Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g336.t1
Gene name
Locationscaffold_01:848469..849557
Strand-
Gene length (bp)1088
Transcript length (bp)972
Coding sequence length (bp)972
Protein length (aa) 324

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04641 Rtf2 Rtf2 RING-finger 1.5E-63 1 306

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 12 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g336.t1
MGNDGGSIPTRRELVREAARAPSTAQVKETQREQQEHSWTTCPLSHKSLSRPIVSDSVGNLYNKDAILQFLLPGD
DVEGISSKADCEEILCGRVKSLRDVVEMKFEIDTELPEHPSGRAYAPRERREGWICPVTAKPLGPSVKSVYLVPC
GHVFAEEAIRQLKGDKCLQCNEPYIEDNIINILTTKKEDKERLIARGHKLAEQGLTHSLKKAPGSKKRKKNASAE
GVADAPGTIEPAGLVVPKQSSDPKSRSNTSTPVPNTASSNGIKNAATSSLTARVLAEENEKKKRRKMMGGNENLD
SLFTKKDGGSKNRDFMTRGFSIS*
Coding >Pro_DTO377G3_2|g336.t1
ATGGGTAATGATGGTGGCAGTATTCCGACTCGCCGCGAGCTCGTTCGCGAGGCAGCCCGTGCCCCGAGCACGGCG
CAAGTAAAAGAGACTCAGCGCGAGCAGCAAGAGCACTCCTGGACTACTTGCCCGCTCTCACACAAGTCCCTCTCT
CGGCCAATTGTATCAGACTCAGTCGGAAATCTTTATAACAAGGACGCCATTCTCCAGTTCCTGCTTCCCGGCGAC
GATGTCGAGGGGATCAGCTCTAAGGCAGACTGCGAGGAGATTCTATGCGGGCGAGTGAAGTCGCTCCGGGATGTG
GTTGAGATGAAGTTCGAAATCGACACTGAGCTCCCCGAGCACCCCTCAGGCCGTGCTTATGCGCCCCGTGAGCGT
CGCGAGGGCTGGATCTGCCCGGTCACCGCCAAGCCGTTGGGCCCGAGTGTGAAGTCTGTGTACCTGGTGCCGTGT
GGACATGTATTTGCAGAGGAGGCTATCCGACAGCTCAAAGGCGACAAGTGCTTACAGTGCAACGAACCCTACATC
GAAGACAATATCATTAACATCCTTACCACCAAAAAAGAAGATAAGGAACGTCTGATTGCGCGAGGCCATAAACTC
GCTGAACAAGGCCTAACGCATTCCCTCAAGAAAGCCCCCGGCTCAAAGAAGCGCAAGAAGAACGCCTCCGCGGAG
GGAGTAGCTGATGCTCCCGGTACCATAGAGCCTGCTGGATTGGTAGTACCTAAGCAATCCTCGGATCCTAAAAGT
CGAAGCAACACTTCCACACCAGTGCCTAATACTGCTTCTAGCAATGGAATCAAGAACGCCGCTACTTCTTCGCTC
ACTGCCCGTGTGTTGGCGGAGGAGAATGAGAAGAAGAAGCGCCGGAAGATGATGGGTGGGAATGAGAATCTCGAC
AGTCTCTTCACGAAGAAGGACGGCGGGTCCAAGAATCGTGATTTCATGACAAGAGGATTTTCTATATCATGA
Transcript >Pro_DTO377G3_2|g336.t1
ATGGGTAATGATGGTGGCAGTATTCCGACTCGCCGCGAGCTCGTTCGCGAGGCAGCCCGTGCCCCGAGCACGGCG
CAAGTAAAAGAGACTCAGCGCGAGCAGCAAGAGCACTCCTGGACTACTTGCCCGCTCTCACACAAGTCCCTCTCT
CGGCCAATTGTATCAGACTCAGTCGGAAATCTTTATAACAAGGACGCCATTCTCCAGTTCCTGCTTCCCGGCGAC
