© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3388.t1 |
| Gene name | |
| Location | scaffold_05:538068..539463 |
| Strand | + |
| Gene length (bp) | 1395 |
| Transcript length (bp) | 1281 |
| Coding sequence length (bp) | 1281 |
| Protein length (aa) | 427 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF06027 | SLC35F | Solute carrier family 35 | 6.1E-98 | 63 | 362 |
| PF08627 | CRT-like | CRT-like, chloroquine-resistance transporter-like | 2.3E-07 | 135 | 218 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 57 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 69 | 91 | 22 |
| 2 | 96 | 118 | 22 |
| 3 | 139 | 161 | 22 |
| 4 | 166 | 185 | 19 |
| 5 | 192 | 214 | 22 |
| 6 | 229 | 248 | 19 |
| 7 | 253 | 275 | 22 |
| 8 | 290 | 312 | 22 |
| 9 | 319 | 336 | 17 |
| 10 | 341 | 363 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3388.t1 MSESKDQITVQASGVEHGSSTNSLAKDAQTGAQSSSSQVEASECPVQPADLVDQKKGAFGYFKTKEFYITVLLGQ ILAIANTSTGTFTTLLGEEQWAIPAFQTFINYVLLNVIFTPYTMYRYGFKGWLRLVYRDGWKYIILAFCDVEGNY FIVLAYQYTTMLSAQLINFWAIVVVVVISFLFLGVRYHIAQIIGILLCIGGMGVLIGSDHITGTNGGDISQGNQL KGDMFALLAASFYGLTNTGEEYFVSTRPVYEVLGQMSFFGMIINGAQAGIFDRTSFHNAHWNGKVGGYLTGYTLC LSMFYCLAPLLFRLSSAAFFNVSMLTMNFWGVIIGVKVFHYHIHWMYPIAFVLIIIGQLIYFLAQKVLSEARKPW LGANQERGVVGLFTAKRKIVHVIPTAAEFQDQTQTPDDTSKHTPTVNTSAI* |
| Coding | >Pro_DTO377G3_2|g3388.t1 ATGTCTGAGTCGAAGGACCAAATCACCGTCCAGGCATCTGGTGTCGAACATGGCAGCTCTACCAATTCACTGGCT AAGGATGCTCAAACGGGTGCACAAAGTTCGAGTTCCCAGGTGGAAGCCTCCGAGTGCCCTGTGCAACCTGCGGAT CTGGTCGATCAGAAGAAAGGAGCTTTTGGCTACTTTAAGACTAAAGAATTCTATATTACCGTGCTTCTAGGTCAA ATTCTCGCTATTGCCAATACCTCGACGGGTACCTTCACAACGCTACTCGGCGAGGAACAATGGGCAATCCCTGCG TTCCAGACCTTCATAAACTATGTGCTACTCAACGTTATCTTTACTCCTTATACGATGTACCGTTACGGCTTCAAG GGCTGGCTCCGACTGGTATACCGTGACGGCTGGAAATACATCATCCTTGCTTTCTGTGACGTGGAAGGCAACTAC TTCATTGTGCTGGCATACCAATACACAACCATGCTAAGCGCGCAACTGATCAACTTCTGGGCCATCGTCGTGGTC GTCGTCATCTCATTCCTGTTTCTGGGTGTGCGCTACCACATCGCTCAAATAATTGGTATCTTGCTTTGTATCGGC GGAATGGGCGTCCTCATCGGCTCAGACCACATCACCGGCACGAACGGCGGAGACATATCCCAAGGCAACCAGCTG AAAGGCGACATGTTCGCGCTGCTAGCCGCGTCCTTCTATGGCCTCACCAACACGGGCGAAGAGTACTTCGTCAGC ACTCGGCCAGTGTACGAGGTGCTCGGGCAGATGTCATTCTTCGGAATGATTATCAACGGCGCGCAGGCCGGCATC TTCGACCGGACCTCCTTCCACAATGCGCACTGGAACGGAAAGGTCGGTGGATATCTCACCGGGTACACGCTGTGT CTGAGTATGTTCTACTGTCTCGCTCCGCTGTTGTTCCGTCTCTCGTCGGCGGCTTTCTTCAACGTCTCCATGCTC ACCATGAACTTCTGGGGTGTGATCATTGGCGTCAAGGTCTTCCATTATCATATCCACTGGATGTACCCGATTGCC TTTGTGCTGATTATCATCGGCCAGCTGATCTATTTCCTGGCCCAGAAGGTCTTGAGTGAAGCCCGCAAGCCCTGG CTTGGAGCTAACCAGGAGCGTGGTGTTGTCGGTCTCTTCACTGCCAAGAGGAAGATCGTGCATGTCATCCCTACC GCTGCCGAATTTCAGGATCAAACTCAAACCCCCGACGACACCTCAAAACACACTCCCACGGTGAATACCAGCGCT ATTTGA |
