© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3431.t1 |
| Gene name | |
| Location | scaffold_05:663933..665264 |
| Strand | - |
| Gene length (bp) | 1331 |
| Transcript length (bp) | 1215 |
| Coding sequence length (bp) | 1215 |
| Protein length (aa) | 405 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF11735 | CAP59_mtransfer | Cryptococcal mannosyltransferase 1 | 3.4E-89 | 55 | 305 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 32 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 13 | 35 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 64.66 | 38.28 | 91.04 |
| 5d_25C | Five days - 25 degrees Celsius | 40.92 | 22.21 | 59.62 |
| 7d_25C | Seven days - 25 degrees Celsius | 45.23 | 24.52 | 65.93 |
| 10d_25C | Ten days - 25 degrees Celsius | 19.85 | 8.97 | 30.73 |
| 7d_15C | Seven days - 15 degrees Celsius | 39.44 | 19.32 | 59.55 |
| 7d_30C | Seven days - 30 degrees Celsius | 33.08 | 17.32 | 48.84 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.052003 | no |
| 3d_25C | 7d_25C | 0.153845 | no |
| 3d_25C | 7d_15C | 0.057409 | no |
| 3d_25C | 7d_30C | 0.003625 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.772022 | no |
| 5d_25C | 7d_15C | 0.929633 | no |
| 5d_25C | 7d_30C | 0.481447 | no |
| 5d_25C | 10d_25C | 0.004045 | yes |
| 7d_25C | 7d_15C | 0.695518 | no |
| 7d_25C | 7d_30C | 0.255646 | no |
| 7d_25C | 10d_25C | 0.000700 | yes |
| 7d_15C | 7d_30C | 0.605044 | no |
| 7d_15C | 10d_25C | 0.009770 | yes |
| 7d_30C | 10d_25C | 0.067780 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3431.t1 MPILSASRRVLRYRIARALLIIFAIWNLAEIHLIQHRIHEVDHAIPRHRPQKQERIYIASINWNNELVLRSHWIK ALTQLVMRLGPENVFISIYESGSYDNTKGALRELDWELERMRVPRNITLSPVTHEDELAAPARGEGWIHTSNGKK QLRRVPYLARTRNLSLLPLRDLARQGITFDKVLFLNDVVFTPNDVLELLYTNNGEYGAACSLDFSKPPNYYDTFA LRDSEGHEPIMQTWPYFSSAVSRHAVKKLSPVPVTSCWNGMVAMPASPFIDSPPLRFRGIPDSLASYHLEGSECC LIHTDNPLSVEMGVYLNPLVRVGYSGAAYTAMHPVMNWLSAKAILQGLWVNRLRRLGVTSWLKEEVVRRRLNAWR ALSTRNEERGEICIINEMQILHRYGWAHV* |
| Coding | >Pro_DTO377G3_2|g3431.t1 ATGCCGATTTTGTCCGCCTCCCGACGAGTCCTCCGGTACCGCATCGCCCGAGCCCTGCTCATAATCTTCGCAATA TGGAATCTTGCCGAGATACATCTGATTCAACACCGAATTCACGAAGTAGATCACGCTATCCCCCGACACCGGCCG CAAAAGCAAGAACGAATATATATTGCAAGCATCAATTGGAACAATGAGCTCGTATTACGCAGTCACTGGATCAAG GCACTCACACAGCTGGTCATGAGGCTTGGTCCGGAAAATGTATTCATCAGCATCTACGAAAGCGGGAGCTATGAT AACACGAAAGGCGCGTTGAGAGAACTAGATTGGGAACTCGAGCGGATGCGGGTACCACGAAATATCACTTTGTCG CCTGTCACACATGAAGATGAACTAGCCGCACCGGCGAGGGGTGAGGGCTGGATTCACACTTCCAATGGGAAGAAA CAACTCAGACGAGTGCCGTATCTGGCGCGGACACGGAACTTAAGCTTGCTGCCTCTGCGAGATCTCGCACGACAG GGTATCACATTTGATAAAGTTCTGTTTCTGAATGATGTTGTCTTCACGCCGAACGACGTTCTTGAACTCCTATAT ACTAATAACGGCGAATACGGCGCTGCTTGCTCGTTGGATTTCTCTAAGCCTCCGAATTATTATGACACATTTGCT CTCCGGGATAGCGAGGGCCATGAACCCATCATGCAGACATGGCCCTATTTCAGCTCTGCGGTATCGCGACACGCC GTGAAAAAATTGTCTCCTGTTCCTGTAACGAGTTGTTGGAATGGCATGGTGGCAATGCCCGCAAGTCCATTCATC GACAGCCCACCACTTCGTTTCCGAGGCATCCCTGATTCACTGGCGAGCTATCATCTTGAAGGCTCGGAATGCTGT CTCATTCATACAGACAACCCACTATCAGTGGAAATGGGTGTTTATTTGAACCCTTTGGTGAGGGTTGGGTATAGC GGTGCCGCATATACAGCTATGCATCCGGTGATGAACTGGCTCTCTGCGAAAGCGATTCTACAAGGGTTGTGGGTC AATCGACTGCGCCGTTTGGGTGTCACTTCATGGCTGAAAGAAGAAGTAGTTCGAAGGCGGTTGAACGCCTGGAGA GCTTTGAGTACTAGGAATGAAGAACGTGGGGAGATTTGCATCATCAATGAGATGCAAATTCTGCATCGATACGGG TGGGCCCATGTGTGA |
