCT CTTATCAGCCTCAACTTCTTGTTCGTTGCCATTGGAGGTGCGATTGCGGGCATGACCGGCCGATACTTCGGGCGC AGGGGGTCAATCCAAGCTGGATGTACATTGGCTATTATCGGTGCTGCTGGAATGCTTGGCACCAGCGGTAGCTTC TTGCGCTACATGGTGTGCAGATCGATCAGTGCTGTGGGAGTTGGACAGTTGATTGTATCCAGCGTCACTTATGGT TCTGAGTGCATTGTCGCCAACAAGCGCGGCCTGTCCTTAGGGTTGTATAATGTTGGACTTGCCGGAGGAAATCTT GCTGCTTCCGCGGTGTGTGCAGGTTCTGCTCGTCTAGAGGCAACCAATGACTGGCAGTGGAAGACACCCATTTTA TGCCAAATACCCTTGGGGGTTATTCTCGGTGCTGGGATTTTGATGCTTCCCGAGTCGCCGCGCTGGCTTATGATA CACGGTCGAGAGGAGGAGGCACGCAGCTCATTCGGCGTGCTATACTGCCAAAGTCCATATTCGCCGGAAATCACC ATGCAGATTGATGATATAAGAACCAACCTTGCAATCGAGCGTGCAAGCCTCAAATCTGTCTCATGCTTTGATATC TATCGCAGGAAGCATATCAGCCGTACCTTGATATCTGCTATGATCATGATTGGAATCGCCATTACTGGTATCCAA TTTGTACAACCATACGCTGCACTGTTCCTCAAAGGAGTTGGCATCAGTGACCCATATTTGATCAATGTTATCATC GGCTTGTGCATCCTAGGAGGATCATTTTTTGGTCCGTTCATTGTGGAATATGGCGGAAGAAGAATTGCCATGCTT TCCGGCTATATTGTCATGGCTGTCTGCATGCTCACTCTTTCCTCTGTGAGCACCGCTCTTGGAATGGATACAAGT GCAGAGATAGTTATCGTCGTTCTTCTGTGTTTGTGGGCTTTTGTCTTTGGTGGGACTATTGCTGCGAGTGCTAAC CTATCTTCTGTGGAGATGCACAGCGTCTCACTCCGCACTTACGGACAAGCCAACACAACAGTGTTCTATGGTATC TTTGCCTTTGGTGCAACATTTTGGACGCCTTACATGTTAGGTGCGGGTTATGGGGACATGGGTCCCAACGTGGGC TATTTTTATGCAGGTGTCACCGTCGTCATCGCTATTTTAACCTTCTTGCTCGTGCCAGAGACTGCTGGAATTACA CTGGAACAGATTGACGAAGGTTTTGACTCGGGAATAAAGGCATGGAAAACGTCACTACCCAAGAATAGAGCTATT GCTTCCTCTCAGAAACGAAGTATGGCAGGTGGACACGTTGGAGCTTGA |
| Transcript | >Pro_DTO377G3_2|g3441.t1 ATGGATTTGCGACACGAAATTCCGAAAATAGAGCCTGGGTTGAGCTCTAATGACACACTCACCGATTCCATTACC CGAAACATTACCACAAAAAATGCTCCAAGCACGACCGGATCGATGCTGCGTCTTTCATTATGGGTCTCGTTTGCC GCATGGATCTCGAACTTCGACAACGGCTACGCCGGTACGGTGCTGATCATGCCGTCCTACAAACACGCCTTTGGA AGCTGCGTGCAAGTTATAGACCCGAATACGTATGCCGAAATTCGACATTGCTCATTGACGCCACTACAACAATCT CTTATCAGCCTCAACTTCTTGTTCGTTGCCATTGGAGGTGCGATTGCGGGCATGACCGGCCGATACTTCGGGCGC AGGGGGTCAATCCAAGCTGGATGTACATTGGCTATTATCGGTGCTGCTGGAATGCTTGGCACCAGCGGTAGCTTC TTGCGCTACATGGTGTGCAGATCGATCAGTGCTGTGGGAGTTGGACAGTTGATTGTATCCAGCGTCACTTATGGT TCTGAGTGCATTGTCGCCAACAAGCGCGGCCTGTCCTTAGGGTTGTATAATGTTGGACTTGCCGGAGGAAATCTT GCTGCTTCCGCGGTGTGTGCAGGTTCTGCTCGTCTAGAGGCAACCAATGACTGGCAGTGGAAGACACCCATTTTA TGCCAAATACCCTTGGGGGTTATTCTCGGTGCTGGGATTTTGATGCTTCCCGAGTCGCCGCGCTGGCTTATGATA CACGGTCGAGAGGAGGAGGCACGCAGCTCATTCGGCGTGCTATACTGCCAAAGTCCATATTCGCCGGAAATCACC ATGCAGATTGATGATATAAGAACCAACCTTGCAATCGAGCGTGCAAGCCTCAAATCTGTCTCATGCTTTGATATC TATCGCAGGAAGCATATCAGCCGTACCTTGATATCTGCTATGATCATGATTGGAATCGCCATTACTGGTATCCAA