© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3358.t1 |
| Gene name | |
| Location | scaffold_05:443155..444479 |
| Strand | + |
| Gene length (bp) | 1324 |
| Transcript length (bp) | 1269 |
| Coding sequence length (bp) | 1269 |
| Protein length (aa) | 423 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03330 | DPBB_1 | Lytic transglycolase | 3.1E-08 | 255 | 319 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 21 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 1.19 | 0.00 | 2.39 |
| 5d_25C | Five days - 25 degrees Celsius | 1.75 | 0.23 | 3.28 |
| 7d_25C | Seven days - 25 degrees Celsius | 2.51 | 0.41 | 4.60 |
| 10d_25C | Ten days - 25 degrees Celsius | 2.52 | 0.49 | 4.54 |
| 7d_15C | Seven days - 15 degrees Celsius | 2.65 | 0.52 | 4.78 |
| 7d_30C | Seven days - 30 degrees Celsius | 3.00 | 0.65 | 5.36 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.551959 | no |
| 3d_25C | 7d_25C | 0.165703 | no |
| 3d_25C | 7d_15C | 0.135151 | no |
| 3d_25C | 7d_30C | 0.078790 | no |
| 3d_25C | 10d_25C | 0.166610 | no |
| 5d_25C | 7d_25C | 0.522791 | no |
| 5d_25C | 7d_15C | 0.450309 | no |
| 5d_25C | 7d_30C | 0.285957 | no |
| 5d_25C | 10d_25C | 0.521135 | no |
| 7d_25C | 7d_15C | 0.936463 | no |
| 7d_25C | 7d_30C | 0.757563 | no |
| 7d_25C | 10d_25C | 0.994236 | no |
| 7d_15C | 7d_30C | 0.840074 | no |
| 7d_15C | 10d_25C | 0.940211 | no |
| 7d_30C | 10d_25C | 0.763145 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3358.t1 MKYLQLASVAALLGAATVSAGPLRAREHDGFCPKGYTMSVYYKTITVDTYSSATSVETTVTPTATPVSVESQSSA DPTVASSSTAVAVVSSTPVAVVSVETTTSSASATPVVPVETTSSSASAAETAFIQKAASKTDSVVATASTETAAV VQTIAAPVVKSIAAQTSTTQAAVEATSTSTSSIISSSTTTSSATTSSTTSSSTTSSAASSSTTSSSAISVSLGAS IAGEATFYGGNVGGGTCSFSGYTLPSNLFGTALSLQRWDDAANCGTCVSVTGPSGNSITAMIVDQCPECESDHLD LFHEAFAELADTSLGVIETTWSYVSCDLDGPLQLKNKDGTGPYWFSMQVVNANEAVTALDVSTDGGSTWQGTTRT YYNFFEYDAGFRTSTVDVRVTGASGNTVIVQDVAVVSGTSVTAASNL* |
