© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3393.t1 |
| Gene name | |
| Location | scaffold_05:556364..558181 |
| Strand | - |
| Gene length (bp) | 1817 |
| Transcript length (bp) | 1704 |
| Coding sequence length (bp) | 1704 |
| Protein length (aa) | 568 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 1.2E-18 | 136 | 397 |
| PF00083 | Sugar_tr | Sugar (and other) transporter | 2.4E-07 | 149 | 291 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 67 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 58 | 80 | 22 |
| 2 | 130 | 152 | 22 |
| 3 | 228 | 250 | 22 |
| 4 | 255 | 277 | 22 |
| 5 | 348 | 370 | 22 |
| 6 | 385 | 407 | 22 |
| 7 | 428 | 447 | 19 |
| 8 | 453 | 475 | 22 |
| 9 | 488 | 510 | 22 |
| 10 | 520 | 539 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 51.48 | 31.16 | 71.79 |
| 5d_25C | Five days - 25 degrees Celsius | 43.79 | 26.24 | 61.35 |
| 7d_25C | Seven days - 25 degrees Celsius | 40.54 | 24.18 | 56.90 |
| 10d_25C | Ten days - 25 degrees Celsius | 33.30 | 19.35 | 47.24 |
| 7d_15C | Seven days - 15 degrees Celsius | 61.08 | 37.14 | 85.03 |
| 7d_30C | Seven days - 30 degrees Celsius | 27.18 | 15.10 | 39.25 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.547156 | no |
| 3d_25C | 7d_25C | 0.319079 | no |
| 3d_25C | 7d_15C | 0.504261 | no |
| 3d_25C | 7d_30C | 0.001804 | yes |
| 3d_25C | 10d_25C | 0.041216 | yes |
| 5d_25C | 7d_25C | 0.802720 | no |
| 5d_25C | 7d_15C | 0.132943 | no |
| 5d_25C | 7d_30C | 0.032612 | yes |
| 5d_25C | 10d_25C | 0.256675 | no |
| 7d_25C | 7d_15C | 0.057236 | no |
| 7d_25C | 7d_30C | 0.081550 | no |
| 7d_25C | 10d_25C | 0.450199 | no |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.003197 | yes |