GATGTCGAGGGGATCAGCTCTAAGGCAGACTGCGAGGAGATTCTATGCGGGCGAGTGAAGTCGCTCCGGGATGTG
GTTGAGATGAAGTTCGAAATCGACACTGAGCTCCCCGAGCACCCCTCAGGCCGTGCTTATGCGCCCCGTGAGCGT
CGCGAGGGCTGGATCTGCCCGGTCACCGCCAAGCCGTTGGGCCCGAGTGTGAAGTCTGTGTACCTGGTGCCGTGT
GGACATGTATTTGCAGAGGAGGCTATCCGACAGCTCAAAGGCGACAAGTGCTTACAGTGCAACGAACCCTACATC
GAAGACAATATCATTAACATCCTTACCACCAAAAAAGAAGATAAGGAACGTCTGATTGCGCGAGGCCATAAACTC
GCTGAACAAGGCCTAACGCATTCCCTCAAGAAAGCCCCCGGCTCAAAGAAGCGCAAGAAGAACGCCTCCGCGGAG
GGAGTAGCTGATGCTCCCGGTACCATAGAGCCTGCTGGATTGGTAGTACCTAAGCAATCCTCGGATCCTAAAAGT
CGAAGCAACACTTCCACACCAGTGCCTAATACTGCTTCTAGCAATGGAATCAAGAACGCCGCTACTTCTTCGCTC
ACTGCCCGTGTGTTGGCGGAGGAGAATGAGAAGAAGAAGCGCCGGAAGATGATGGGTGGGAATGAGAATCTCGAC
AGTCTCTTCACGAAGAAGGACGGCGGGTCCAAGAATCGTGATTTCATGACAAGAGGATTTTCTATATCATGA
Gene >Pro_DTO377G3_2|g336.t1
ATGGGTAATGATGGTGGCAGGTAAGCGACTCTATTATAAATGTGCCATAGACTCAAAAATTCTAACACAAAGCTT
TTTAGTATTCCGACTCGCCGCGAGCTCGTTCGCGAGGCAGCCCGTGCCCCGAGCACGGCGCAAGTAAAAGAGACT
CAGCGCGAGCAGCAAGAGCACTCCTGGACTACTTGCCCGCTCTCACACAAGTCCCTCTCTCGGCCAATTGTATCA
GACTCAGTCGGAAATCTTTATAACAAGGACGCCATTCTCCAGTTCCTGCTTCCCGGCGACGATGTCGAGGGGATC
AGCTCTAAGGCAGACTGCGAGGAGATTCTATGCGGGCGAGTGAAGTCGCTCCGGGATGTGGTTGAGATGAAGTTC
GAAATCGACACTGAGCTCCCCGAGCACCCCTCAGGCCGTGCTTATGCGCCCCGTGAGCGTCGCGAGGGCTGGATC
TGCCCGGTCACCGCCAAGCCGTTGGGCCCGAGTGTGAAGTCTGTGTACCTGGTGCCGTGTGGACATGTATTTGCA
GAGGAGGCTATCCGACAGCTCAAAGGCGACAAGTGCTTACAGGTAAGAATCATGTCTTTGATACAAAGCGGAAAT
AGTGGCTGACGTGTGTGTGCTAGTGCAACGAACCCTACATCGAAGACAATATCATTAACATCCTTACCACCAAAA
AAGAAGATAAGGAACGTCTGATTGCGCGAGGCCATAAACTCGCTGAACAAGGCCTAACGCATTCCCTCAAGAAAG
CCCCCGGCTCAAAGAAGCGCAAGAAGAACGCCTCCGCGGAGGGAGTAGCTGATGCTCCCGGTACCATAGAGCCTG
CTGGATTGGTAGTACCTAAGCAATCCTCGGATCCTAAAAGTCGAAGCAACACTTCCACACCAGTGCCTAATACTG
CTTCTAGCAATGGAATCAAGAACGCCGCTACTTCTTCGCTCACTGCCCGTGTGTTGGCGGAGGAGAATGAGAAGA
AGAAGCGCCGGAAGATGATGGGTGGGAATGAGAATCTCGACAGTCTCTTCACGAAGAAGGACGGCGGGTCCAAGA
ATCGTGATTTCATGACAAGAGGATTTTCTATATCATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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