| Coding | >Pro_DTO377G3_2|g3358.t1 ATGAAGTACCTTCAGCTGGCCTCTGTGGCCGCTCTTCTCGGCGCTGCTACTGTGTCTGCCGGCCCATTGCGCGCC CGCGAACATGACGGATTCTGCCCGAAGGGCTATACTATGAGCGTCTATTATAAGACCATCACTGTGGATACCTAT TCCTCGGCGACCTCTGTGGAGACTACAGTTACCCCGACGGCTACTCCGGTTAGCGTCGAGTCTCAGTCCTCCGCT GATCCCACAGTGGCCTCGTCGTCTACTGCCGTTGCCGTGGTGTCTTCGACCCCCGTCGCAGTTGTCTCAGTCGAG ACTACGACTTCTTCGGCCTCTGCTACCCCGGTTGTCCCAGTCGAGACTACATCCTCGTCAGCCTCTGCTGCCGAG ACCGCATTTATCCAGAAGGCAGCTTCCAAGACCGACTCAGTTGTGGCCACTGCATCAACTGAGACTGCCGCTGTC GTCCAGACCATTGCTGCTCCAGTCGTGAAGAGCATCGCCGCGCAGACCTCCACCACTCAAGCTGCCGTCGAAGCT ACCAGCACTTCTACCTCTTCCATTATTTCCTCTTCCACTACCACTTCTTCCGCTACCACCTCTTCCACTACATCC TCCTCCACTACCTCCTCCGCTGCCTCCTCTTCCACCACCTCCTCTTCCGCCATCTCTGTATCTCTCGGTGCCTCC ATTGCCGGCGAAGCTACCTTCTACGGCGGCAATGTCGGCGGCGGAACATGCTCGTTCTCCGGCTACACCCTCCCG AGCAACCTCTTCGGCACAGCCCTCTCCCTCCAGCGCTGGGATGACGCAGCCAACTGCGGCACCTGTGTATCCGTC ACCGGCCCGAGTGGTAACTCCATCACCGCAATGATCGTCGACCAATGCCCCGAATGCGAAAGCGACCACCTCGAC CTCTTCCACGAAGCCTTCGCCGAGCTCGCAGATACATCCCTCGGCGTCATCGAGACGACCTGGTCATACGTGTCC TGCGACCTGGACGGACCTCTCCAGCTCAAGAACAAGGACGGCACCGGCCCGTACTGGTTCTCGATGCAGGTTGTT AATGCCAACGAGGCTGTGACTGCATTGGATGTTAGCACCGATGGCGGTAGTACGTGGCAGGGCACGACCCGCACG TACTACAACTTCTTCGAGTACGATGCTGGGTTCAGGACTAGCACTGTTGATGTGCGGGTTACTGGTGCTAGTGGC AACACTGTTATTGTTCAGGATGTCGCGGTTGTGTCTGGCACTTCGGTTACTGCTGCGTCGAACTTGTAG |
| Transcript | >Pro_DTO377G3_2|g3358.t1 ATGAAGTACCTTCAGCTGGCCTCTGTGGCCGCTCTTCTCGGCGCTGCTACTGTGTCTGCCGGCCCATTGCGCGCC CGCGAACATGACGGATTCTGCCCGAAGGGCTATACTATGAGCGTCTATTATAAGACCATCACTGTGGATACCTAT TCCTCGGCGACCTCTGTGGAGACTACAGTTACCCCGACGGCTACTCCGGTTAGCGTCGAGTCTCAGTCCTCCGCT GATCCCACAGTGGCCTCGTCGTCTACTGCCGTTGCCGTGGTGTCTTCGACCCCCGTCGCAGTTGTCTCAGTCGAG ACTACGACTTCTTCGGCCTCTGCTACCCCGGTTGTCCCAGTCGAGACTACATCCTCGTCAGCCTCTGCTGCCGAG ACCGCATTTATCCAGAAGGCAGCTTCCAAGACCGACTCAGTTGTGGCCACTGCATCAACTGAGACTGCCGCTGTC GTCCAGACCATTGCTGCTCCAGTCGTGAAGAGCATCGCCGCGCAGACCTCCACCACTCAAGCTGCCGTCGAAGCT ACCAGCACTTCTACCTCTTCCATTATTTCCTCTTCCACTACCACTTCTTCCGCTACCACCTCTTCCACTACATCC TCCTCCACTACCTCCTCCGCTGCCTCCTCTTCCACCACCTCCTCTTCCGCCATCTCTGTATCTCTCGGTGCCTCC