| 7d_30C | 10d_25C | 0.464748 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3393.t1 MENEELFVGDPDIAELHTARETRPIEHVTENTPLIDEADGLHRRSFDLTNNRPKGRRASIWWLLPFGVLFTLGFG GMAVPKINLVMSLICRDYLAEKTTQDPGFTYLPVIFGDNNPQCQIPQVQSLVAQFQLYLNLIAGILSALVSPRFG HLSDRYGRTKMIALGAMGAVLNEVITVIVAKWPERVSVNMLLVGAVMDGLGGSFTTAQALIHSYASDCTPTEKRS VAFGLFHGALFFGIAAGPGGAAFLIKHGGTLPVFYIALAFHATFCLSVFFIVPESLSKERQLAAREKHRLKIVDT DSPKWYSWRVWNPVNLFTPLSILMPAVGKPSALFPNRRGASPALRRNIILLAAIDTAVFGVALGTVQVIIIYAEY MFNWGSVESSLFVATVNVVRVINLFLVLPLISMFFRTPCVEDGNIRGSDMLDIVLIRTSIIFDILGYIGYALSKT PSIMVISGVVASLGGMGSAILQSSLTKHVPHERIGQMLGATGLLHALARVVAPTVFNLIYSLTVATLPQVVFVAL AAVFGVAFLMSLLIRSHVTLEAGPPTDLRLEEDADEHDGLLR* |
| Coding | >Pro_DTO377G3_2|g3393.t1 ATGGAGAACGAAGAACTCTTTGTGGGGGATCCCGATATTGCGGAGCTGCACACAGCTCGAGAGACTCGTCCGATT GAACATGTAACCGAAAACACGCCTCTAATTGATGAAGCCGATGGGCTGCATCGACGGTCTTTTGACCTTACGAAT AATCGGCCGAAAGGGAGGAGAGCGAGTATTTGGTGGCTGCTCCCATTTGGTGTCCTTTTTACCCTGGGTTTTGGT GGAATGGCTGTGCCCAAGATCAATTTGGTCATGTCGCTCATCTGCCGAGATTATCTCGCCGAGAAGACCACCCAA GACCCCGGATTCACCTATCTCCCTGTTATATTTGGGGATAATAATCCACAGTGCCAGATACCGCAAGTTCAGTCG TTGGTTGCTCAGTTCCAGCTCTATCTCAATCTTATTGCGGGTATTCTATCAGCCTTAGTGAGTCCCCGGTTCGGG CACTTATCCGATCGCTACGGGAGAACCAAAATGATCGCGCTGGGCGCGATGGGCGCGGTACTCAATGAGGTTATC ACTGTCATTGTGGCTAAATGGCCAGAGCGGGTCTCGGTCAATATGCTTCTAGTTGGAGCAGTCATGGATGGACTG GGTGGATCATTTACAACCGCACAGGCTTTGATCCATTCCTATGCCTCTGACTGCACGCCCACTGAAAAACGAAGC GTGGCATTCGGTCTCTTCCACGGTGCTTTGTTCTTTGGAATTGCAGCTGGACCAGGCGGTGCCGCATTTTTGATC AAGCATGGAGGCACGCTACCCGTCTTCTACATTGCGCTTGCATTCCATGCAACTTTCTGTCTATCGGTCTTCTTC ATCGTGCCTGAATCTTTGTCCAAGGAACGACAGCTCGCGGCCCGCGAGAAGCATCGCTTGAAAATTGTGGATACT GACTCTCCTAAATGGTACTCTTGGCGTGTCTGGAACCCAGTGAACTTGTTCACTCCGCTTTCAATTCTGATGCCC GCCGTTGGAAAGCCGAGTGCCTTGTTCCCCAACCGCCGCGGTGCCAGTCCGGCTCTACGCCGGAATATCATTCTG CTGGCTGCTATCGATACTGCTGTCTTTGGAGTCGCCCTGGGCACGGTACAGGTTATCATCATCTACGCCGAATAC ATGTTCAACTGGGGCAGCGTGGAGTCCAGTCTGTTTGTAGCGACCGTTAATGTGGTGCGAGTGATCAATCTTTTC CTGGTGCTTCCGCTTATATCCATGTTCTTCCGCACCCCGTGCGTGGAAGACGGAAACATTCGCGGCTCGGACATG CTGGACATTGTTCTAATCCGCACATCTATAATATTCGATATTTTGGGCTACATTGGCTATGCTCTGTCCAAGACA CCATCAATCATGGTGATTTCTGGTGTCGTCGCCTCGCTAGGTGGCATGGGTTCTGCAATTCTGCAGTCATCTCTG ACCAAGCATGTGCCGCATGAACGCATTGGACAGATGCTCGGCGCCACTGGTCTTTTGCATGCTCTTGCTCGAGTT GTTGCACCTACTGTATTTAACTTAATCTATAGTCTGACGGTTGCAACATTACCTCAGGTAGTGTTTGTGGCCCTT GCGGCTGTTTTTGGTGTAGCATTCCTCATGAGTCTGCTAATCAGGTCGCATGTTACCCTGGAGGCTGGTCCCCCT ACTGATCTAAGATTGGAAGAAGATGCCGACGAGCATGACGGGCTTTTGCGGTAA |