| Transcript | >Pro_DTO377G3_2|g3388.t1 ATGTCTGAGTCGAAGGACCAAATCACCGTCCAGGCATCTGGTGTCGAACATGGCAGCTCTACCAATTCACTGGCT AAGGATGCTCAAACGGGTGCACAAAGTTCGAGTTCCCAGGTGGAAGCCTCCGAGTGCCCTGTGCAACCTGCGGAT CTGGTCGATCAGAAGAAAGGAGCTTTTGGCTACTTTAAGACTAAAGAATTCTATATTACCGTGCTTCTAGGTCAA ATTCTCGCTATTGCCAATACCTCGACGGGTACCTTCACAACGCTACTCGGCGAGGAACAATGGGCAATCCCTGCG TTCCAGACCTTCATAAACTATGTGCTACTCAACGTTATCTTTACTCCTTATACGATGTACCGTTACGGCTTCAAG GGCTGGCTCCGACTGGTATACCGTGACGGCTGGAAATACATCATCCTTGCTTTCTGTGACGTGGAAGGCAACTAC TTCATTGTGCTGGCATACCAATACACAACCATGCTAAGCGCGCAACTGATCAACTTCTGGGCCATCGTCGTGGTC GTCGTCATCTCATTCCTGTTTCTGGGTGTGCGCTACCACATCGCTCAAATAATTGGTATCTTGCTTTGTATCGGC GGAATGGGCGTCCTCATCGGCTCAGACCACATCACCGGCACGAACGGCGGAGACATATCCCAAGGCAACCAGCTG AAAGGCGACATGTTCGCGCTGCTAGCCGCGTCCTTCTATGGCCTCACCAACACGGGCGAAGAGTACTTCGTCAGC ACTCGGCCAGTGTACGAGGTGCTCGGGCAGATGTCATTCTTCGGAATGATTATCAACGGCGCGCAGGCCGGCATC TTCGACCGGACCTCCTTCCACAATGCGCACTGGAACGGAAAGGTCGGTGGATATCTCACCGGGTACACGCTGTGT CTGAGTATGTTCTACTGTCTCGCTCCGCTGTTGTTCCGTCTCTCGTCGGCGGCTTTCTTCAACGTCTCCATGCTC ACCATGAACTTCTGGGGTGTGATCATTGGCGTCAAGGTCTTCCATTATCATATCCACTGGATGTACCCGATTGCC TTTGTGCTGATTATCATCGGCCAGCTGATCTATTTCCTGGCCCAGAAGGTCTTGAGTGAAGCCCGCAAGCCCTGG CTTGGAGCTAACCAGGAGCGTGGTGTTGTCGGTCTCTTCACTGCCAAGAGGAAGATCGTGCATGTCATCCCTACC GCTGCCGAATTTCAGGATCAAACTCAAACCCCCGACGACACCTCAAAACACACTCCCACGGTGAATACCAGCGCT ATTTGA |
| Gene | >Pro_DTO377G3_2|g3388.t1 ATGTCTGAGTCGAAGGACCAAATCACCGTCCAGGCATCTGGTGTCGAACATGGCAGCTCTACCAATTCACTGGCT AAGGATGCTCAAACGGGTGCACAAAGTTCGAGTTCCCAGGTGGAAGCCTCCGAGTGCCCTGTGCAACCTGCGGAT CTGGTCGATCAGAAGAAAGGAGCTTTTGGCTACTTTAAGACTAAAGAATTCTATATTACCGTGCTTCTAGGGTAA GAACCAGTTCAAACACTGCAGCTCAACCCTCAAACCCTAACCCAAATGCTCCTAGTCAAATTCTCGCTATTGCCA ATACCTCGACGGGTACCTTCACAACGCTACTCGGCGAGGAACAATGGGCAATCCCTGCGTTCCAGACCTTCATAA ACTATGTGCTACTCAACGTTATCTTTACTCCTTATACGATGTACCGTTACGGCTTCAAGGGCTGGCTCCGACTGG TATACCGTGACGGCTGGAAATGTATGCCCCAGTTTCCCCTCCCACATATCCAATATACAACGACTAACCGCTGCA GACATCATCCTTGCTTTCTGTGACGTGGAAGGCAACTACTTCATTGTGCTGGCATACCAATACACAACCATGCTA AGCGCGCAACTGATCAACTTCTGGGCCATCGTCGTGGTCGTCGTCATCTCATTCCTGTTTCTGGGTGTGCGCTAC CACATCGCTCAAATAATTGGTATCTTGCTTTGTATCGGCGGAATGGGCGTCCTCATCGGCTCAGACCACATCACC GGCACGAACGGCGGAGACATATCCCAAGGCAACCAGCTGAAAGGCGACATGTTCGCGCTGCTAGCCGCGTCCTTC TATGGCCTCACCAACACGGGCGAAGAGTACTTCGTCAGCACTCGGCCAGTGTACGAGGTGCTCGGGCAGATGTCA TTCTTCGGAATGATTATCAACGGCGCGCAGGCCGGCATCTTCGACCGGACCTCCTTCCACAATGCGCACTGGAAC GGAAAGGTCGGTGGATATCTCACCGGGTACACGCTGTGTCTGAGTATGTTCTACTGTCTCGCTCCGCTGTTGTTC CGTCTCTCGTCGGCGGCTTTCTTCAACGTCTCCATGCTCACCATGAACTTCTGGGGTGTGATCATTGGCGTCAAG GTCTTCCATTATCATATCCACTGGATGTACCCGATTGCCTTTGTGCTGATTATCATCGGCCAGCTGATCTATTTC CTGGCCCAGAAGGTCTTGAGTGAAGCCCGCAAGCCCTGGCTTGGAGCTAACCAGGAGCGTGGTGTTGTCGGTCTC TTCACTGCCAAGAGGAAGATCGTGCATGTCATCCCTACCGCTGCCGAATTTCAGGATCAAACTCAAACCCCCGAC GACACCTCAAAACACACTCCCACGGTGAATACCAGCGCTATTTGA |