Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g3398.t1
Gene name
Locationscaffold_05:568571..569624
Strand-
Gene length (bp)1053
Transcript length (bp)999
Coding sequence length (bp)999
Protein length (aa) 333

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00642 zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar) 5.3E-09 167 191
PF14634 zf-RING_5 zinc-RING finger domain 1.4E-06 247 285
PF13923 zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger) 1.6E-06 247 284
PF13920 zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger) 1.9E-06 246 286
PF13445 zf-RING_UBOX RING-type zinc-finger 5.5E-06 247 281
PF00097 zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 1.6E-05 247 284

GO

GO Term Description Terminal node
GO:0046872 metal ion binding Yes
GO:0005488 binding No
GO:0043167 ion binding No
GO:0043169 cation binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 59 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g3398.t1
MSEETEVADAVPQVAFKKRSKGKANFRKKPATPPPASDSDSDFISSDDEEGRRIKRRRKNAAVTASSTNATRKQH
TDGPTAAVPAPLTSSNDATKASDWYDENLSEKNLLGTTRAKPAPSTSQLDGSYKGAANYQSFIQKNPDAPGKFGP
VKAATNVRTITVTDYAPDVCKDWKQTGYCGFGDSCKYLHSREAYKAGWELDRDWEVNTKGKQLTGRVISQRKGAG
KIDAEDDEDDEDELLESIPFACLICVKPYQEPIITKCGHYFCEACALQRYRKTPSCAACGEGTGGVFNVAKKLNT
LLNKKRERARRIREEAIAKGEEVSDEEGDDSD*
Coding >Pro_DTO377G3_2|g3398.t1
ATGAGCGAAGAAACAGAAGTCGCAGACGCTGTCCCCCAAGTCGCTTTCAAGAAACGCTCCAAGGGCAAAGCCAAC
TTTCGCAAGAAGCCCGCGACGCCACCTCCAGCTTCCGACTCCGATTCCGACTTTATATCATCAGATGACGAAGAA
GGGCGGCGAATCAAGAGGCGACGCAAGAATGCAGCTGTCACCGCATCATCGACAAATGCGACAAGGAAACAGCAC
ACAGACGGACCTACAGCAGCGGTTCCGGCTCCATTAACCTCGAGCAACGATGCCACCAAAGCTTCCGACTGGTAC
GATGAGAACTTGAGCGAGAAGAACCTATTGGGCACAACCCGGGCAAAACCAGCCCCCTCTACCTCACAGCTAGAC
GGAAGCTACAAGGGCGCCGCCAACTATCAATCTTTCATCCAGAAGAACCCCGATGCACCGGGGAAATTCGGTCCT
GTCAAAGCTGCGACCAATGTTAGGACTATTACAGTCACGGATTATGCCCCCGATGTGTGCAAGGATTGGAAACAA
ACTGGCTACTGTGGCTTTGGAGACAGTTGTAAATATCTCCATTCTCGCGAGGCATACAAGGCAGGATGGGAACTG
GATCGAGACTGGGAAGTCAACACCAAGGGCAAGCAATTAACCGGGCGAGTGATTTCCCAGCGAAAAGGTGCGGGC
AAAATCGACGCAGAAGATGATGAAGATGATGAGGATGAATTGCTAGAGAGCATCCCATTCGCCTGTCTCATCTGC
GTGAAGCCTTATCAAGAACCTATCATCACCAAATGTGGGCACTACTTCTGTGAAGCCTGTGCCCTACAGCGGTAC
CGGAAGACTCCCTCGTGTGCTGCGTGCGGCGAGGGGACTGGAGGTGTCTTTAACGTTGCAAAAAAGTTGAATACT
CTGCTGAACAAAAAGCGAGAACGTGCGCGCAGGATTCGAGAAGAGGCGATTGCAAAGGGGGAGGAGGTCAGCGAT