| Transcript | >Pro_DTO377G3_2|g3393.t1 ATGGAGAACGAAGAACTCTTTGTGGGGGATCCCGATATTGCGGAGCTGCACACAGCTCGAGAGACTCGTCCGATT GAACATGTAACCGAAAACACGCCTCTAATTGATGAAGCCGATGGGCTGCATCGACGGTCTTTTGACCTTACGAAT AATCGGCCGAAAGGGAGGAGAGCGAGTATTTGGTGGCTGCTCCCATTTGGTGTCCTTTTTACCCTGGGTTTTGGT GGAATGGCTGTGCCCAAGATCAATTTGGTCATGTCGCTCATCTGCCGAGATTATCTCGCCGAGAAGACCACCCAA GACCCCGGATTCACCTATCTCCCTGTTATATTTGGGGATAATAATCCACAGTGCCAGATACCGCAAGTTCAGTCG TTGGTTGCTCAGTTCCAGCTCTATCTCAATCTTATTGCGGGTATTCTATCAGCCTTAGTGAGTCCCCGGTTCGGG CACTTATCCGATCGCTACGGGAGAACCAAAATGATCGCGCTGGGCGCGATGGGCGCGGTACTCAATGAGGTTATC ACTGTCATTGTGGCTAAATGGCCAGAGCGGGTCTCGGTCAATATGCTTCTAGTTGGAGCAGTCATGGATGGACTG GGTGGATCATTTACAACCGCACAGGCTTTGATCCATTCCTATGCCTCTGACTGCACGCCCACTGAAAAACGAAGC GTGGCATTCGGTCTCTTCCACGGTGCTTTGTTCTTTGGAATTGCAGCTGGACCAGGCGGTGCCGCATTTTTGATC AAGCATGGAGGCACGCTACCCGTCTTCTACATTGCGCTTGCATTCCATGCAACTTTCTGTCTATCGGTCTTCTTC ATCGTGCCTGAATCTTTGTCCAAGGAACGACAGCTCGCGGCCCGCGAGAAGCATCGCTTGAAAATTGTGGATACT GACTCTCCTAAATGGTACTCTTGGCGTGTCTGGAACCCAGTGAACTTGTTCACTCCGCTTTCAATTCTGATGCCC GCCGTTGGAAAGCCGAGTGCCTTGTTCCCCAACCGCCGCGGTGCCAGTCCGGCTCTACGCCGGAATATCATTCTG CTGGCTGCTATCGATACTGCTGTCTTTGGAGTCGCCCTGGGCACGGTACAGGTTATCATCATCTACGCCGAATAC ATGTTCAACTGGGGCAGCGTGGAGTCCAGTCTGTTTGTAGCGACCGTTAATGTGGTGCGAGTGATCAATCTTTTC CTGGTGCTTCCGCTTATATCCATGTTCTTCCGCACCCCGTGCGTGGAAGACGGAAACATTCGCGGCTCGGACATG CTGGACATTGTTCTAATCCGCACATCTATAATATTCGATATTTTGGGCTACATTGGCTATGCTCTGTCCAAGACA CCATCAATCATGGTGATTTCTGGTGTCGTCGCCTCGCTAGGTGGCATGGGTTCTGCAATTCTGCAGTCATCTCTG ACCAAGCATGTGCCGCATGAACGCATTGGACAGATGCTCGGCGCCACTGGTCTTTTGCATGCTCTTGCTCGAGTT GTTGCACCTACTGTATTTAACTTAATCTATAGTCTGACGGTTGCAACATTACCTCAGGTAGTGTTTGTGGCCCTT GCGGCTGTTTTTGGTGTAGCATTCCTCATGAGTCTGCTAATCAGGTCGCATGTTACCCTGGAGGCTGGTCCCCCT ACTGATCTAAGATTGGAAGAAGATGCCGACGAGCATGACGGGCTTTTGCGGTAA |