TTTGTACAACCATACGCTGCACTGTTCCTCAAAGGAGTTGGCATCAGTGACCCATATTTGATCAATGTTATCATC GGCTTGTGCATCCTAGGAGGATCATTTTTTGGTCCGTTCATTGTGGAATATGGCGGAAGAAGAATTGCCATGCTT TCCGGCTATATTGTCATGGCTGTCTGCATGCTCACTCTTTCCTCTGTGAGCACCGCTCTTGGAATGGATACAAGT GCAGAGATAGTTATCGTCGTTCTTCTGTGTTTGTGGGCTTTTGTCTTTGGTGGGACTATTGCTGCGAGTGCTAAC CTATCTTCTGTGGAGATGCACAGCGTCTCACTCCGCACTTACGGACAAGCCAACACAACAGTGTTCTATGGTATC TTTGCCTTTGGTGCAACATTTTGGACGCCTTACATGTTAGGTGCGGGTTATGGGGACATGGGTCCCAACGTGGGC TATTTTTATGCAGGTGTCACCGTCGTCATCGCTATTTTAACCTTCTTGCTCGTGCCAGAGACTGCTGGAATTACA CTGGAACAGATTGACGAAGGTTTTGACTCGGGAATAAAGGCATGGAAAACGTCACTACCCAAGAATAGAGCTATT GCTTCCTCTCAGAAACGAAGTATGGCAGGTGGACACGTTGGAGCTTGA |
| Gene | >Pro_DTO377G3_2|g3441.t1 ATGGATTTGCGACACGAAATTCCGAAAATAGAGCCTGGGTTGAGCTCTAATGACACACTCACCGATTCCATTACC CGAAACATTACCACAAAAAATGCTCCAAGCACGACCGGATCGATGCTGCGTCTTTCATTATGGGTCTCGTTTGCC GCATGGATCTCGAACTTCGACAACGGCTACGCCGGTACGGTGCTGATCATGCCGTCCTACAAACACGCCTTTGGA AGCTGCGTGCAAGTTATAGACCCGAATACGTATGCCGAAATTCGACATTGCTCATTGACGCCACTACAACAATCT CTTATCAGCCTCAACTTCTTGTTCGTTGCCATTGGAGGTGCGATTGCGGGCATGACCGGCCGATACTTCGGGCGC AGGGGGTCAATCCAAGCTGGATGTACATTGGCTATTATCGGTGCTGCTGGAATGCTTGGCACCAGCGGTAGCTTC TTGCGCTACATGGTGTGCAGATCGATCAGTGCTGTGGGAGTTGGACAGTTGATTGTATCCAGCGTCACTTATGGT TCTGAGTGCATTGTCGCCAACAAGCGCGGCCTGTCCTTAGGGTTGTATAATGTTGGACTTGCCGGAGGAAATCTT GCTGCTTCCGCGGTGTGTGCAGGTTCTGCTCGTCTAGAGGCAACCAATGACTGGCAGTGGAAGACACCCATTTTA TGCCAAATACCCTTGGGGGTTATTCTCGGTGCTGGGATTTTGATGCTTCCCGAGTCGCCGCGCTGGCTTATGATA CACGGTCGAGAGGAGGAGGCACGCAGCTCATTCGGCGTGCTATACTGCCAAAGTCCATATTCGCCGGAAATCACC ATGCAGATTGATGATATAAGAACCAACCTTGCAATCGAGCGTGCAAGCCTCAAATCTGTCTCATGCTTTGATATC TATCGCAGGAAGCATATCAGCCGTACCTTGATATCTGCTATGATCATGATTGGAATCGCCATTACTGGTATCCAA TTTGTACAACCATACGCTGCACTGTTCCTCAAAGGAGTTGGCATCAGTGACCCATATTTGATCAATGTTATCATC GGCTTGTGCATCCTAGGAGGATCATTTTTTGGTCCGTTCATTGTGGAATATGGCGGAAGAAGAATTGCCATGCTT TCCGGCTATATTGTCATGGCTGTCTGCATGCTCACTCTTTCCTCTGTGAGCACCGCTCTTGGAATGGATACAAGT GCAGAGATAGTTATCGTCGTTCTTCTGTGTTTGTGGGCTTTTGTCTTTGGTGGGACTATTGCTGCGAGTGCTAAC CTATCTTCTGTGGAGATGCACAGCGTCTCACTCCGCACTTACGGACAAGCCAACACAACAGTGTTCTATGGTATC TTTGCCTTTGGTGCAACATTTTGGACGCCTTACATGTTAGGTGCGGGTTATGGGGACATGGGTCCCAACGTGGGC TATTTTTATGCAGGTGTCACCGTCGTCATCGCTATTTTAACCTTCTTGCTCGTGCCAGAGACTGCTGGAATTACA CTGGAACAGATTGACGAAGGTTTTGACTCGGGAATAAAGGCATGGAAAACGTCACTACCCAAGAATAGAGCTATT GCTTCCTCTCAGAAACGAAGTATGGCAGGTGGACACGTTGGAGCTTGA |