GAAGAGGGTGATGATAGTGATTAG
Transcript >Pro_DTO377G3_2|g3398.t1
ATGAGCGAAGAAACAGAAGTCGCAGACGCTGTCCCCCAAGTCGCTTTCAAGAAACGCTCCAAGGGCAAAGCCAAC
TTTCGCAAGAAGCCCGCGACGCCACCTCCAGCTTCCGACTCCGATTCCGACTTTATATCATCAGATGACGAAGAA
GGGCGGCGAATCAAGAGGCGACGCAAGAATGCAGCTGTCACCGCATCATCGACAAATGCGACAAGGAAACAGCAC
ACAGACGGACCTACAGCAGCGGTTCCGGCTCCATTAACCTCGAGCAACGATGCCACCAAAGCTTCCGACTGGTAC
GATGAGAACTTGAGCGAGAAGAACCTATTGGGCACAACCCGGGCAAAACCAGCCCCCTCTACCTCACAGCTAGAC
GGAAGCTACAAGGGCGCCGCCAACTATCAATCTTTCATCCAGAAGAACCCCGATGCACCGGGGAAATTCGGTCCT
GTCAAAGCTGCGACCAATGTTAGGACTATTACAGTCACGGATTATGCCCCCGATGTGTGCAAGGATTGGAAACAA
ACTGGCTACTGTGGCTTTGGAGACAGTTGTAAATATCTCCATTCTCGCGAGGCATACAAGGCAGGATGGGAACTG
GATCGAGACTGGGAAGTCAACACCAAGGGCAAGCAATTAACCGGGCGAGTGATTTCCCAGCGAAAAGGTGCGGGC
AAAATCGACGCAGAAGATGATGAAGATGATGAGGATGAATTGCTAGAGAGCATCCCATTCGCCTGTCTCATCTGC
GTGAAGCCTTATCAAGAACCTATCATCACCAAATGTGGGCACTACTTCTGTGAAGCCTGTGCCCTACAGCGGTAC
CGGAAGACTCCCTCGTGTGCTGCGTGCGGCGAGGGGACTGGAGGTGTCTTTAACGTTGCAAAAAAGTTGAATACT
CTGCTGAACAAAAAGCGAGAACGTGCGCGCAGGATTCGAGAAGAGGCGATTGCAAAGGGGGAGGAGGTCAGCGAT
GAAGAGGGTGATGATAGTGATTAG
Gene >Pro_DTO377G3_2|g3398.t1
ATGAGCGAAGAAACAGAAGTCGCAGACGCTGTCCCCCAAGTCGCTTTCAAGAAACGCTCCAAGGGCAAAGCCAAC
TTTCGCAAGAAGCCCGCGACGCCACCTCCAGCTTCCGACTCCGATTCCGACTTTATATCATCAGATGACGAAGAA
GGGCGGCGAATCAAGAGGCGACGCAAGAATGCAGCTGTCACCGCATCATCGACAAATGCGACAAGGAAACAGCAC
ACAGACGGACCTACAGCAGCGGTTCCGGCTCCATTAACCTCGAGCAACGATGCCACCAAAGCTTCCGACTGGTAC
GATGAGAACTTGAGCGAGAAGAACCTATTGGGCACAACCCGGGCAAAACCAGCCCCCTCTACCTCACAGCTAGAC
GGAAGCTACAAGGGCGCCGCCAACTATCAATCTTTCATCCAGAAGAACCCCGATGCACCGGGGAAATTCGGTCCT
GTCAAAGCTGCGACCAATGTTAGGACTATTACAGTCACGGATTATGCCCCCGATGTGTGCAAGGATTGGAAACAA
ACTGGCTACGTGAGTCACCCTCGCCTGTATCTATATGAATCGAGACTAACCATTTGAATTCAGTGTGGCTTTGGA
GACAGTTGTAAATATCTCCATTCTCGCGAGGCATACAAGGCAGGATGGGAACTGGATCGAGACTGGGAAGTCAAC
ACCAAGGGCAAGCAATTAACCGGGCGAGTGATTTCCCAGCGAAAAGGTGCGGGCAAAATCGACGCAGAAGATGAT
GAAGATGATGAGGATGAATTGCTAGAGAGCATCCCATTCGCCTGTCTCATCTGCGTGAAGCCTTATCAAGAACCT
ATCATCACCAAATGTGGGCACTACTTCTGTGAAGCCTGTGCCCTACAGCGGTACCGGAAGACTCCCTCGTGTGCT
GCGTGCGGCGAGGGGACTGGAGGTGTCTTTAACGTTGCAAAAAAGTTGAATACTCTGCTGAACAAAAAGCGAGAA
CGTGCGCGCAGGATTCGAGAAGAGGCGATTGCAAAGGGGGAGGAGGTCAGCGATGAAGAGGGTGATGATAGTGAT
TAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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