| Gene | >Pro_DTO377G3_2|g3393.t1 ATGGAGAACGAAGAACTCTTTGTGGGGGATCCCGATATTGCGGAGCTGCACACAGCTCGAGAGACTCGTCCGATT GAACATGTAACCGAAAACACGCCTCTAATTGATGAAGCCGATGGGCTGCATCGACGGTCTTTTGACCTTACGAAT AATCGGCCGAAAGGGAGGAGAGCGAGTGTGAGTGACTGATTTACGACCAAAGCGTCGGAAACAACTGTCTAATCT GCAAACATGACAGATTTGGTGGCTGCTCCCATTTGGTGTCCTTTTTACCCTGGGTTTTGGTGGAATGGCTGTGCC CAAGATCAATTTGGTCATGTCGCTCATCTGCCGAGATTATCTCGCCGAGAAGACCACCCAAGACCCCGGATTCAC CTATCTCCCTGTTATATTTGGGGATAATAATCCACAGTGCCAGATACCGCAAGTTCAGTCGTTGGTTGCTCAGTT CCAGCTCTATCTCAATCTTATTGCGGGTATTCTATCAGCCTTAGTGAGTCCCCGGTTCGGGCACTTATCCGATCG CTACGGGAGAACCAAAATGATCGCGCTGGGCGCGATGGGCGCGGTACTCAATGAGGTTATCACTGTCATTGTGGC TAAATGGCCAGAGCGGGTCTCGGTCAATATGCTTCTAGTTGGAGCAGTCATGGATGGACTGGGTGGATCATTTAC AACCGCACAGGCTTTGATCCATTCCTATGCCTCTGACTGCACGCCCACTGAAAAACGAAGCGTGGCATTCGGTCT CTTCCACGGTGCTTTGTTCTTTGGAATTGCAGCTGGACCAGGCGGTGCCGCATTTTTGATCAAGCATGGAGGCAC GCTACCCGTCTTCTACATTGCGCTTGCATTCCATGCAACTTTCTGTCTATCGGTCTTCTTCATCGTGCCTGAATC TTTGTCCAAGGAACGACAGCTCGCGGCCCGCGAGAAGCATCGCTTGAAAATTGTGGATACTGACTCTCCTAAATG GTACTCTTGGCGTGTCTGGAACCCAGTGAACTTGTTCACTCCGCTTTCAATTCTGATGCCCGCCGTTGGAAAGCC GAGTGCCTTGTTCCCCAACCGCCGCGGTGCCAGTCCGGCTCTACGCCGGAATATCATTCTGCTGGCTGCTATCGA TACTGCTGTCTTTGGAGTCGCCCTGGGCACGGTACAGGTTATCATCATCTACGCCGAATACATGTTCAACTGGGG CAGCGTGGAGTCCAGTCTGTTTGTAGCGACCGTTAATGTGGTGCGAGTGATCAATCTTTTCCTGGTGCTTCCGCT TATATCCATGTTCTTCCGCACCCCGTGCGTGGAAGACGGAAACATTCGCGGCTCGGACATGCTGGACATTGTTCT AATCCGCACATCTATAATATTCGATATTTTGGGCTACATTGGCTATGCTCTGTCCAAGACACCATCAATCATGGT GATTTCTGGTGTCGTCGCCTCGCTAGGTGGCATGGGTTCTGCAATTCTGCAGTCATCTCTGACCAAGCATGTGCC GCATGAACGCATTGGACAGATGCTCGGCGCCACTGGTCTTTTGCATGCTCTTGCTCGAGTTGTTGCACCTACTGT ATTTAACTTAATCTATAGTCTGACGGTTGCAACATTACCTCAGGTAGTGTTTGTGGCCCTTGCGGCTGTTTTTGG TGTAGCATTCCTCATGAGTCTGCTAATCAGGTCGCATGGTATGTTTATTCTCCCGATCTCCTACAAGAAGTATAC TAATTACTGTGACAGTTACCCTGGAGGCTGGTCCCCCTACTGATCTAAGATTGGAAGAAGATGCCGACGAGCATG ACGGGCTTTTGCGGTAA |