| Transcript | >Pro_DTO377G3_2|g3431.t1 ATGCCGATTTTGTCCGCCTCCCGACGAGTCCTCCGGTACCGCATCGCCCGAGCCCTGCTCATAATCTTCGCAATA TGGAATCTTGCCGAGATACATCTGATTCAACACCGAATTCACGAAGTAGATCACGCTATCCCCCGACACCGGCCG CAAAAGCAAGAACGAATATATATTGCAAGCATCAATTGGAACAATGAGCTCGTATTACGCAGTCACTGGATCAAG GCACTCACACAGCTGGTCATGAGGCTTGGTCCGGAAAATGTATTCATCAGCATCTACGAAAGCGGGAGCTATGAT AACACGAAAGGCGCGTTGAGAGAACTAGATTGGGAACTCGAGCGGATGCGGGTACCACGAAATATCACTTTGTCG CCTGTCACACATGAAGATGAACTAGCCGCACCGGCGAGGGGTGAGGGCTGGATTCACACTTCCAATGGGAAGAAA CAACTCAGACGAGTGCCGTATCTGGCGCGGACACGGAACTTAAGCTTGCTGCCTCTGCGAGATCTCGCACGACAG GGTATCACATTTGATAAAGTTCTGTTTCTGAATGATGTTGTCTTCACGCCGAACGACGTTCTTGAACTCCTATAT ACTAATAACGGCGAATACGGCGCTGCTTGCTCGTTGGATTTCTCTAAGCCTCCGAATTATTATGACACATTTGCT CTCCGGGATAGCGAGGGCCATGAACCCATCATGCAGACATGGCCCTATTTCAGCTCTGCGGTATCGCGACACGCC GTGAAAAAATTGTCTCCTGTTCCTGTAACGAGTTGTTGGAATGGCATGGTGGCAATGCCCGCAAGTCCATTCATC GACAGCCCACCACTTCGTTTCCGAGGCATCCCTGATTCACTGGCGAGCTATCATCTTGAAGGCTCGGAATGCTGT CTCATTCATACAGACAACCCACTATCAGTGGAAATGGGTGTTTATTTGAACCCTTTGGTGAGGGTTGGGTATAGC GGTGCCGCATATACAGCTATGCATCCGGTGATGAACTGGCTCTCTGCGAAAGCGATTCTACAAGGGTTGTGGGTC AATCGACTGCGCCGTTTGGGTGTCACTTCATGGCTGAAAGAAGAAGTAGTTCGAAGGCGGTTGAACGCCTGGAGA GCTTTGAGTACTAGGAATGAAGAACGTGGGGAGATTTGCATCATCAATGAGATGCAAATTCTGCATCGATACGGG TGGGCCCATGTGTGA |
| Gene | >Pro_DTO377G3_2|g3431.t1 ATGCCGATTTTGTCCGCCTCCCGACGAGTCCTCCGGTACCGCATCGCCCGAGCCCTGCTCATAATCTTCGCAATA TGGAATCTTGCCGAGATACATCTGATTCAACACCGAATTCACGAAGTAGATCACGCTATCCCCCGACACCGGCCG CAAAAGCAAGAACGAATATATATTGCAAGCATCAATTGGAACAATGAGCTCGTATTACGCAGTCACTGGATCAAG GCACTCACACAGCTGGTCATGAGGCTTGGTCCGGAAAATGTATTCATCAGCATCTACGAAAGCGGGAGCTATGAT AACACGAAAGGCGCGTTGAGAGAACTAGATTGGGAACTCGAGCGGATGCGGGTACCACGAAATATCACTTTGTCG CCTGTCACACATGAAGATGAACTAGCCGCACCGGCGAGGGGTGAGGGCTGGATTCACACTTCCAATGGGAAGAAA CAACTCAGACGAGTGCCGTATCTGGCGCGGACACGGAACTTAAGCTTGCTGCCTCTGCGAGATCTCGCACGACAG GGTATCACATTTGATAAAGTTCTGTTTCTGAATGATGTTGTCTTCACGGTTCGTTTTAATCGTCCTATCTTCTGT GGAATGTTTATTCTAATGAAAGCCCTCTTCTGTGATTAGCCGAACGACGTTCTTGAACTCCTATATACTAATAAC GGCGAATACGGCGCTGCTTGCTCGTTGGATTTCTCTAAGCCTCCGAATTATTATGACACATTTGCTCTCCGGGAT AGCGAGGGCCATGAACCCATCATGCAGACATGGCCCTATTTCAGCTCTGCGGTATCGCGACACGCCGTGAAAAAA TTGTCTCCTGTTCCTGTAACGAGTTGTTGGAATGGCATGGGTGTGTGGACCTCCACTCTAGGAGAGTTGCATGAG CTAACATATATCTAGTGGCAATGCCCGCAAGTCCATTCATCGACAGCCCACCACTTCGTTTCCGAGGCATCCCTG ATTCACTGGCGAGCTATCATCTTGAAGGCTCGGAATGCTGTCTCATTCATACAGACAACCCACTATCAGTGGAAA TGGGTGTTTATTTGAACCCTTTGGTGAGGGTTGGGTATAGCGGTGCCGCATATACAGCTATGCATCCGGTGATGA ACTGGCTCTCTGCGAAAGCGATTCTACAAGGGTTGTGGGTCAATCGACTGCGCCGTTTGGGTGTCACTTCATGGC TGAAAGAAGAAGTAGTTCGAAGGCGGTTGAACGCCTGGAGAGCTTTGAGTACTAGGAATGAAGAACGTGGGGAGA TTTGCATCATCAATGAGATGCAAATTCTGCATCGATACGGGTGGGCCCATGTGTGA |