ATTGCCGGCGAAGCTACCTTCTACGGCGGCAATGTCGGCGGCGGAACATGCTCGTTCTCCGGCTACACCCTCCCG AGCAACCTCTTCGGCACAGCCCTCTCCCTCCAGCGCTGGGATGACGCAGCCAACTGCGGCACCTGTGTATCCGTC ACCGGCCCGAGTGGTAACTCCATCACCGCAATGATCGTCGACCAATGCCCCGAATGCGAAAGCGACCACCTCGAC CTCTTCCACGAAGCCTTCGCCGAGCTCGCAGATACATCCCTCGGCGTCATCGAGACGACCTGGTCATACGTGTCC TGCGACCTGGACGGACCTCTCCAGCTCAAGAACAAGGACGGCACCGGCCCGTACTGGTTCTCGATGCAGGTTGTT AATGCCAACGAGGCTGTGACTGCATTGGATGTTAGCACCGATGGCGGTAGTACGTGGCAGGGCACGACCCGCACG TACTACAACTTCTTCGAGTACGATGCTGGGTTCAGGACTAGCACTGTTGATGTGCGGGTTACTGGTGCTAGTGGC AACACTGTTATTGTTCAGGATGTCGCGGTTGTGTCTGGCACTTCGGTTACTGCTGCGTCGAACTTGTAG |
| Gene | >Pro_DTO377G3_2|g3358.t1 ATGAAGTACCTTCAGCTGGCCTCTGTGGCCGCTCTTCTCGGCGCTGCTACTGTGTCTGCCGGCCCATTGCGCGCC CGCGAACATGACGGATTCTGCCCGAAGGGCTATACTATGAGCGTCTATTATAAGACCATCACTGTGGATACCTAT TCCTCGGCGACCTCTGTGGAGACTACAGTTACCCCGACGGCTACTCCGGTTAGCGTCGAGTCTCAGTCCTCCGCT GATCCCACAGTGGCCTCGTCGTCTACTGCCGTTGCCGTGGTGTCTTCGACCCCCGTCGCAGTTGTCTCAGTCGAG ACTACGACTTCTTCGGCCTCTGCTACCCCGGTTGTCCCAGTCGAGACTACATCCTCGTCAGCCTCTGCTGCCGAG ACCGCATTTATCCAGAAGGCAGCTTCCAAGACCGACTCAGTTGTGGCCACTGCATCAACTGAGACTGCCGCTGTC GTCCAGACCATTGCTGCTCCAGTCGTGAAGAGCATCGCCGCGCAGACCTCCACCACTCAAGCTGCCGTCGAAGCT ACCAGCACTTCTACCTCTTCCATTATTTCCTCTTCCACTACCACTTCTTCCGCTACCACCTCTTCCACTACATCC TCCTCCACTACCTCCTCCGCTGCCTCCTCTTCCACCACCTCCTCTTCCGCCATCTCTGTATCTCTCGGTGCCTCC ATTGCCGGCGAAGCTACCTTCTACGGCGGCAATGTCGGCGGCGGAACATGCTCGTTCTCCGGCTACACCCTCCCG AGCAACCTCTTCGGCACAGCCCTCTCCCTCCAGCGCTGGGATGACGCAGCCAACTGCGGCACCTGTGTATCCGTC ACCGGCCCGAGTGGTAACTCCATCACCGCAATGGTAAGCCAAGCTCCCTCCCTTTCCATCCTAACCAACTAAATC TAACCCAAACCAGATCGTCGACCAATGCCCCGAATGCGAAAGCGACCACCTCGACCTCTTCCACGAAGCCTTCGC CGAGCTCGCAGATACATCCCTCGGCGTCATCGAGACGACCTGGTCATACGTGTCCTGCGACCTGGACGGACCTCT CCAGCTCAAGAACAAGGACGGCACCGGCCCGTACTGGTTCTCGATGCAGGTTGTTAATGCCAACGAGGCTGTGAC TGCATTGGATGTTAGCACCGATGGCGGTAGTACGTGGCAGGGCACGACCCGCACGTACTACAACTTCTTCGAGTA CGATGCTGGGTTCAGGACTAGCACTGTTGATGTGCGGGTTACTGGTGCTAGTGGCAACACTGTTATTGTTCAGGA TGTCGCGGTTGTGTCTGGCACTTCGGTTACTGCTGCGTCGAACTTGTAG |